MPEG1 (macrophage expressed 1) - Rat Genome Database

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Gene: MPEG1 (macrophage expressed 1) Sus scrofa
Analyze
Symbol: MPEG1
Name: macrophage expressed 1
RGD ID: 14040769
Description: ENCODES a protein that exhibits wide pore channel activity (inferred); INVOLVED IN adaptive immune response (inferred); defense response to bacterium (inferred); defense response to Gram-negative bacterium (inferred); ASSOCIATED WITH Experimental Liver Neoplasms (ortholog); Immunodeficiency 77 (ortholog); intellectual disability (ortholog); FOUND IN phagolysosome membrane (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: macrophage-expressed gene 1 protein
RGD Orthologs
Human
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl212,194,327 - 12,198,351 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1212,194,303 - 12,196,594 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2211,807,301 - 11,809,592 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
MPEG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl212,194,327 - 12,198,351 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1212,194,303 - 12,196,594 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2211,807,301 - 11,809,592 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MPEG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381159,208,510 - 59,212,927 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1159,208,510 - 59,212,927 (-)EnsemblGRCh38hg38GRCh38
GRCh371158,975,983 - 58,980,400 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361158,732,559 - 58,737,070 (-)NCBINCBI36Build 36hg18NCBI36
Celera1156,335,080 - 56,339,591 (-)NCBICelera
Cytogenetic Map11q12.1NCBI
HuRef1155,321,954 - 55,326,538 (-)NCBIHuRef
CHM1_11158,841,473 - 58,846,067 (-)NCBICHM1_1
T2T-CHM13v2.01159,157,683 - 59,162,100 (-)NCBIT2T-CHM13v2.0

Variants

.
Variants in MPEG1
46 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 9 2 5 15 2 3
Low 1 2 3 2 8 2 1
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000014364
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl212,194,341 - 12,198,352 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000088265   ⟹   ENSSSCP00000075798
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl212,194,327 - 12,198,351 (+)Ensembl
RefSeq Acc Id: NM_001267892   ⟹   NP_001254821
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1212,194,303 - 12,196,594 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001254821 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AFL71231 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000075798
  ENSSSCP00000075798.1
  ENSSSCP00055028942.1
Reference Protein Sequences
RefSeq Acc Id: NP_001254821   ⟸   NM_001267892
- Peptide Label: precursor
- UniProtKB: I3Y4E7 (UniProtKB/TrEMBL),   A0A8D1QYH6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000075798   ⟸   ENSSSCT00000088265
Protein Domains
MACPF


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000013144 Ensembl
  ENSSSCG00000050458 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00055018634 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000088265 ENTREZGENE
  ENSSSCT00000088265.2 UniProtKB/TrEMBL
  ENSSSCT00055036440.1 UniProtKB/TrEMBL
InterPro MACPF UniProtKB/TrEMBL
  MPEG1 UniProtKB/TrEMBL
KEGG Report ssc:100516953 UniProtKB/TrEMBL
NCBI Gene MPEG1 ENTREZGENE
PANTHER MACROPHAGE-EXPRESSED GENE 1 PROTEIN UniProtKB/TrEMBL
  PTHR31463 UniProtKB/TrEMBL
Pfam MACPF UniProtKB/TrEMBL
PROSITE MACPF_2 UniProtKB/TrEMBL
SMART MACPF UniProtKB/TrEMBL
UniProt A0A8D1QYH6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4F8T8_PIG UniProtKB/TrEMBL
  I3Y4E7 ENTREZGENE, UniProtKB/TrEMBL