LOC100738971 (IQ domain-containing protein F5-like) - Rat Genome Database

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Gene: LOC100738971 (IQ domain-containing protein F5-like) Sus scrofa
Analyze
Symbol: LOC100738971
Name: IQ domain-containing protein F5-like
RGD ID: 14018692
Description: ENCODES a protein that exhibits calmodulin binding (inferred); ASSOCIATED WITH Hirschsprung's disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: IQ domain-containing protein F1-like
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11334,029,459 - 34,032,458 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21337,223,170 - 37,232,666 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
LOC100738971
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11334,029,459 - 34,032,458 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21337,223,170 - 37,232,666 (+)NCBISscrofa10.2Sscrofa10.2susScr3
IQCF5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38351,873,721 - 51,875,601 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl351,873,721 - 51,875,601 (-)EnsemblGRCh38hg38GRCh38
GRCh37351,907,737 - 51,909,617 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36351,882,775 - 51,884,640 (-)NCBINCBI36Build 36hg18NCBI36
Celera351,886,603 - 51,888,467 (-)NCBICelera
Cytogenetic Map3p21.2NCBI
HuRef351,971,459 - 51,973,323 (-)NCBIHuRef
CHM1_1351,860,437 - 51,862,300 (-)NCBICHM1_1
T2T-CHM13v2.0351,906,682 - 51,908,563 (-)NCBIT2T-CHM13v2.0
Iqcf5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399106,391,772 - 106,393,202 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9106,391,772 - 106,393,209 (+)EnsemblGRCm39 Ensembl
GRCm389106,514,573 - 106,516,003 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9106,514,573 - 106,516,010 (+)EnsemblGRCm38mm10GRCm38
MGSCv379106,416,904 - 106,418,334 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369106,372,674 - 106,374,105 (+)NCBIMGSCv36mm8
Celera9106,133,331 - 106,134,763 (+)NCBICelera
Cytogenetic Map9F1NCBI
cM Map957.68NCBI
Iqcf5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88116,030,180 - 116,031,565 (+)NCBIGRCr8
mRatBN7.28107,151,477 - 107,152,862 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8107,151,462 - 107,152,869 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8112,774,557 - 112,775,942 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08110,973,734 - 110,975,119 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08108,816,517 - 108,817,902 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08115,213,469 - 115,214,854 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8115,213,471 - 115,214,895 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08114,577,756 - 114,579,141 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48111,657,174 - 111,658,559 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera8106,463,018 - 106,464,403 (+)NCBICelera
Cytogenetic Map8q32NCBI
IQCF5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2251,870,266 - 51,872,147 (-)NCBINHGRI_mPanPan1-v2
PanPan1.1 Ensembl353,047,168 - 53,049,032 (-)Ensemblpanpan1.1panPan2
IQCF5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12037,814,635 - 37,816,564 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2037,814,697 - 37,816,563 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2037,794,695 - 37,796,599 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02038,163,813 - 38,165,717 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2038,163,850 - 38,165,716 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12037,527,404 - 37,529,308 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02037,936,067 - 37,937,971 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02038,221,263 - 38,223,167 (+)NCBIUU_Cfam_GSD_1.0
IQCF5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12213,243,667 - 13,266,144 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2213,243,679 - 13,244,122 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041153,690,724 - 153,691,223 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in LOC100738971
41 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

circulatory system endocrine system nervous system renal system reproductive system
High
Medium
Low 1 1 1
Below cutoff 1 3

Sequence


Reference Sequences
RefSeq Acc Id: XM_021071134   ⟹   XP_020926793
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11334,029,459 - 34,032,456 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021071135   ⟹   XP_020926794
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11334,029,459 - 34,032,458 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020926793 (Get FASTA)   NCBI Sequence Viewer  
  XP_020926794 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00050020314.1
Reference Protein Sequences
RefSeq Acc Id: XP_020926794   ⟸   XM_021071135
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020926793   ⟸   XM_021071134
- Peptide Label: isoform X1
- UniProtKB: A0A8D1MCB2 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00050036250 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00050048749.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.190 UniProtKB/TrEMBL
InterPro IQ_motif_EF-hand-BS UniProtKB/TrEMBL
  IQCF UniProtKB/TrEMBL
NCBI Gene LOC100738971 ENTREZGENE
PANTHER IQ MOTIF CONTAINING F UniProtKB/TrEMBL
  IQ MOTIF-CONTAINING F4 UniProtKB/TrEMBL
Pfam PF00612 UniProtKB/TrEMBL
PROSITE PS50096 UniProtKB/TrEMBL
SMART SM00015 UniProtKB/TrEMBL
UniProt A0A8D1MCB2 ENTREZGENE, UniProtKB/TrEMBL