KCNJ9 (potassium inwardly rectifying channel subfamily J member 9) - Rat Genome Database

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Gene: KCNJ9 (potassium inwardly rectifying channel subfamily J member 9) Sus scrofa
Analyze
Symbol: KCNJ9
Name: potassium inwardly rectifying channel subfamily J member 9
RGD ID: 14011731
Description: ENCODES a protein that exhibits PDZ domain binding (ortholog); INVOLVED IN monoatomic cation transmembrane transport (inferred); monoatomic ion transmembrane transport (inferred); potassium ion import across plasma membrane (inferred); ASSOCIATED WITH autoimmune interstitial lung, joint, and kidney disease (ortholog); EAST syndrome (ortholog); familial hemiplegic migraine (ortholog); FOUND IN parallel fiber to Purkinje cell synapse (ortholog); presynaptic membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: G protein-activated inward rectifier potassium channel 3; potassium inwardly-rectifying channel, subfamily J, member 9; potassium voltage-gated channel subfamily J member 9
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl490,397,850 - 90,412,373 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1490,402,042 - 90,412,426 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2498,346,474 - 98,353,846 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
KCNJ9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl490,397,850 - 90,412,373 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1490,402,042 - 90,412,426 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2498,346,474 - 98,353,846 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KCNJ9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381160,081,538 - 160,090,563 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1160,081,538 - 160,090,563 (+)EnsemblGRCh38hg38GRCh38
GRCh371160,051,328 - 160,060,353 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361158,317,984 - 158,325,836 (+)NCBINCBI36Build 36hg18NCBI36
Build 341156,864,432 - 156,872,285NCBI
Celera1133,120,144 - 133,127,996 (+)NCBICelera
Cytogenetic Map1q23.2NCBI
HuRef1131,408,475 - 131,416,327 (+)NCBIHuRef
CHM1_11161,446,723 - 161,454,597 (+)NCBICHM1_1
T2T-CHM13v2.01159,218,495 - 159,227,640 (+)NCBIT2T-CHM13v2.0
Kcnj9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391172,148,075 - 172,156,889 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1172,148,068 - 172,156,885 (-)EnsemblGRCm39 Ensembl
GRCm381172,320,508 - 172,329,322 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1172,320,501 - 172,329,318 (-)EnsemblGRCm38mm10GRCm38
MGSCv371174,251,164 - 174,259,394 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361174,158,762 - 174,165,957 (-)NCBIMGSCv36mm8
Celera1175,174,591 - 175,182,663 (-)NCBICelera
Cytogenetic Map1H3NCBI
cM Map179.66NCBI
Kcnj9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81387,313,191 - 87,320,293 (-)NCBIGRCr8
mRatBN7.21384,780,826 - 84,787,928 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1384,779,741 - 84,787,928 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1387,284,139 - 87,291,241 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01388,684,415 - 88,691,517 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01385,868,710 - 85,875,816 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01390,703,046 - 90,710,148 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1390,703,036 - 90,710,287 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01395,224,229 - 95,231,331 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41388,311,500 - 88,318,875 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11388,500,392 - 88,507,759 (-)NCBI
Celera1384,391,114 - 84,398,216 (-)NCBICelera
RH 3.4 Map13561.5RGD
Cytogenetic Map13q24NCBI
Kcnj9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546811,868,535 - 11,877,298 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546811,868,358 - 11,877,298 (+)NCBIChiLan1.0ChiLan1.0
KCNJ9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2189,763,359 - 89,821,789 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1189,498,393 - 89,561,800 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01135,433,895 - 135,447,397 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11139,356,387 - 139,365,444 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1139,356,387 - 139,365,444 (+)Ensemblpanpan1.1panPan2
KCNJ9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13822,100,627 - 22,104,165 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3822,100,621 - 22,104,167 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3822,175,211 - 22,182,323 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03822,219,512 - 22,226,777 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3822,219,550 - 22,224,069 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13822,123,752 - 22,130,987 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03822,520,200 - 22,527,518 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03822,929,513 - 22,936,694 (-)NCBIUU_Cfam_GSD_1.0
Kcnj9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244050586,209,368 - 6,218,113 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936740538,688 - 545,247 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936740536,397 - 545,137 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KCNJ9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1203,853,906 - 3,913,049 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl203,856,705 - 3,860,665 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660382,912,803 - 2,920,292 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kcnj9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247941,159,930 - 1,170,838 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247941,161,336 - 1,171,321 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in KCNJ9
216 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

