UBQLN1 (ubiquilin 1) - Rat Genome Database

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Gene: UBQLN1 (ubiquilin 1) Sus scrofa
Analyze
Symbol: UBQLN1
Name: ubiquilin 1
RGD ID: 14056985
Description: ENCODES a protein that exhibits protein domain specific binding (ortholog); INVOLVED IN aggrephagy (inferred); autophagosome assembly (inferred); autophagosome maturation (inferred); ASSOCIATED WITH Neoplasm Invasiveness (ortholog); FOUND IN aggresome (inferred); autophagosome (inferred); cytoplasm (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ubiquilin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1031,275,868 - 31,317,516 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11031,275,916 - 31,317,521 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21035,363,230 - 35,404,196 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:30032202  


Genomics

Comparative Map Data
UBQLN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1031,275,868 - 31,317,516 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11031,275,916 - 31,317,521 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21035,363,230 - 35,404,196 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UBQLN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38983,659,968 - 83,707,958 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl983,659,968 - 83,707,958 (-)EnsemblGRCh38hg38GRCh38
GRCh37986,274,883 - 86,322,873 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36985,464,699 - 85,512,773 (-)NCBINCBI36Build 36hg18NCBI36
Build 34983,505,905 - 83,552,422NCBI
Celera956,844,906 - 56,893,172 (-)NCBICelera
Cytogenetic Map9q21.32NCBI
HuRef956,100,224 - 56,148,493 (-)NCBIHuRef
CHM1_1986,421,618 - 86,469,907 (-)NCBICHM1_1
T2T-CHM13v2.0995,809,692 - 95,857,669 (-)NCBIT2T-CHM13v2.0
Ubqln1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391358,323,970 - 58,363,467 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1358,323,970 - 58,363,467 (-)EnsemblGRCm39 Ensembl
GRCm381358,176,156 - 58,215,653 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1358,176,156 - 58,215,653 (-)EnsemblGRCm38mm10GRCm38
MGSCv371358,277,517 - 58,317,014 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361358,185,785 - 58,225,215 (-)NCBIMGSCv36mm8
Celera1359,238,584 - 59,277,865 (-)NCBICelera
Cytogenetic Map13B1NCBI
cM Map1330.95NCBI
Ubqln1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8176,438,456 - 6,482,498 (+)NCBIGRCr8
mRatBN7.2176,439,002 - 6,477,096 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl176,439,002 - 6,477,090 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx176,462,325 - 6,499,084 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0177,994,298 - 8,031,031 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0176,458,709 - 6,495,468 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0176,840,441 - 6,878,842 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl176,840,463 - 6,878,844 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0179,044,221 - 9,081,483 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41712,370,389 - 12,418,868 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11712,370,388 - 12,418,868 (+)NCBI
Celera176,548,513 - 6,585,082 (+)NCBICelera
Cytogenetic Map17p14NCBI
Ubqln1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554323,575,272 - 3,616,691 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554323,575,034 - 3,617,029 (+)NCBIChiLan1.0ChiLan1.0
UBQLN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21182,819,039 - 82,867,380 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1982,824,982 - 82,873,323 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0941,170,416 - 41,218,656 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1982,597,507 - 82,645,587 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl982,597,507 - 82,645,587 (-)Ensemblpanpan1.1panPan2
UBQLN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1175,767,345 - 75,812,278 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl175,767,188 - 75,838,051 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha176,417,095 - 76,461,954 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0176,068,847 - 76,113,777 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl176,068,563 - 76,139,333 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1175,882,246 - 75,927,063 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0175,647,432 - 75,692,286 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0176,348,320 - 76,393,178 (+)NCBIUU_Cfam_GSD_1.0
Ubqln1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947122,436,790 - 122,481,818 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936828542,407 - 588,679 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936828543,651 - 588,673 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBQLN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11294,462,867 - 94,512,313 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1294,461,972 - 94,511,747 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603882,876,902 - 82,926,074 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ubqln1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248096,436,658 - 6,487,251 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248096,434,842 - 6,487,442 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in UBQLN1
