SECISBP2L (SECIS binding protein 2 like) - Rat Genome Database

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Gene: SECISBP2L (SECIS binding protein 2 like) Sus scrofa
Analyze
Symbol: SECISBP2L
Name: SECIS binding protein 2 like
RGD ID: 14036211
Description: ENCODES a protein that exhibits mRNA 3'-UTR binding (inferred); ribonucleoprotein complex binding (inferred); selenocysteine insertion sequence binding (inferred); INVOLVED IN selenocysteine incorporation (inferred); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); Lung Neoplasms (ortholog); FOUND IN ribonucleoprotein complex (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: selenocysteine insertion sequence-binding protein 2-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1122,633,736 - 122,688,603 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11122,633,628 - 122,688,611 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21136,458,261 - 136,513,295 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:30032202  


Genomics

Comparative Map Data
SECISBP2L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1122,633,736 - 122,688,603 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11122,633,628 - 122,688,611 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21136,458,261 - 136,513,295 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SECISBP2L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381548,988,638 - 49,046,446 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1548,988,476 - 49,046,447 (-)EnsemblGRCh38hg38GRCh38
GRCh371549,280,835 - 49,338,643 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361547,068,259 - 47,125,922 (-)NCBINCBI36Build 36hg18NCBI36
Celera1526,174,444 - 26,232,374 (-)NCBICelera
Cytogenetic Map15q21.1NCBI
HuRef1526,112,841 - 26,170,795 (-)NCBIHuRef
CHM1_11549,398,857 - 49,457,153 (-)NCBICHM1_1
T2T-CHM13v2.01546,796,860 - 46,854,692 (-)NCBIT2T-CHM13v2.0
Secisbp2l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392125,578,906 - 125,624,790 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2125,578,906 - 125,624,790 (-)EnsemblGRCm39 Ensembl
GRCm382125,736,986 - 125,782,870 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2125,736,986 - 125,782,870 (-)EnsemblGRCm38mm10GRCm38
MGSCv372125,562,722 - 125,608,606 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362125,428,376 - 125,479,052 (-)NCBIMGSCv36mm8
Celera2126,982,537 - 127,028,871 (-)NCBICelera
Cytogenetic Map2F1NCBI
cM Map261.76NCBI
Secisbp2l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83133,443,023 - 133,489,467 (-)NCBIGRCr8
mRatBN7.23112,989,613 - 113,036,060 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3112,991,908 - 113,035,884 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3116,857,459 - 116,901,645 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03125,452,977 - 125,497,161 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03123,113,348 - 123,157,534 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03118,007,950 - 118,051,403 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3118,006,151 - 118,051,289 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03124,532,094 - 124,575,388 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43113,048,593 - 113,092,428 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3111,846,883 - 111,890,703 (-)NCBICelera
Cytogenetic Map3q36NCBI
Secisbp2l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554094,926,942 - 4,975,099 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554094,926,330 - 4,974,889 (+)NCBIChiLan1.0ChiLan1.0
SECISBP2L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21638,228,902 - 38,325,542 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11542,412,792 - 42,509,404 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01527,937,192 - 28,033,830 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11546,260,387 - 46,318,035 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1546,260,387 - 46,318,036 (-)Ensemblpanpan1.1panPan2
SECISBP2L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13015,214,550 - 15,274,206 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3015,217,722 - 15,273,953 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3015,136,120 - 15,198,024 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03015,348,238 - 15,409,942 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3015,351,254 - 15,409,905 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13015,271,770 - 15,333,466 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03015,393,363 - 15,455,262 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03015,499,289 - 15,561,060 (-)NCBIUU_Cfam_GSD_1.0
Secisbp2l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864093,454,703 - 93,509,138 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647111,302,767 - 11,357,275 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647111,302,767 - 11,357,275 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SECISBP2L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12634,205,361 - 34,303,783 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2634,244,747 - 34,304,382 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048106,824,551 - 106,923,095 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Secisbp2l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473110,713,271 - 10,758,541 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473110,712,465 - 10,758,422 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SECISBP2L
999 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 4 3 5 2 23 2 3 3
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000005138   ⟹   ENSSSCP00000005013
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1122,633,737 - 122,685,954 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000042081   ⟹   ENSSSCP00000056627
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1122,633,795 - 122,685,956 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000046882   ⟹   ENSSSCP00000038073
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1122,633,736 - 122,688,603 (+)Ensembl
RefSeq Acc Id: NM_001206341   ⟹   NP_001193270
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11122,633,628 - 122,688,609 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005659630   ⟹   XP_005659687
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11122,633,633 - 122,688,611 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005659631   ⟹   XP_005659688
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11122,633,633 - 122,688,611 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021099210   ⟹   XP_020954869
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11122,638,577 - 122,688,611 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001193270   ⟸   NM_001206341
- UniProtKB: A0A480VRG5 (UniProtKB/TrEMBL),   A0A4X1SLA2 (UniProtKB/TrEMBL),   A0A8D1N978 (UniProtKB/TrEMBL),   A0A8D1FZC9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005659688   ⟸   XM_005659631
- Peptide Label: isoform X3
- UniProtKB: A0A287A2X8 (UniProtKB/TrEMBL),   A0A4X1SL64 (UniProtKB/TrEMBL),   A0A8D1N978 (UniProtKB/TrEMBL),   A0A8D1PJR1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005659687   ⟸   XM_005659630
- Peptide Label: isoform X2
- UniProtKB: A0A287BJS0 (UniProtKB/TrEMBL),   A0A4X1SLD2 (UniProtKB/TrEMBL),   A0A8D1N978 (UniProtKB/TrEMBL),   A0A8D0M0Q0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020954869   ⟸   XM_021099210
- Peptide Label: isoform X1
- UniProtKB: A0A8D1PH50 (UniProtKB/TrEMBL),   F1SQG4 (UniProtKB/TrEMBL),   A0A8D1N978 (UniProtKB/TrEMBL),   A0A8D1IQQ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000005013   ⟸   ENSSSCT00000005138
RefSeq Acc Id: ENSSSCP00000038073   ⟸   ENSSSCT00000046882
RefSeq Acc Id: ENSSSCP00000056627   ⟸   ENSSSCT00000042081
Protein Domains
Ribosomal protein eL8/eL30/eS12/Gadd45


