MRPS25 (mitochondrial ribosomal protein S25) - Rat Genome Database

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Gene: MRPS25 (mitochondrial ribosomal protein S25) Sus scrofa
Analyze
Symbol: MRPS25
Name: mitochondrial ribosomal protein S25
RGD ID: 14012625
Description: ENCODES a protein that exhibits structural constituent of ribosome (inferred); ASSOCIATED WITH 3p deletion syndrome (ortholog); combined oxidative phosphorylation deficiency 50 (ortholog); FOUND IN mitochondrion (inferred); ribonucleoprotein complex (inferred); ribosome (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 28S ribosomal protein S25, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1369,441,116 - 69,467,895 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11369,441,100 - 69,465,912 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21376,734,137 - 76,739,069 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:30032202  


Genomics

Comparative Map Data
MRPS25
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1369,441,116 - 69,467,895 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11369,441,100 - 69,465,912 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21376,734,137 - 76,739,069 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MRPS25
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38315,042,251 - 15,065,315 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl315,009,611 - 15,065,339 (-)EnsemblGRCh38hg38GRCh38
GRCh37315,083,758 - 15,106,822 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36315,065,023 - 15,081,820 (-)NCBINCBI36Build 36hg18NCBI36
Build 34315,065,023 - 15,081,820NCBI
Celera315,028,290 - 15,045,083 (-)NCBICelera
Cytogenetic Map3p25.1NCBI
HuRef315,025,627 - 15,042,423 (-)NCBIHuRef
CHM1_1315,040,970 - 15,057,765 (-)NCBICHM1_1
T2T-CHM13v2.0315,044,674 - 15,067,729 (-)NCBIT2T-CHM13v2.0
Mrps25
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39692,146,493 - 92,161,004 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl692,146,506 - 92,161,014 (-)EnsemblGRCm39 Ensembl
GRCm38692,169,512 - 92,184,023 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl692,169,525 - 92,184,033 (-)EnsemblGRCm38mm10GRCm38
MGSCv37692,119,506 - 92,134,017 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36692,135,016 - 92,149,527 (-)NCBIMGSCv36mm8
Celera694,065,055 - 94,079,564 (-)NCBICelera
Cytogenetic Map6D1NCBI
cM Map641.03NCBI
Mrps25
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84126,225,449 - 126,237,212 (-)NCBIGRCr8
mRatBN7.24124,668,320 - 124,680,086 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4124,668,094 - 124,680,057 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4130,136,129 - 130,147,845 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04125,910,562 - 125,922,278 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04124,535,095 - 124,546,811 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04124,036,654 - 124,048,417 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4124,036,655 - 124,048,417 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04189,213,384 - 189,225,147 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44126,351,113 - 126,362,876 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14126,595,954 - 126,607,717 (-)NCBI
Celera4113,586,158 - 113,597,921 (-)NCBICelera
Cytogenetic Map4q34NCBI
Mrps25
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542917,432,443 - 17,436,247 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542917,424,570 - 17,436,247 (-)NCBIChiLan1.0ChiLan1.0
MRPS25
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2214,993,563 - 15,049,451 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1314,998,326 - 15,054,212 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0314,934,006 - 14,989,899 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1315,305,642 - 15,328,594 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl315,313,061 - 15,328,594 (-)Ensemblpanpan1.1panPan2
MRPS25
