CXCL2 (chemokine (C-X-C motif) ligand 2) - Rat Genome Database

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Gene: CXCL2 (chemokine (C-X-C motif) ligand 2) Sus scrofa
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Symbol: CXCL2
Name: chemokine (C-X-C motif) ligand 2
RGD ID: 14051810
Description: ENCODES a protein that exhibits chemokine activity (ortholog); INVOLVED IN antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); cellular response to interleukin-1 (ortholog); cellular response to lipopolysaccharide (ortholog); ASSOCIATED WITH Acute Lung Injury (ortholog); acute necrotizing pancreatitis (ortholog); Alcoholic Liver Diseases (ortholog); FOUND IN extracellular space (ortholog); INTERACTS WITH bis(2-chloroethyl) sulfide; deoxynivalenol; prostaglandin F2alpha
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: C-X-C motif chemokine 2; chemokine ligand 2; GRO2; GROB; MIP2; MIP2A; SCYB2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl870,157,214 - 70,159,138 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1870,157,253 - 70,159,145 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2874,310,094 - 74,311,988 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:16926016   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CXCL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl870,157,214 - 70,159,138 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1870,157,253 - 70,159,145 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2874,310,094 - 74,311,988 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CXCL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38474,097,040 - 74,099,195 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl474,097,040 - 74,099,196 (-)EnsemblGRCh38hg38GRCh38
GRCh37474,962,757 - 74,964,912 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36475,181,616 - 75,183,861 (-)NCBINCBI36Build 36hg18NCBI36
Build 34475,327,790 - 75,329,927NCBI
Celera472,322,837 - 72,325,084 (-)NCBICelera
Cytogenetic Map4q13.3NCBI
HuRef470,773,657 - 70,775,906 (-)NCBIHuRef
CHM1_1474,998,593 - 75,000,838 (-)NCBICHM1_1
T2T-CHM13v2.0477,440,641 - 77,442,796 (-)NCBIT2T-CHM13v2.0
Cxcl2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39591,051,758 - 91,053,797 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl591,051,730 - 91,053,797 (+)EnsemblGRCm39 Ensembl
GRCm38590,903,899 - 90,905,938 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl590,903,871 - 90,905,938 (+)EnsemblGRCm38mm10GRCm38
MGSCv37591,332,925 - 91,334,964 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36591,979,099 - 91,981,138 (+)NCBIMGSCv36mm8
Celera589,048,217 - 89,050,256 (+)NCBICelera
Cytogenetic Map5E1NCBI
cM Map544.78NCBI
Cxcl2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81417,465,210 - 17,467,255 (-)NCBIGRCr8
mRatBN7.21417,181,030 - 17,183,075 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1417,181,062 - 17,183,075 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1417,181,873 - 17,183,917 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01418,500,809 - 18,502,853 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01417,192,924 - 17,194,968 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01418,731,346 - 18,733,391 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1418,731,378 - 18,733,391 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01418,640,312 - 18,642,357 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41418,677,129 - 18,679,175 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11418,677,128 - 18,679,175 (-)NCBI
Celera1416,558,112 - 16,560,157 (-)NCBICelera
Cytogenetic Map14p22NCBI
LOC100974886
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2355,960,804 - 55,963,432 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1456,150,028 - 56,152,424 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0450,092,989 - 50,095,541 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1455,925,562 - 55,927,809 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl455,925,562 - 55,986,555 (+)Ensemblpanpan1.1panPan2

Variants

.
Variants in CXCL2
48 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1
Low 6 3 4 2 3 2
Below cutoff 4 1 3 1 17 2