910 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 4 3 5 2 23 2 3 3
Low
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000047748   ⟹   ENSSSCP00000039024
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1031,276,593 - 31,317,515 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000054938   ⟹   ENSSSCP00000049204
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1031,275,868 - 31,412,935 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000054940   ⟹   ENSSSCP00000050492
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1031,275,868 - 31,317,516 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000061594   ⟹   ENSSSCP00000040086
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1031,275,868 - 31,316,883 (+)Ensembl
RefSeq Acc Id: XM_021064658   ⟹   XP_020920317
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11031,275,916 - 31,317,521 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021064659   ⟹   XP_020920318
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11031,276,486 - 31,317,519 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020920317   ⟸   XM_021064658
- Peptide Label: isoform X1
- UniProtKB: A0A4X1URW5 (UniProtKB/TrEMBL),   A0A480ECK7 (UniProtKB/TrEMBL),   A0A8D0YBX4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020920318   ⟸   XM_021064659
- Peptide Label: isoform X2
- UniProtKB: A0A4X1UTM5 (UniProtKB/TrEMBL),   I3LSM3 (UniProtKB/TrEMBL),   A0A287B231 (UniProtKB/TrEMBL),   A0A8D0SAZ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000049204   ⟸   ENSSSCT00000054938
RefSeq Acc Id: ENSSSCP00000050492   ⟸   ENSSSCT00000054940
RefSeq Acc Id: ENSSSCP00000040086   ⟸   ENSSSCT00000061594
RefSeq Acc Id: ENSSSCP00000039024   ⟸   ENSSSCT00000047748
Protein Domains
UBA   Ubiquitin-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000021005 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015059194 UniProtKB/TrEMBL
  ENSSSCG00025049765 UniProtKB/TrEMBL
  ENSSSCG00030073953 UniProtKB/TrEMBL
  ENSSSCG00035061720 UniProtKB/TrEMBL
  ENSSSCG00040014969 UniProtKB/TrEMBL
  ENSSSCG00045032554 UniProtKB/TrEMBL
  ENSSSCG00050035861 UniProtKB/TrEMBL
  ENSSSCG00055028568 UniProtKB/TrEMBL
  ENSSSCG00060029797 UniProtKB/TrEMBL
  ENSSSCG00065044644 UniProtKB/TrEMBL
  ENSSSCG00070019756 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000047748 ENTREZGENE
  ENSSSCT00000047748.2 UniProtKB/TrEMBL
  ENSSSCT00000054940 ENTREZGENE
  ENSSSCT00000054940.3 UniProtKB/TrEMBL
  ENSSSCT00015079480.1 UniProtKB/TrEMBL
  ENSSSCT00015079528.1 UniProtKB/TrEMBL
  ENSSSCT00015079966.1 UniProtKB/TrEMBL
  ENSSSCT00025067885.1 UniProtKB/TrEMBL
  ENSSSCT00025068035.1 UniProtKB/TrEMBL
  ENSSSCT00025068409.1 UniProtKB/TrEMBL
  ENSSSCT00030103650.1 UniProtKB/TrEMBL
  ENSSSCT00030103687.1 UniProtKB/TrEMBL
  ENSSSCT00030103696.1 UniProtKB/TrEMBL
  ENSSSCT00030103718.1 UniProtKB/TrEMBL
  ENSSSCT00035082951.1 UniProtKB/TrEMBL
  ENSSSCT00035082959.1 UniProtKB/TrEMBL
  ENSSSCT00035082978.1 UniProtKB/TrEMBL
  ENSSSCT00040020153.1 UniProtKB/TrEMBL
  ENSSSCT00040020166.1 UniProtKB/TrEMBL
  ENSSSCT00040020239.1 UniProtKB/TrEMBL
  ENSSSCT00045055693.1 UniProtKB/TrEMBL
  ENSSSCT00045055776.1 UniProtKB/TrEMBL
  ENSSSCT00045056048.1 UniProtKB/TrEMBL
  ENSSSCT00050048226.1 UniProtKB/TrEMBL
  ENSSSCT00050048231.1 UniProtKB/TrEMBL
  ENSSSCT00050048265.1 UniProtKB/TrEMBL
  ENSSSCT00055056741.1 UniProtKB/TrEMBL
  ENSSSCT00055056790.1 UniProtKB/TrEMBL
  ENSSSCT00055056903.1 UniProtKB/TrEMBL
  ENSSSCT00060040249.1 UniProtKB/TrEMBL
  ENSSSCT00060040267.1 UniProtKB/TrEMBL
  ENSSSCT00060040270.1 UniProtKB/TrEMBL
  ENSSSCT00065061091.1 UniProtKB/TrEMBL
  ENSSSCT00065061096.1 UniProtKB/TrEMBL
  ENSSSCT00065061116.1 UniProtKB/TrEMBL
  ENSSSCT00070039166.1 UniProtKB/TrEMBL
  ENSSSCT00070039172.1 UniProtKB/TrEMBL
  ENSSSCT00070039186.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.260.100 UniProtKB/TrEMBL
  DNA helicase RuvA subunit, C-terminal domain UniProtKB/TrEMBL
InterPro STI1_HS-bd UniProtKB/TrEMBL
  UBA UniProtKB/TrEMBL
  UBA-like_sf UniProtKB/TrEMBL
  Ubiquilin UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
  Ubiquitin_dom UniProtKB/TrEMBL
NCBI Gene UBQLN1 ENTREZGENE
PANTHER UBIQUILIN UniProtKB/TrEMBL
  UBIQUILIN-1 UniProtKB/TrEMBL
Pfam UBA UniProtKB/TrEMBL
  ubiquitin UniProtKB/TrEMBL
PROSITE UBA UniProtKB/TrEMBL
  UBIQUITIN_2 UniProtKB/TrEMBL
SMART STI1 UniProtKB/TrEMBL
  UBA UniProtKB/TrEMBL
  UBQ UniProtKB/TrEMBL
Superfamily-SCOP SSF46934 UniProtKB/TrEMBL
  SSF54236 UniProtKB/TrEMBL
UniProt A0A287A4Y0_PIG UniProtKB/TrEMBL
  A0A287B231 ENTREZGENE, UniProtKB/TrEMBL
  A0A480ECK7 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1URW5 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1URY2_PIG UniProtKB/TrEMBL
  A0A4X1UTM5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0SAZ7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0YBX4 ENTREZGENE, UniProtKB/TrEMBL
  I3LSM3 ENTREZGENE
UniProt Secondary I3LSM3 UniProtKB/TrEMBL
VGNC ID VGNC:95560 ENTREZGENE