TRIM25 (tripartite motif containing 25) - Rat Genome Database

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Gene: TRIM25 (tripartite motif containing 25) Sus scrofa
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Symbol: TRIM25
Name: tripartite motif containing 25
RGD ID: 14038489
Description: ENCODES a protein that exhibits ubiquitin-protein transferase activity (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); response to estrogen (ortholog); response to vitamin D (ortholog); ASSOCIATED WITH Joubert syndrome 1 (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: E3 ubiquitin/ISG15 ligase TRIM25
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1233,184,049 - 33,212,398 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11233,184,039 - 33,212,440 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21234,134,354 - 34,153,408 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074   PMID:31176400  


Genomics

Comparative Map Data
TRIM25
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1233,184,049 - 33,212,398 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11233,184,039 - 33,212,440 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21234,134,354 - 34,153,408 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TRIM25
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381756,887,909 - 56,914,049 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1756,836,387 - 56,914,080 (-)EnsemblGRCh38hg38GRCh38
GRCh371754,965,270 - 54,991,410 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361752,320,269 - 52,346,408 (-)NCBINCBI36Build 36hg18NCBI36
Build 341752,323,634 - 52,346,408NCBI
Celera1751,426,842 - 51,452,985 (-)NCBICelera
Cytogenetic Map17q22NCBI
HuRef1750,325,845 - 50,351,990 (-)NCBIHuRef
CHM1_11755,030,515 - 55,056,657 (-)NCBICHM1_1
T2T-CHM13v2.01757,765,556 - 57,791,697 (-)NCBIT2T-CHM13v2.0
Trim25
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391188,890,194 - 88,911,119 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1188,890,202 - 88,911,119 (+)EnsemblGRCm39 Ensembl
GRCm381188,999,403 - 89,020,294 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1188,999,376 - 89,020,293 (+)EnsemblGRCm38mm10GRCm38
MGSCv371188,860,717 - 88,881,607 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361188,815,570 - 88,836,383 (+)NCBIMGSCv36mm8
Celera1198,615,674 - 98,636,481 (+)NCBICelera
Cytogenetic Map11CNCBI
cM Map1154.34NCBI
Trim25
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81074,310,024 - 74,328,473 (+)NCBIGRCr8
mRatBN7.21073,812,818 - 73,831,271 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1073,812,818 - 73,831,257 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1078,435,527 - 78,455,017 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01077,940,454 - 77,959,941 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01073,403,619 - 73,423,106 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01076,343,847 - 76,362,159 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1076,343,847 - 76,362,145 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01073,750,003 - 73,769,423 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41077,459,844 - 77,488,383 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1072,717,934 - 72,735,695 (+)NCBICelera
Cytogenetic Map10q26NCBI
Trim25
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554515,918,287 - 5,934,258 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554515,918,287 - 5,934,252 (+)NCBIChiLan1.0ChiLan1.0
TRIM25
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21973,061,300 - 73,097,537 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11777,872,236 - 77,900,713 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01750,965,592 - 50,991,630 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11755,826,458 - 55,852,422 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1755,826,458 - 55,852,422 (-)Ensemblpanpan1.1panPan2
TRIM25
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1931,703,628 - 31,725,674 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl931,707,034 - 31,725,762 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha930,943,465 - 30,965,495 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0932,511,355 - 32,533,408 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl932,511,360 - 32,533,388 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1931,296,490 - 31,318,526 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0931,580,728 - 31,602,758 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0931,664,093 - 31,686,131 (-)NCBIUU_Cfam_GSD_1.0