Sequence


RefSeq Acc Id: NM_001001861   ⟹   NP_001001861
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1870,157,253 - 70,159,145 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001001861   ⟸   NM_001001861
- Peptide Label: precursor
- UniProtKB: Q6PUJ1 (UniProtKB/TrEMBL),   A0A4X1T3L2 (UniProtKB/TrEMBL),   F1RUK7 (UniProtKB/TrEMBL),   A0A4X1T4W1 (UniProtKB/TrEMBL),   A0A8D0WNB6 (UniProtKB/TrEMBL),   Q6PUD4 (UniProtKB/TrEMBL)
- Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000008959 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015029040 UniProtKB/TrEMBL
  ENSSSCG00025017022 UniProtKB/TrEMBL
  ENSSSCG00030036889 UniProtKB/TrEMBL
  ENSSSCG00035068885 UniProtKB/TrEMBL
  ENSSSCG00040074774 UniProtKB/TrEMBL
  ENSSSCG00045010203 UniProtKB/TrEMBL
  ENSSSCG00050007760 UniProtKB/TrEMBL
  ENSSSCG00055030658 UniProtKB/TrEMBL
  ENSSSCG00060041299 UniProtKB/TrEMBL
  ENSSSCG00065015894 UniProtKB/TrEMBL
  ENSSSCG00070006301 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000040395 ENTREZGENE
  ENSSSCT00000040395.3 UniProtKB/TrEMBL
  ENSSSCT00015038485.1 UniProtKB/TrEMBL
  ENSSSCT00015038508.1 UniProtKB/TrEMBL
  ENSSSCT00015038531.1 UniProtKB/TrEMBL
  ENSSSCT00025022943.1 UniProtKB/TrEMBL
  ENSSSCT00025022957.1 UniProtKB/TrEMBL
  ENSSSCT00025022975.1 UniProtKB/TrEMBL
  ENSSSCT00025022997.1 UniProtKB/TrEMBL
  ENSSSCT00025023022.1 UniProtKB/TrEMBL
  ENSSSCT00030051311.1 UniProtKB/TrEMBL
  ENSSSCT00030051350.1 UniProtKB/TrEMBL
  ENSSSCT00030051375.1 UniProtKB/TrEMBL
  ENSSSCT00030051386.1 UniProtKB/TrEMBL
  ENSSSCT00030051405.1 UniProtKB/TrEMBL
  ENSSSCT00030051430.1 UniProtKB/TrEMBL
  ENSSSCT00030051454.1 UniProtKB/TrEMBL
  ENSSSCT00035093025.1 UniProtKB/TrEMBL
  ENSSSCT00035093065.1 UniProtKB/TrEMBL
  ENSSSCT00040103458.1 UniProtKB/TrEMBL
  ENSSSCT00045017261.1 UniProtKB/TrEMBL
  ENSSSCT00045017279.1 UniProtKB/TrEMBL
  ENSSSCT00045017310.1 UniProtKB/TrEMBL
  ENSSSCT00045017362.1 UniProtKB/TrEMBL
  ENSSSCT00045017389.1 UniProtKB/TrEMBL
  ENSSSCT00050010593.1 UniProtKB/TrEMBL
  ENSSSCT00050010604.1 UniProtKB/TrEMBL
  ENSSSCT00055061109.1 UniProtKB/TrEMBL
  ENSSSCT00055061111.1 UniProtKB/TrEMBL
  ENSSSCT00055061121.1 UniProtKB/TrEMBL
  ENSSSCT00055061123.1 UniProtKB/TrEMBL
  ENSSSCT00060055977.1 UniProtKB/TrEMBL
  ENSSSCT00060055987.1 UniProtKB/TrEMBL
  ENSSSCT00060055992.1 UniProtKB/TrEMBL
  ENSSSCT00060056010.1 UniProtKB/TrEMBL
  ENSSSCT00060056020.1 UniProtKB/TrEMBL
  ENSSSCT00060056027.1 UniProtKB/TrEMBL
  ENSSSCT00060056030.1 UniProtKB/TrEMBL
  ENSSSCT00065021067.1 UniProtKB/TrEMBL
  ENSSSCT00065021084.1 UniProtKB/TrEMBL
  ENSSSCT00065021106.1 UniProtKB/TrEMBL
  ENSSSCT00065021114.1 UniProtKB/TrEMBL
  ENSSSCT00065021117.1 UniProtKB/TrEMBL
  ENSSSCT00070012023.1 UniProtKB/TrEMBL
  ENSSSCT00070012029.1 UniProtKB/TrEMBL
  ENSSSCT00070012067.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.40 UniProtKB/TrEMBL
InterPro Chemokine_b/g/d UniProtKB/TrEMBL
  Chemokine_CXC UniProtKB/TrEMBL
  Chemokine_CXC_CS UniProtKB/TrEMBL
  Chemokine_IL8-like_dom UniProtKB/TrEMBL
  CXC_Chemokine_domain UniProtKB/TrEMBL
  Interleukin_8-like_sf UniProtKB/TrEMBL
KEGG Report ssc:414904 UniProtKB/TrEMBL
NCBI Gene CXCL2 ENTREZGENE
PANTHER GROWTH-REGULATED ALPHA PROTEIN UniProtKB/TrEMBL
  SMALL INDUCIBLE CYTOKINE A UniProtKB/TrEMBL
Pfam IL8 UniProtKB/TrEMBL
PRINTS INTERLEUKIN8 UniProtKB/TrEMBL
  SMALLCYTKCXC UniProtKB/TrEMBL
PROSITE SMALL_CYTOKINES_CXC UniProtKB/TrEMBL
SMART SCY UniProtKB/TrEMBL
Superfamily-SCOP SSF54117 UniProtKB/TrEMBL
UniProt A0A4X1T3L2 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1T4W1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0N921_PIG UniProtKB/TrEMBL
  A0A8D0NDQ4_PIG UniProtKB/TrEMBL
  A0A8D0R068_PIG UniProtKB/TrEMBL
  A0A8D0WL62_PIG UniProtKB/TrEMBL
  A0A8D0WMC5_PIG UniProtKB/TrEMBL
  A0A8D0WMD5_PIG UniProtKB/TrEMBL
  A0A8D0WNB6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0WNJ9_PIG UniProtKB/TrEMBL
  A0A8D0WNK1_PIG UniProtKB/TrEMBL
  A0A8D0WRA0_PIG UniProtKB/TrEMBL
  A0A8D1H0L6_PIG UniProtKB/TrEMBL
  A0A8D1H1D3_PIG UniProtKB/TrEMBL
  A0A8D1H9L7_PIG UniProtKB/TrEMBL
  A0A8D1KTJ7_PIG UniProtKB/TrEMBL
  A0A8D1VI37_PIG UniProtKB/TrEMBL
  A0A8D1XU07_PIG UniProtKB/TrEMBL
  A0A8D2BJI3_PIG UniProtKB/TrEMBL
  A0A8D2BJI5_PIG UniProtKB/TrEMBL
  A0A8D2BJU4_PIG UniProtKB/TrEMBL
  A0A8D2C048_PIG UniProtKB/TrEMBL
  F1RUK7 ENTREZGENE
  K7GPC7_PIG UniProtKB/TrEMBL
  Q6PUD4 ENTREZGENE, UniProtKB/TrEMBL
  Q6PUJ1 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A287AFQ1 UniProtKB/TrEMBL
  F1RUK7 UniProtKB/TrEMBL