TTC4 (tetratricopeptide repeat domain 4) - Rat Genome Database

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Gene: TTC4 (tetratricopeptide repeat domain 4) Sus scrofa
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Symbol: TTC4
Name: tetratricopeptide repeat domain 4
RGD ID: 14004931
Description: ENCODES a protein that exhibits Hsp70 protein binding (inferred); Hsp90 protein binding (inferred); INVOLVED IN defense response to virus (inferred); innate immune response (inferred); protein folding (inferred); FOUND IN cytoplasm (inferred); cytosol (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tetratricopeptide repeat protein 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6157,616,502 - 157,651,655 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16157,616,499 - 157,651,676 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26145,680,005 - 145,715,186 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytosol  (IEA)
nucleus  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074  


Genomics

Comparative Map Data
TTC4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6157,616,502 - 157,651,655 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16157,616,499 - 157,651,676 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26145,680,005 - 145,715,186 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TTC4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38154,715,861 - 54,742,657 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl154,715,861 - 54,742,657 (+)EnsemblGRCh38hg38GRCh38
GRCh37155,181,534 - 55,208,330 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36154,954,117 - 54,980,569 (+)NCBINCBI36Build 36hg18NCBI36
Build 34154,893,576 - 54,920,001NCBI
Celera153,469,087 - 53,495,920 (+)NCBICelera
Cytogenetic Map1p32.3NCBI
HuRef153,295,157 - 53,322,784 (+)NCBIHuRef
CHM1_1155,296,858 - 55,323,691 (+)NCBICHM1_1
T2T-CHM13v2.0154,596,115 - 54,622,890 (+)NCBIT2T-CHM13v2.0
Ttc4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394106,514,952 - 106,536,188 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4106,519,453 - 106,536,141 (-)EnsemblGRCm39 Ensembl
GRCm384106,656,806 - 106,679,002 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4106,662,256 - 106,678,944 (-)EnsemblGRCm38mm10GRCm38
MGSCv374106,334,413 - 106,351,549 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364106,160,188 - 106,176,814 (-)NCBIMGSCv36mm8
Celera4105,024,628 - 105,041,763 (-)NCBICelera
Cytogenetic Map4C7NCBI
cM Map449.68NCBI
Ttc4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85126,673,535 - 126,691,203 (-)NCBIGRCr8
mRatBN7.25121,444,712 - 121,462,381 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5121,445,740 - 121,462,287 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5124,063,423 - 124,081,060 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05125,786,475 - 125,804,112 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05125,837,736 - 125,855,373 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05126,264,758 - 126,282,431 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5126,264,105 - 126,282,385 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05130,109,141 - 130,127,441 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45127,746,728 - 127,756,081 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15127,751,976 - 127,761,307 (-)NCBI
Celera5120,201,186 - 120,210,532 (-)NCBICelera
Cytogenetic Map5q34NCBI
Ttc4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554644,629,932 - 4,669,333 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554644,629,061 - 4,669,054 (-)NCBIChiLan1.0ChiLan1.0
TTC4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21172,092,298 - 172,118,317 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11171,233,183 - 171,259,181 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0153,992,074 - 54,018,030 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1155,581,396 - 55,607,646 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl155,581,396 - 55,607,646 (+)Ensemblpanpan1.1panPan2
TTC4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1554,406,216 - 54,431,742 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl554,407,287 - 54,431,687 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha554,475,489 - 54,500,962 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0554,594,550 - 54,619,793 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl554,590,047 - 54,619,822 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1554,590,989 - 54,616,219 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0554,481,088 - 54,506,291 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0554,870,103 - 54,895,370 (-)NCBIUU_Cfam_GSD_1.0
Ttc4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505868,857,176 - 68,884,945 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365226,529,122 - 6,559,292 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365226,525,887 - 6,559,147 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TTC4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12078,193,416 - 78,222,430 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2078,190,147 - 78,222,349 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603339,060,341 - 39,088,741 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ttc4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248625,097,343 - 5,126,537 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248625,097,233 - 5,126,555 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TTC4
1418 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 1 2 2 2 1
Low 10 3 2 3 21 2 2 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000004256   ⟹   ENSSSCP00000004160
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl6157,616,502 - 157,651,655 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000040205   ⟹   ENSSSCP00000047070
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl6157,616,508 - 157,651,655 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000041110   ⟹   ENSSSCP00000057070
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl6157,616,502 - 157,651,655 (-)Ensembl
RefSeq Acc Id: XM_003127973   ⟹   XP_003128021
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.16157,616,499 - 157,651,676 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003128021   ⟸   XM_003127973
- UniProtKB: A0A287BLM8 (UniProtKB/TrEMBL),   A0A8D1RVU2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000047070   ⟸   ENSSSCT00000040205
RefSeq Acc Id: ENSSSCP00000057070   ⟸   ENSSSCT00000041110
RefSeq Acc Id: ENSSSCP00000004160   ⟸   ENSSSCT00000004256
Protein Domains
Cns1/TTC4 wheel


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000003844 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025012866 UniProtKB/TrEMBL
  ENSSSCG00035047789 UniProtKB/TrEMBL
  ENSSSCG00040038859 UniProtKB/TrEMBL
  ENSSSCG00045021050 UniProtKB/TrEMBL
  ENSSSCG00055025437 UniProtKB/TrEMBL
  ENSSSCG00070030135 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000040205.3 UniProtKB/TrEMBL
  ENSSSCT00000041110 ENTREZGENE
  ENSSSCT00000041110.2 UniProtKB/TrEMBL
  ENSSSCT00025017048.1 UniProtKB/TrEMBL
  ENSSSCT00035063637.1 UniProtKB/TrEMBL
  ENSSSCT00040051954.1 UniProtKB/TrEMBL
  ENSSSCT00045035922.1 UniProtKB/TrEMBL
  ENSSSCT00055050255.1 UniProtKB/TrEMBL
  ENSSSCT00070060601.1 UniProtKB/TrEMBL
  ENSSSCT00070060602.1 UniProtKB/TrEMBL
  ENSSSCT00070060603.1 UniProtKB/TrEMBL
  ENSSSCT00070060604.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
InterPro Csn1/TTC4_wheel UniProtKB/TrEMBL
  TPR-like_helical_dom_sf UniProtKB/TrEMBL
  TPR_repeat UniProtKB/TrEMBL
KEGG Report ssc:100513360 UniProtKB/TrEMBL
NCBI Gene TTC4 ENTREZGENE
PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 4 UniProtKB/TrEMBL
  TETRATRICOPEPTIDE REPEAT PROTEIN 4 UniProtKB/TrEMBL
Pfam Wheel UniProtKB/TrEMBL
SMART TPR UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/TrEMBL
UniProt A0A287ASL4_PIG UniProtKB/TrEMBL
  A0A287BLM8 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1W5H3_PIG UniProtKB/TrEMBL
  A0A4X1WB14_PIG UniProtKB/TrEMBL
  A0A4X1WB89_PIG UniProtKB/TrEMBL
  A0A8D1RVU2 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:94554 ENTREZGENE