Trim25
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560231,081,655 - 31,095,879 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364905,979,425 - 5,997,639 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364905,979,320 - 5,997,632 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIM25
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11636,496,829 - 36,522,427 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1636,496,772 - 36,524,148 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660777,316,204 - 7,343,303 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trim25
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479511,971,610 - 11,986,608 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479511,967,908 - 11,986,707 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TRIM25
1275 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 8 2 5 2 3
Low 2 2 3 2 23 2 1
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000035478   ⟹   ENSSSCP00000030396
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1233,184,044 - 33,212,398 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000091345   ⟹   ENSSSCP00000067922
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1233,184,049 - 33,212,398 (-)Ensembl
RefSeq Acc Id: XM_005656971   ⟹   XP_005657028
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11233,184,039 - 33,212,440 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005657028   ⟸   XM_005656971
- UniProtKB: A0A5G2QSW4 (UniProtKB/TrEMBL),   A0A8D1B3R2 (UniProtKB/TrEMBL),   K9IWC7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000030396   ⟸   ENSSSCT00000035478
RefSeq Acc Id: ENSSSCP00000067922   ⟸   ENSSSCT00000091345
Protein Domains
B30.2/SPRY   RING-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000017614 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015036867 UniProtKB/TrEMBL
  ENSSSCG00025017511 UniProtKB/TrEMBL
  ENSSSCG00030020047 UniProtKB/TrEMBL
  ENSSSCG00035071207 UniProtKB/TrEMBL
  ENSSSCG00040014404 UniProtKB/TrEMBL
  ENSSSCG00045022955 UniProtKB/TrEMBL
  ENSSSCG00055016648 UniProtKB/TrEMBL
  ENSSSCG00065018302 UniProtKB/TrEMBL
  ENSSSCG00070000814 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000091345 ENTREZGENE
  ENSSSCT00000091345.2 UniProtKB/TrEMBL
  ENSSSCT00015049093.1 UniProtKB/TrEMBL
  ENSSSCT00025023690.1 UniProtKB/TrEMBL
  ENSSSCT00025023723.1 UniProtKB/TrEMBL
  ENSSSCT00030027685.1 UniProtKB/TrEMBL
  ENSSSCT00030027713.1 UniProtKB/TrEMBL
  ENSSSCT00030027721.1 UniProtKB/TrEMBL
  ENSSSCT00035096212.1 UniProtKB/TrEMBL
  ENSSSCT00040019265.1 UniProtKB/TrEMBL
  ENSSSCT00040019308.1 UniProtKB/TrEMBL
  ENSSSCT00040019325.1 UniProtKB/TrEMBL
  ENSSSCT00045039192.1 UniProtKB/TrEMBL
  ENSSSCT00055032841.1 UniProtKB/TrEMBL
  ENSSSCT00065024340.1 UniProtKB/TrEMBL
  ENSSSCT00070001577.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.920 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
  4.10.830.40 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro B30.2/SPRY UniProtKB/TrEMBL
  B30.2/SPRY_sf UniProtKB/TrEMBL
  Butyrophylin_SPRY UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/TrEMBL
  PRY UniProtKB/TrEMBL
  SPRY_dom UniProtKB/TrEMBL
  TRIM25_SPRY_PRY UniProtKB/TrEMBL
  Znf-RING_euk UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
NCBI Gene TRIM25 ENTREZGENE
PANTHER B-BOX DOMAIN CONTAINING UniProtKB/TrEMBL
  E3 UBIQUITIN_ISG15 LIGASE TRIM25 UniProtKB/TrEMBL
Pfam PRY UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
  zf-RING_UBOX UniProtKB/TrEMBL
PRINTS BUTYPHLNCDUF UniProtKB/TrEMBL
PROSITE B302_SPRY UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
SMART PRY UniProtKB/TrEMBL
  RING UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
Superfamily-SCOP B-box zinc-binding domain UniProtKB/TrEMBL
  RING/U-box UniProtKB/TrEMBL
  SSF49899 UniProtKB/TrEMBL
UniProt A0A4X1SHM4_PIG UniProtKB/TrEMBL
  A0A5G2QSW4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0R2Q9_PIG UniProtKB/TrEMBL
  A0A8D0RB89_PIG UniProtKB/TrEMBL
  A0A8D1B3R2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1DK19_PIG UniProtKB/TrEMBL
  A0A8D1K3C0_PIG UniProtKB/TrEMBL
  A0A8D1K3J1_PIG UniProtKB/TrEMBL
  K9IWC7 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:94401 ENTREZGENE