nervous system
High
Medium 1
Low 19
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000047507   ⟹   ENSSSCP00000046754
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl490,397,850 - 90,412,373 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000070868   ⟹   ENSSSCP00000069389
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl490,401,982 - 90,430,160 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000082778   ⟹   ENSSSCP00000072352
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl490,404,406 - 90,412,373 (-)Ensembl
RefSeq Acc Id: XM_001929061   ⟹   XP_001929096
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1490,402,042 - 90,412,426 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_001929096   ⟸   XM_001929061
- UniProtKB: A0A5G2R5J2 (UniProtKB/TrEMBL),   A0A287ASB4 (UniProtKB/TrEMBL),   A0A8D0QKJ6 (UniProtKB/TrEMBL),   A0A8D0NET0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000069389   ⟸   ENSSSCT00000070868
RefSeq Acc Id: ENSSSCP00000046754   ⟸   ENSSSCT00000047507
RefSeq Acc Id: ENSSSCP00000072352   ⟸   ENSSSCT00000082778
Protein Domains
Inward rectifier potassium channel C-terminal   Potassium channel inwardly rectifying transmembrane


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000006393 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005004147 UniProtKB/TrEMBL
  ENSSSCG00015030052 UniProtKB/TrEMBL
  ENSSSCG00025005123 UniProtKB/TrEMBL
  ENSSSCG00030027200 UniProtKB/TrEMBL
  ENSSSCG00035017910 UniProtKB/TrEMBL
  ENSSSCG00040022226 UniProtKB/TrEMBL
  ENSSSCG00045016173 UniProtKB/TrEMBL
  ENSSSCG00050019217 UniProtKB/TrEMBL
  ENSSSCG00055028863 UniProtKB/TrEMBL
  ENSSSCG00060055679 UniProtKB/TrEMBL
  ENSSSCG00065012420 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000047507.3 UniProtKB/TrEMBL
  ENSSSCT00000082778 ENTREZGENE
  ENSSSCT00000082778.2 UniProtKB/TrEMBL
  ENSSSCT00005006097.1 UniProtKB/TrEMBL
  ENSSSCT00015039839.1 UniProtKB/TrEMBL
  ENSSSCT00025006904.1 UniProtKB/TrEMBL
  ENSSSCT00030038036.1 UniProtKB/TrEMBL
  ENSSSCT00035023068.1 UniProtKB/TrEMBL
  ENSSSCT00040029791.1 UniProtKB/TrEMBL
  ENSSSCT00045027489.1 UniProtKB/TrEMBL
  ENSSSCT00050025940.1 UniProtKB/TrEMBL
  ENSSSCT00055057265.1 UniProtKB/TrEMBL
  ENSSSCT00060075846.1 UniProtKB/TrEMBL
  ENSSSCT00065016535.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.70 UniProtKB/TrEMBL
  2.60.40.1400 UniProtKB/TrEMBL
InterPro Ig_E-set UniProtKB/TrEMBL
  IRK_C UniProtKB/TrEMBL
  K_chnl_inward-rec_Kir UniProtKB/TrEMBL
  K_chnl_inward-rec_Kir3.3 UniProtKB/TrEMBL
  K_chnl_inward-rec_Kir_cyto UniProtKB/TrEMBL
  Kir_TM UniProtKB/TrEMBL
KEGG Report ssc:100152828 UniProtKB/TrEMBL
NCBI Gene KCNJ9 ENTREZGENE
PANTHER PTHR11767 UniProtKB/TrEMBL
  PTHR11767:SF17 UniProtKB/TrEMBL
Pfam IRK UniProtKB/TrEMBL
  IRK_C UniProtKB/TrEMBL
PIRSF GIRK_kir UniProtKB/TrEMBL
PRINTS KIR33CHANNEL UniProtKB/TrEMBL
  KIRCHANNEL UniProtKB/TrEMBL
Superfamily-SCOP SSF81296 UniProtKB/TrEMBL
  Voltage-gated potassium channels UniProtKB/TrEMBL
UniProt A0A287ASB4 ENTREZGENE
  A0A5G2R5J2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0NET0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0QKJ6 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A287ASB4 UniProtKB/TrEMBL
VGNC ID VGNC:89362 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-07-23 KCNJ9  potassium inwardly rectifying channel subfamily J member 9  KCNJ9  potassium voltage-gated channel subfamily J member 9  Symbol and/or name change 5135510 APPROVED