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000004653 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005043224 UniProtKB/TrEMBL
  ENSSSCG00015069268 UniProtKB/TrEMBL
  ENSSSCG00025062392 UniProtKB/TrEMBL
  ENSSSCG00030019740 UniProtKB/TrEMBL
  ENSSSCG00035022273 UniProtKB/TrEMBL
  ENSSSCG00040072775 UniProtKB/TrEMBL
  ENSSSCG00045031107 UniProtKB/TrEMBL
  ENSSSCG00050056597 UniProtKB/TrEMBL
  ENSSSCG00055002424 UniProtKB/TrEMBL
  ENSSSCG00060007952 UniProtKB/TrEMBL
  ENSSSCG00065017018 UniProtKB/TrEMBL
  ENSSSCG00070002041 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000005138 ENTREZGENE
  ENSSSCT00000005138.4 UniProtKB/TrEMBL
  ENSSSCT00000042081 ENTREZGENE
  ENSSSCT00000042081.3 UniProtKB/TrEMBL
  ENSSSCT00000046882 ENTREZGENE
  ENSSSCT00000046882.3 UniProtKB/TrEMBL
  ENSSSCT00005069359.1 UniProtKB/TrEMBL
  ENSSSCT00005069403.1 UniProtKB/TrEMBL
  ENSSSCT00005069429.1 UniProtKB/TrEMBL
  ENSSSCT00005069456.1 UniProtKB/TrEMBL
  ENSSSCT00015092776.1 UniProtKB/TrEMBL
  ENSSSCT00015092824.1 UniProtKB/TrEMBL
  ENSSSCT00015093022.1 UniProtKB/TrEMBL
  ENSSSCT00025085411.1 UniProtKB/TrEMBL
  ENSSSCT00025085627.1 UniProtKB/TrEMBL
  ENSSSCT00025085904.1 UniProtKB/TrEMBL
  ENSSSCT00030027239.1 UniProtKB/TrEMBL
  ENSSSCT00030027244.1 UniProtKB/TrEMBL
  ENSSSCT00030027271.1 UniProtKB/TrEMBL
  ENSSSCT00035029068.1 UniProtKB/TrEMBL
  ENSSSCT00035029073.1 UniProtKB/TrEMBL
  ENSSSCT00035029089.1 UniProtKB/TrEMBL
  ENSSSCT00040100318.1 UniProtKB/TrEMBL
  ENSSSCT00040100411.1 UniProtKB/TrEMBL
  ENSSSCT00040100478.1 UniProtKB/TrEMBL
  ENSSSCT00040100581.1 UniProtKB/TrEMBL
  ENSSSCT00045053038.1 UniProtKB/TrEMBL
  ENSSSCT00045053223.1 UniProtKB/TrEMBL
  ENSSSCT00045053452.1 UniProtKB/TrEMBL
  ENSSSCT00050077168.1 UniProtKB/TrEMBL
  ENSSSCT00050077169.1 UniProtKB/TrEMBL
  ENSSSCT00050077173.1 UniProtKB/TrEMBL
  ENSSSCT00055004602.1 UniProtKB/TrEMBL
  ENSSSCT00055004611.1 UniProtKB/TrEMBL
  ENSSSCT00055004651.1 UniProtKB/TrEMBL
  ENSSSCT00060010163.1 UniProtKB/TrEMBL
  ENSSSCT00060010165.1 UniProtKB/TrEMBL
  ENSSSCT00060010174.1 UniProtKB/TrEMBL
  ENSSSCT00065022579.1 UniProtKB/TrEMBL
  ENSSSCT00065022595.1 UniProtKB/TrEMBL
  ENSSSCT00070003895.1 UniProtKB/TrEMBL
  ENSSSCT00070003903.1 UniProtKB/TrEMBL
  ENSSSCT00070003909.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1330.30 UniProtKB/TrEMBL
InterPro L30e-like UniProtKB/TrEMBL
  Ribosomal_L7Ae/L30e/S12e/Gad45 UniProtKB/TrEMBL
  SECISBP2 UniProtKB/TrEMBL
KEGG Report ssc:100156761 UniProtKB/TrEMBL
NCBI Gene SECISBP2L ENTREZGENE
PANTHER PTHR13284 UniProtKB/TrEMBL
  SELENOCYSTEINE INSERTION SEQUENCE-BINDING PROTEIN 2-LIKE UniProtKB/TrEMBL
Pfam Ribosomal_L7Ae UniProtKB/TrEMBL
Superfamily-SCOP SSF55315 UniProtKB/TrEMBL
UniProt A0A287A2X8 ENTREZGENE
  A0A287BJS0 ENTREZGENE
  A0A480VRG5 ENTREZGENE
  A0A4X1SL64 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SLA2 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SLD2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0M0Q0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1FZC9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1IQQ3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1N978 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1PH50 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1PJR1 ENTREZGENE, UniProtKB/TrEMBL
  F1SQG4 ENTREZGENE
UniProt Secondary A0A287A2X8 UniProtKB/TrEMBL
  A0A287BJS0 UniProtKB/TrEMBL
  A0A480VRG5 UniProtKB/TrEMBL
  F1SQG4 UniProtKB/TrEMBL
VGNC ID VGNC:92686 ENTREZGENE