STOX1 (storkhead box 1) - Rat Genome Database

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Gene: STOX1 (storkhead box 1) Sus scrofa
Analyze
Symbol: STOX1
Name: storkhead box 1
RGD ID: 14024625
Description: ENCODES a protein that exhibits RNA polymerase II transcription regulatory region sequence-specific DNA binding (inferred); INVOLVED IN cellular response to nitrosative stress (inferred); inner ear development (inferred); negative regulation of gene expression (inferred); ASSOCIATED WITH Alzheimer's disease (ortholog); Cardiomegaly (ortholog); genetic disease (ortholog); FOUND IN cell cortex (inferred); centrosome (inferred); cytoplasm (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: storkhead-box protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1471,928,399 - 71,985,233 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11471,927,387 - 71,985,239 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21477,943,033 - 78,000,558 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cell cortex  (IEA)
centrosome  (IEA)
cytoplasm  (IBA,IEA)
cytosol  (IEA)
fibrillar center  (IEA)
nucleoplasm  (IEA)
nucleus  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
STOX1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1471,928,399 - 71,985,233 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11471,927,387 - 71,985,239 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21477,943,033 - 78,000,558 (+)NCBISscrofa10.2Sscrofa10.2susScr3
STOX1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381068,827,531 - 68,895,432 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1068,827,531 - 68,895,432 (+)EnsemblGRCh38hg38GRCh38
GRCh371070,587,288 - 70,655,188 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361070,257,387 - 70,322,821 (+)NCBINCBI36Build 36hg18NCBI36
Celera1063,863,183 - 63,931,097 (+)NCBICelera
Cytogenetic Map10q22.1NCBI
HuRef1064,588,712 - 64,656,710 (+)NCBIHuRef
CHM1_11070,869,061 - 70,936,835 (+)NCBICHM1_1
T2T-CHM13v2.01069,696,680 - 69,764,246 (+)NCBIT2T-CHM13v2.0
Stox1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391062,494,822 - 62,561,907 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1062,494,822 - 62,561,907 (-)EnsemblGRCm39 Ensembl
GRCm381062,659,043 - 62,726,094 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1062,659,043 - 62,726,128 (-)EnsemblGRCm38mm10GRCm38
MGSCv371062,122,170 - 62,188,847 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361062,054,400 - 62,121,485 (-)NCBIMGSCv36mm8
Celera1063,761,116 - 63,769,635 (-)NCBICelera
Cytogenetic Map10B4NCBI
cM Map1032.45NCBI
Stox1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82031,140,993 - 31,209,126 (-)NCBIGRCr8
mRatBN7.22030,598,284 - 30,666,371 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2030,598,168 - 30,666,939 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2031,609,607 - 31,677,074 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02031,000,521 - 31,067,993 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02031,737,328 - 31,804,804 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02032,276,857 - 32,353,677 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2032,276,658 - 32,353,677 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02034,061,421 - 34,137,583 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42029,904,966 - 29,977,218 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12029,918,765 - 29,991,018 (-)NCBI
Celera2032,017,664 - 32,084,673 (-)NCBICelera
Cytogenetic Map20q11NCBI
Stox1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543722,124,272 - 22,165,848 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543722,122,296 - 22,165,848 (-)NCBIChiLan1.0ChiLan1.0
STOX1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2880,983,717 - 81,038,569 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11080,989,038 - 81,043,890 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01065,304,649 - 65,359,501 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11067,882,669 - 67,896,410 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1067,882,654 - 67,894,039 (+)Ensemblpanpan1.1panPan2
STOX1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1420,013,893 - 20,065,480 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl420,014,007 - 20,060,394 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha420,144,988 - 20,196,158 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0420,286,922 - 20,338,157 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl420,286,792 - 20,344,928 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1420,187,255 - 20,238,841 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0420,390,704 - 20,441,873 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0420,733,585 - 20,784,970 (+)NCBIUU_Cfam_GSD_1.0
Stox1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721361,006,877 - 61,061,338 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365219,500,152 - 9,554,082 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365219,500,443 - 9,554,082 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STOX1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1962,518,872 - 62,589,107 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl962,524,049 - 62,533,821 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604823,265,596 - 23,336,604 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stox1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247543,111,269 - 3,122,425 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247543,110,951 - 3,119,511 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in STOX1
1597 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 3 3 1
Low 1 2 16 1
Below cutoff 9 1 4 2 4 1 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000061669   ⟹   ENSSSCP00000036868
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1471,928,399 - 71,985,233 (+)Ensembl
RefSeq Acc Id: XM_001928627   ⟹   XP_001928662
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11471,927,387 - 71,985,239 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_001928662 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000036868
  ENSSSCP00000036868.1
  ENSSSCP00035016324.1
Reference Protein Sequences
RefSeq Acc Id: XP_001928662   ⟸   XM_001928627
- UniProtKB: A0A286ZZH2 (UniProtKB/TrEMBL),   A0A8D0ZCL8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000036868   ⟸   ENSSSCT00000061669
Protein Domains
Winged helix Storkhead-box1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000010245 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00035030828 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000061669 ENTREZGENE
  ENSSSCT00000061669.2 UniProtKB/TrEMBL
  ENSSSCT00035040811.1 UniProtKB/TrEMBL
InterPro Storkhead-box_winged-helix UniProtKB/TrEMBL
  STOX1/2 UniProtKB/TrEMBL
KEGG Report ssc:100157127 UniProtKB/TrEMBL
NCBI Gene STOX1 ENTREZGENE
PANTHER PTHR22437 UniProtKB/TrEMBL
  STORKHEAD-BOX PROTEIN 1 UniProtKB/TrEMBL
Pfam Stork_head UniProtKB/TrEMBL
UniProt A0A286ZZH2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0ZCL8 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:93569 ENTREZGENE