RGS20 (regulator of G protein signaling 20) - Rat Genome Database

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Gene: RGS20 (regulator of G protein signaling 20) Sus scrofa
Analyze
Symbol: RGS20
Name: regulator of G protein signaling 20
RGD ID: 14038221
Description: INVOLVED IN response to amphetamine (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasm (ortholog); trans-Golgi network (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: regulator of G-protein signaling 20
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl477,141,945 - 77,209,533 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1477,141,935 - 77,185,209 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2484,213,610 - 84,280,766 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
RGS20
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl477,141,945 - 77,209,533 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1477,141,935 - 77,185,209 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2484,213,610 - 84,280,766 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RGS20
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38853,851,795 - 53,959,303 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl853,851,795 - 53,959,303 (+)EnsemblGRCh38hg38GRCh38
GRCh37854,764,355 - 54,871,864 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36854,926,921 - 55,034,416 (+)NCBINCBI36Build 36hg18NCBI36
Build 34854,926,920 - 55,034,416NCBI
Celera850,754,534 - 50,862,294 (+)NCBICelera
Cytogenetic Map8q11.23NCBI
HuRef850,231,893 - 50,339,515 (+)NCBIHuRef
CHM1_1854,816,161 - 54,923,378 (+)NCBICHM1_1
T2T-CHM13v2.0854,229,188 - 54,336,699 (+)NCBIT2T-CHM13v2.0
Rgs20
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914,976,342 - 5,140,528 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl14,979,799 - 5,140,508 (-)EnsemblGRCm39 Ensembl
GRCm3814,909,573 - 5,070,299 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14,909,576 - 5,070,285 (-)EnsemblGRCm38mm10GRCm38
MGSCv3714,899,657 - 5,060,366 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3614,900,326 - 5,009,967 (-)NCBIMGSCv36mm8
Celera14,920,984 - 5,081,194 (-)NCBICelera
Cytogenetic Map1A1NCBI
cM Map11.8NCBI
Rgs20
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8519,282,249 - 19,412,122 (+)NCBIGRCr8
mRatBN7.2514,484,436 - 14,614,317 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl514,534,775 - 14,614,084 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx516,676,816 - 17,279,107 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0518,284,572 - 18,882,373 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0518,011,498 - 18,613,725 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0514,367,498 - 14,494,048 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl514,415,606 - 14,494,756 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0519,197,565 - 19,275,548 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4514,737,677 - 14,816,606 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera513,906,964 - 13,985,237 (+)NCBICelera
Cytogenetic Map5q12NCBI
Rgs20
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495545413,271,409 - 13,305,730 (+)NCBIChiLan1.0ChiLan1.0
RGS20
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2769,516,347 - 69,597,914 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1845,241,161 - 45,322,695 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0850,277,765 - 50,386,289 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1847,655,584 - 47,763,411 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl847,655,584 - 47,763,411 (+)Ensemblpanpan1.1panPan2
RGS20
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1295,520,858 - 5,606,028 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl295,521,641 - 5,605,405 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha295,896,985 - 5,981,029 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0295,600,289 - 5,682,211 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl295,600,562 - 5,682,211 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1295,558,943 - 5,618,770 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0295,741,151 - 5,824,526 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0295,823,542 - 5,907,602 (+)NCBIUU_Cfam_GSD_1.0
Rgs20
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530373,919,030 - 73,990,753 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936496794,945 - 864,234 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936496794,968 - 864,714 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RGS20
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1849,934,043 - 50,041,914 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl849,934,940 - 50,041,051 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603991,897,557 - 92,005,525 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rgs20
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247351,710,957 - 1,785,400 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RGS20
1290 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 3 1 23
Below cutoff 9 2 4 2 2 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_001927277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSSCT00000006861   ⟹   ENSSSCP00000006675
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl477,141,945 - 77,209,533 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000069309   ⟹   ENSSSCP00000065278
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl477,141,945 - 77,209,334 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000089478   ⟹   ENSSSCP00000065353
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl477,141,945 - 77,184,502 (-)Ensembl
RefSeq Acc Id: XM_001927277   ⟹   XP_001927312
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1477,141,935 - 77,185,209 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_001927312 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000006675.3
  ENSSSCP00000065278.1
  ENSSSCP00000065353
  ENSSSCP00000065353.1
  ENSSSCP00030026184.1
  ENSSSCP00070010265.1
Reference Protein Sequences
RefSeq Acc Id: XP_001927312   ⟸   XM_001927277
- UniProtKB: A0A5G2QMS8 (UniProtKB/TrEMBL),   A0A4X1T3B4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000006675   ⟸   ENSSSCT00000006861
RefSeq Acc Id: ENSSSCP00000065353   ⟸   ENSSSCT00000089478
RefSeq Acc Id: ENSSSCP00000065278   ⟸   ENSSSCT00000069309
Protein Domains
RGS


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000006262 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00030041458 UniProtKB/TrEMBL
  ENSSSCG00070006503 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000006861.5 UniProtKB/TrEMBL
  ENSSSCT00000069309.1 UniProtKB/TrEMBL
  ENSSSCT00000089478 ENTREZGENE
  ENSSSCT00000089478.2 UniProtKB/TrEMBL
  ENSSSCT00030057618.1 UniProtKB/TrEMBL
  ENSSSCT00070012481.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.167.10 UniProtKB/TrEMBL
  1.10.196.10 UniProtKB/TrEMBL
InterPro RGS UniProtKB/TrEMBL
  RGS_sf UniProtKB/TrEMBL
  RGS_subdom1/3 UniProtKB/TrEMBL
  RGS_subdomain_2 UniProtKB/TrEMBL
KEGG Report ssc:100156509 UniProtKB/TrEMBL
NCBI Gene RGS20 ENTREZGENE
PANTHER REGULATOR OF G PROTEIN SIGNALING UniProtKB/TrEMBL
  REGULATOR OF G-PROTEIN SIGNALING 20 UniProtKB/TrEMBL
Pfam RGS UniProtKB/TrEMBL
PRINTS RGSPROTEIN UniProtKB/TrEMBL
PROSITE RGS UniProtKB/TrEMBL
SMART RGS UniProtKB/TrEMBL
Superfamily-SCOP SSF48097 UniProtKB/TrEMBL
UniProt A0A4X1T3B4 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QML2_PIG UniProtKB/TrEMBL
  A0A5G2QMS8 ENTREZGENE, UniProtKB/TrEMBL
  F1RSG7_PIG UniProtKB/TrEMBL
VGNC ID VGNC:92264 ENTREZGENE