DNAJC5G (DnaJ heat shock protein family (Hsp40) member C5 gamma) - Rat Genome Database

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Gene: DNAJC5G (DnaJ heat shock protein family (Hsp40) member C5 gamma) Sus scrofa
Analyze
Symbol: DNAJC5G
Name: DnaJ heat shock protein family (Hsp40) member C5 gamma
RGD ID: 14032728
Description: ASSOCIATED WITH genetic disease (ortholog); Tatton-Brown-Rahman syndrome (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: dnaJ homolog subfamily C member 5G
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3111,853,664 - 111,857,677 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13111,853,579 - 111,863,610 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

References
Additional References at PubMed
PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
DNAJC5G
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3111,853,664 - 111,857,677 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13111,853,579 - 111,863,610 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
DNAJC5G
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38227,275,433 - 27,281,499 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl227,275,433 - 27,281,499 (+)EnsemblGRCh38hg38GRCh38
GRCh37227,498,301 - 27,504,367 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36227,351,793 - 27,357,800 (+)NCBINCBI36Build 36hg18NCBI36
Build 34227,409,939 - 27,415,947NCBI
Celera227,344,613 - 27,350,620 (+)NCBICelera
Cytogenetic Map2p23.3NCBI
HuRef227,239,996 - 27,245,999 (+)NCBIHuRef
CHM1_1227,428,194 - 27,434,214 (+)NCBICHM1_1
T2T-CHM13v2.0227,306,154 - 27,323,119 (+)NCBIT2T-CHM13v2.0
Dnajc5g
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39531,265,637 - 31,269,870 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl531,263,629 - 31,269,870 (+)EnsemblGRCm39 Ensembl
GRCm38531,108,293 - 31,112,526 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl531,106,285 - 31,112,526 (+)EnsemblGRCm38mm10GRCm38
MGSCv37531,410,692 - 31,414,897 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36531,384,900 - 31,389,105 (+)NCBIMGSCv36mm8
Celera528,587,212 - 28,591,417 (+)NCBICelera
Cytogenetic Map5B1NCBI
cM Map517.03NCBI
Dnajc5g
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8630,980,051 - 30,984,218 (-)NCBIGRCr8
mRatBN7.2625,260,087 - 25,264,251 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl625,260,088 - 25,264,152 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx625,560,922 - 25,564,986 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0625,876,780 - 25,880,844 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0625,355,884 - 25,359,956 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0626,625,526 - 26,629,651 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl626,625,525 - 26,629,654 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0636,440,652 - 36,444,786 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4625,239,151 - 25,243,215 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1625,242,104 - 25,246,168 (-)NCBI
Celera624,751,187 - 24,755,251 (-)NCBICelera
Cytogenetic Map6q14NCBI
Dnajc5g
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554699,255,194 - 9,257,215 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554699,254,372 - 9,257,235 (+)NCBIChiLan1.0ChiLan1.0
DNAJC5G
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21299,232,580 - 99,249,064 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A99,236,548 - 99,253,038 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A27,276,795 - 27,282,874 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A27,364,880 - 27,370,848 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A27,364,880 - 27,370,848 (+)Ensemblpanpan1.1panPan2
DNAJC5G
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11721,253,067 - 21,256,754 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1721,254,005 - 21,255,542 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1721,144,869 - 21,148,560 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01721,574,312 - 21,578,001 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1721,575,252 - 21,576,789 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11721,261,038 - 21,264,727 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01721,271,854 - 21,275,545 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01721,318,757 - 21,322,449 (+)NCBIUU_Cfam_GSD_1.0
Dnajc5g
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629265,555,834 - 65,559,688 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364935,280,732 - 5,282,898 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364935,281,751 - 5,283,248 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DNAJC5G
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11480,331,124 - 80,337,153 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1480,332,347 - 80,336,004 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604531,815,755 - 31,820,932 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dnajc5g
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247389,368,698 - 9,370,424 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247389,367,909 - 9,371,817 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in DNAJC5G
239 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000076645   ⟹   ENSSSCP00000061980
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl3111,853,664 - 111,857,677 (-)Ensembl
RefSeq Acc Id: XM_021087695   ⟹   XP_020943354
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.13111,853,579 - 111,863,610 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002342808
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.13111,859,145 - 111,863,610 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002342809
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.13111,853,579 - 111,863,606 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002342810
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.13111,853,662 - 111,863,608 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020943354 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000061980
  ENSSSCP00000061980.1
Reference Protein Sequences
RefSeq Acc Id: XP_020943354   ⟸   XM_021087695
- UniProtKB: A0A5G2QCY2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000061980   ⟸   ENSSSCT00000076645
Protein Domains
J


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000043825 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000076645 ENTREZGENE
  ENSSSCT00000076645.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.110 UniProtKB/TrEMBL
InterPro DnaJ_domain UniProtKB/TrEMBL
  DnaJ_domain_CS UniProtKB/TrEMBL
  J_dom_sf UniProtKB/TrEMBL
NCBI Gene DNAJC5G ENTREZGENE
PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 5 HOMOLOG UniProtKB/TrEMBL
  DNAJ HOMOLOG SUBFAMILY C MEMBER 5G UniProtKB/TrEMBL
Pfam DnaJ UniProtKB/TrEMBL
PRINTS JDOMAIN UniProtKB/TrEMBL
PROSITE DNAJ_1 UniProtKB/TrEMBL
  DNAJ_2 UniProtKB/TrEMBL
SMART DnaJ UniProtKB/TrEMBL
Superfamily-SCOP SSF46565 UniProtKB/TrEMBL
UniProt A0A5G2QCY2 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:106575 ENTREZGENE