LOC100624995 (EF-hand calcium-binding domain-containing protein 13-like) - Rat Genome Database

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Gene: LOC100624995 (EF-hand calcium-binding domain-containing protein 13-like) Sus scrofa
Analyze
Symbol: LOC100624995 (Ensembl: EFCAB13)
Name: EF-hand calcium-binding domain-containing protein 13-like (Ensembl:EF-hand calcium binding domain 13)
RGD ID: 14000563
Description: ENCODES a protein that exhibits calcium ion binding (inferred); metal ion binding (inferred); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Bonobo
Dog
Squirrel
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1216,596,550 - 16,674,982 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11216,595,822 - 16,679,453 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21216,535,030 - 16,710,189 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
LOC100624995
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1216,596,550 - 16,674,982 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11216,595,822 - 16,679,453 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21216,535,030 - 16,710,189 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EFCAB13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381747,323,955 - 47,441,312 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1747,323,290 - 47,441,312 (+)EnsemblGRCh38hg38GRCh38
GRCh371745,401,321 - 45,518,678 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361742,756,346 - 42,873,677 (+)NCBINCBI36Build 36hg18NCBI36
Celera1741,851,460 - 41,969,905 (+)NCBICelera
Cytogenetic Map17q21.32NCBI
HuRef1740,779,416 - 40,897,272 (+)NCBIHuRef
CHM1_11745,466,280 - 45,583,568 (+)NCBICHM1_1
T2T-CHM13v2.01748,186,334 - 48,303,979 (+)NCBIT2T-CHM13v2.0
EFCAB13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21917,603,770 - 17,691,043 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11719,568,094 - 19,656,549 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01710,057,252 - 10,109,963 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11710,272,858 - 10,339,633 (-)NCBIpanpan1.1PanPan1.1panPan2
EFCAB13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.198,985,983 - 9,163,028 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha911,133,767 - 11,310,342 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0910,577,713 - 10,755,519 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.199,590,106 - 9,767,626 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0917,754,613 - 17,931,041 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0917,703,495 - 17,830,668 (+)NCBIUU_Cfam_GSD_1.0
Efcab13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560216,185,874 - 16,315,183 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365412,879,415 - 3,010,093 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EFCAB13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11659,230,231 - 59,358,653 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607729,933,380 - 30,069,698 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in LOC100624995
2769 total Variants

Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021066303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSSCT00000078117   ⟹   ENSSSCP00000063012
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1216,596,550 - 16,674,982 (-)Ensembl
RefSeq Acc Id: XM_021066303   ⟹   XP_020921962
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11216,595,822 - 16,679,453 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020921962 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000063012
  ENSSSCP00000063012.2
  ENSSSCP00005044414.1
  ENSSSCP00040019090.1
  ENSSSCP00060047447.1
Reference Protein Sequences
RefSeq Acc Id: XP_020921962   ⟸   XM_021066303
- UniProtKB: A0A8D1E9J4 (UniProtKB/TrEMBL),   A0A8D1X076 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000063012   ⟸   ENSSSCT00000078117
Protein Domains
EF-hand


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000049121 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005044265 UniProtKB/TrEMBL
  ENSSSCG00040033713 UniProtKB/TrEMBL
  ENSSSCG00060077702 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000078117 ENTREZGENE
  ENSSSCT00000078117.2 UniProtKB/TrEMBL
  ENSSSCT00005071252.1 UniProtKB/TrEMBL
  ENSSSCT00040045480.1 UniProtKB/TrEMBL
  ENSSSCT00060107100.1 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
NCBI Gene LOC100624995 ENTREZGENE
PANTHER EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 13 UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
PROSITE EF_HAND_1 UniProtKB/TrEMBL
SMART EFh UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A0A5G2QXS9_PIG UniProtKB/TrEMBL
  A0A8D0M3G0_PIG UniProtKB/TrEMBL
  A0A8D1E9J4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1X076 ENTREZGENE, UniProtKB/TrEMBL