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1205,141,812 - 5,152,507 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl205,141,812 - 5,152,513 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha205,178,749 - 5,189,445 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0205,162,932 - 5,173,636 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl205,162,932 - 5,173,642 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1204,881,211 - 4,891,908 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0205,231,549 - 5,242,629 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0205,215,599 - 5,226,296 (-)NCBIUU_Cfam_GSD_1.0
Mrps25
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494218,324,810 - 18,350,536 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936602526,730 - 584,859 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936602559,127 - 584,853 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MRPS25
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12250,985,398 - 50,997,596 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2250,984,775 - 50,997,581 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041115,494,249 - 115,508,495 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mrps25
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624872948,073 - 950,899 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in MRPS25
540 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 2 2 3 1
Low 8 4 3 3 20 2 3 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000040136   ⟹   ENSSSCP00000039182
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1369,441,116 - 69,463,740 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000081703   ⟹   ENSSSCP00000065116
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1369,441,142 - 69,467,895 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000083605   ⟹   ENSSSCP00000068599
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1369,441,116 - 69,462,527 (+)Ensembl
RefSeq Acc Id: XM_003358532   ⟹   XP_003358580
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11369,441,100 - 69,465,912 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_003358580   ⟸   XM_003358532
- UniProtKB: A0A0M3KL55 (UniProtKB/TrEMBL),   A0A8D0PWZ4 (UniProtKB/TrEMBL),   A0A4X1UCG3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000039182   ⟸   ENSSSCT00000040136
RefSeq Acc Id: ENSSSCP00000068599   ⟸   ENSSSCT00000083605
RefSeq Acc Id: ENSSSCP00000065116   ⟸   ENSSSCT00000081703
Protein Domains
Ribosomal protein/NADH dehydrogenase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000034318 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015067940 UniProtKB/TrEMBL
  ENSSSCG00025028492 UniProtKB/TrEMBL
  ENSSSCG00030043832 UniProtKB/TrEMBL
  ENSSSCG00035076814 UniProtKB/TrEMBL
  ENSSSCG00040055912 UniProtKB/TrEMBL
  ENSSSCG00045014315 UniProtKB/TrEMBL
  ENSSSCG00050070975 UniProtKB/TrEMBL
  ENSSSCG00055021889 UniProtKB/TrEMBL
  ENSSSCG00060048466 UniProtKB/TrEMBL
  ENSSSCG00065024206 UniProtKB/TrEMBL
  ENSSSCG00070015623 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000040136.3 UniProtKB/TrEMBL
  ENSSSCT00000081703 ENTREZGENE
  ENSSSCT00000081703.1 UniProtKB/TrEMBL
  ENSSSCT00000083605.1 UniProtKB/TrEMBL
  ENSSSCT00015091087.1 UniProtKB/TrEMBL
  ENSSSCT00025038684.1 UniProtKB/TrEMBL
  ENSSSCT00030061125.1 UniProtKB/TrEMBL
  ENSSSCT00035104565.1 UniProtKB/TrEMBL
  ENSSSCT00040075775.1 UniProtKB/TrEMBL
  ENSSSCT00045024396.1 UniProtKB/TrEMBL
  ENSSSCT00050096788.1 UniProtKB/TrEMBL
  ENSSSCT00055043038.1 UniProtKB/TrEMBL
  ENSSSCT00060065810.1 UniProtKB/TrEMBL
  ENSSSCT00065032266.1 UniProtKB/TrEMBL
  ENSSSCT00070030650.1 UniProtKB/TrEMBL
Gene3D-CATH Glutaredoxin UniProtKB/TrEMBL
InterPro MRPS25 UniProtKB/TrEMBL
  Ribosome/NADH_DH UniProtKB/TrEMBL
  Thioredoxin-like_sf UniProtKB/TrEMBL
NCBI Gene MRPS25 ENTREZGENE
PANTHER 28S RIBOSOMAL PROTEIN S25, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR13274 UniProtKB/TrEMBL
Pfam L51_S25_CI-B8 UniProtKB/TrEMBL
SMART L51_S25_CI-B8 UniProtKB/TrEMBL
Superfamily-SCOP SSF52833 UniProtKB/TrEMBL
UniProt A0A0M3KL55 ENTREZGENE, UniProtKB/TrEMBL
  A0A287A5Z7_PIG UniProtKB/TrEMBL
  A0A4X1UCG3 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2RD33_PIG UniProtKB/TrEMBL
  A0A8D0PWZ4 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:90391 ENTREZGENE