LOC100153163 (MHC class I polypeptide-related sequence B) - Rat Genome Database

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Gene: LOC100153163 (MHC class I polypeptide-related sequence B) Sus scrofa
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Symbol: LOC100153163
Name: MHC class I polypeptide-related sequence B
RGD ID: 14026573
Description: ENCODES a protein that exhibits beta-2-microglobulin binding (ortholog); natural killer cell lectin-like receptor binding (ortholog); receptor ligand activity (ortholog); INVOLVED IN defense response to bacterium (ortholog); defense response to virus (ortholog); DNA damage response (ortholog); ASSOCIATED WITH coronary aneurysm (ortholog); hepatocellular carcinoma (ortholog); megacolon (ortholog); FOUND IN cell surface (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: MHC class I-related chain; MHC class I-related protein; MIC2; Susc-MIC1; Susc-MIC2
RGD Orthologs
Human
Rat
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1723,596,900 - 23,610,431 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2727,222,832 - 27,236,381 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
LOC100153163
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1723,596,900 - 23,610,431 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2727,222,832 - 27,236,381 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MICA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38631,400,711 - 31,415,315 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl631,399,784 - 31,415,315 (+)EnsemblGRCh38hg38GRCh38
GRCh37631,368,488 - 31,383,092 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36631,479,350 - 31,491,069 (+)NCBINCBI36Build 36hg18NCBI36
Build 34631,479,349 - 31,491,069NCBI
Celera632,969,923 - 33,031,516 (+)NCBICelera
Cytogenetic Map6p21.33NCBI
HuRef631,157,962 - 31,173,490 (+)NCBIHuRef
CHM1_1631,369,533 - 31,385,168 (+)NCBICHM1_1
T2T-CHM13v2.0631,256,597 - 31,271,201 (+)NCBIT2T-CHM13v2.0
Mill1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8187,500,591 - 87,526,983 (+)NCBIGRCr8
mRatBN7.2178,372,798 - 78,398,932 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl178,372,802 - 78,398,930 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx183,761,826 - 83,787,919 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0192,318,175 - 92,344,204 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0185,516,941 - 85,543,040 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0179,631,266 - 79,657,943 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl179,631,668 - 79,657,941 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0180,887,094 - 80,914,226 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4178,075,659 - 78,102,700 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1178,153,769 - 78,174,435 (+)NCBI
Celera172,840,406 - 72,866,591 (+)NCBICelera
Cytogenetic Map1q21NCBI
MICA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ROS_Cfam_1.0121,107,161 - 1,110,593 (+)NCBIROS_Cfam_1.0
UNSW_CanFamBas_1.0121,034,631 - 1,038,065 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0121,101,167 - 1,104,600 (+)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in LOC100153163
343 total Variants

Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003128306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013977606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH011312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH014096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH014097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH014098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH014099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH014100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH014101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH014102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT737281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GFLN01062911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM514686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM514687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM514688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM514689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM514690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM514691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM514692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM514693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM514694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM514695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_003128306   ⟹   XP_003128354
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1723,596,900 - 23,610,428 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013977606   ⟹   XP_013833060
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1723,599,286 - 23,610,431 (+)NCBI
Sequence:
RefSeq Acc Id: XP_003128354   ⟸   XM_003128306
- Peptide Label: isoform X2
- UniProtKB: F1RTI3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013833060   ⟸   XM_013977606
- Peptide Label: isoform X1
- UniProtKB: A0A480KSN9 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Gene3D-CATH Immunoglobulins UniProtKB/TrEMBL
  MHC class I-like antigen recognition-like UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig/MHC_CS UniProtKB/TrEMBL
  Ig_C1-set UniProtKB/TrEMBL
  MHC_I-like_Ag-recog UniProtKB/TrEMBL
  MHC_I-like_Ag-recog_sf UniProtKB/TrEMBL
  MHC_I/II-like_Ag-recog UniProtKB/TrEMBL
NCBI Gene LOC100153163 ENTREZGENE
PANTHER MHC CLASS I POLYPEPTIDE-RELATED SEQUENCE A-RELATED UniProtKB/TrEMBL
  MHC CLASS I-RELATED UniProtKB/TrEMBL
Pfam C1-set UniProtKB/TrEMBL
  MHC_I UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
  IG_MHC UniProtKB/TrEMBL
SMART IGc1 UniProtKB/TrEMBL
Superfamily-SCOP Immunoglobulin UniProtKB/TrEMBL
  MHC antigen-recognition domain UniProtKB/TrEMBL
UniProt A0A480KSN9 ENTREZGENE, UniProtKB/TrEMBL
  F1RTI3 ENTREZGENE, UniProtKB/TrEMBL