TADA2A (transcriptional adaptor 2A) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: TADA2A (transcriptional adaptor 2A) Sus scrofa
Analyze
Symbol: TADA2A
Name: transcriptional adaptor 2A
RGD ID: 13985595
Description: ENCODES a protein that exhibits histone acetyltransferase activity (ortholog); INVOLVED IN chromatin organization (ortholog); mitotic cell cycle (ortholog); regulation of DNA-templated transcription (ortholog); PARTICIPATES IN RNA polymerase II transcription initiation pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); chromosome 17q12 deletion syndrome (ortholog); FOUND IN ATAC complex (ortholog); SAGA complex (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: transcriptional adapter 2-alpha
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1238,875,250 - 38,928,005 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11238,875,156 - 38,928,011 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21240,496,523 - 40,549,428 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TADA2A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1238,875,250 - 38,928,005 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11238,875,156 - 38,928,011 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21240,496,523 - 40,549,428 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TADA2A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381737,406,886 - 37,479,725 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1737,406,886 - 37,479,725 (+)EnsemblGRCh38hg38GRCh38
GRCh371735,766,977 - 35,839,830 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361732,841,425 - 32,911,339 (+)NCBINCBI36Build 36hg18NCBI36
Celera1732,589,436 - 32,660,208 (+)NCBICelera
Cytogenetic Map17q12NCBI
HuRef1731,705,328 - 31,774,822 (+)NCBIHuRef
CHM1_11735,798,449 - 35,868,684 (+)NCBICHM1_1
T2T-CHM13v2.01738,397,046 - 38,466,403 (+)NCBIT2T-CHM13v2.0
Tada2a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391183,969,746 - 84,020,466 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1183,969,746 - 84,020,426 (-)EnsemblGRCm39 Ensembl
GRCm381184,078,920 - 84,129,644 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1184,078,920 - 84,129,600 (-)EnsemblGRCm38mm10GRCm38
MGSCv371183,892,422 - 83,943,070 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361183,895,115 - 83,945,763 (-)NCBIMGSCv36mm8
Celera1193,684,540 - 93,738,158 (-)NCBICelera
Cytogenetic Map11CNCBI
cM Map1151.29NCBI
Tada2a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81069,463,966 - 69,511,612 (-)NCBIGRCr8
mRatBN7.21068,966,502 - 69,014,149 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1068,966,502 - 69,014,105 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1073,586,475 - 73,634,083 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01073,091,491 - 73,139,094 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01068,555,914 - 68,603,517 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01071,393,701 - 71,441,435 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1071,393,692 - 71,441,389 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01071,307,409 - 71,354,792 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41072,365,950 - 72,413,305 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11072,380,321 - 72,427,675 (-)NCBI
Celera1067,895,248 - 67,942,367 (-)NCBICelera
Cytogenetic Map10q26NCBI
Tada2a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955451549,028 - 587,996 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955451548,373 - 599,739 (-)NCBIChiLan1.0ChiLan1.0
TADA2A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21927,272,723 - 27,347,127 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11729,156,125 - 29,230,503 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01719,595,055 - 19,670,090 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11719,897,659 - 19,967,926 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1719,897,659 - 19,967,926 (-)Ensemblpanpan1.1panPan2
TADA2A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1937,188,193 - 37,241,605 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl937,188,249 - 37,241,512 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha936,412,780 - 36,466,137 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0937,998,547 - 38,052,436 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl937,998,612 - 38,053,162 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1936,779,751 - 36,833,352 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0937,067,593 - 37,120,965 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0937,154,265 - 37,207,674 (+)NCBIUU_Cfam_GSD_1.0
Tada2a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560236,150,457 - 36,201,375 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936490872,945 - 924,614 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936490873,675 - 924,582 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TADA2A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11630,303,858 - 30,374,104 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1630,300,532 - 30,374,078 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660771,025,277 - 1,098,948 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tada2a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248714,415,409 - 4,469,359 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248714,412,703 - 4,478,275 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TADA2A
956 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 4 2 3 5 1 23 1 3 3
Low 6 2 1 1
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000019262   ⟹   ENSSSCP00000018752
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1238,875,213 - 38,928,011 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000019263   ⟹   ENSSSCP00000018753
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1238,875,253 - 38,928,005 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000061144   ⟹   ENSSSCP00000053092
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1238,875,250 - 38,918,113 (+)Ensembl
RefSeq Acc Id: XM_013989944   ⟹   XP_013845398
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11238,878,063 - 38,928,011 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021067335   ⟹   XP_020922994
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11238,875,156 - 38,928,011 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021067336   ⟹   XP_020922995
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11238,875,257 - 38,928,011 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021067337   ⟹   XP_020922996
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11238,875,581 - 38,928,011 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020922994   ⟸   XM_021067335
- Peptide Label: isoform X1
- UniProtKB: A0A4X1T174 (UniProtKB/TrEMBL),   F1S1A4 (UniProtKB/TrEMBL),   A0A5K1TV33 (UniProtKB/TrEMBL),   F1S1A3 (UniProtKB/TrEMBL),   A0A8D0JJ44 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020922995   ⟸   XM_021067336
- Peptide Label: isoform X1
- UniProtKB: A0A4X1T174 (UniProtKB/TrEMBL),   F1S1A4 (UniProtKB/TrEMBL),   A0A5K1TV33 (UniProtKB/TrEMBL),   F1S1A3 (UniProtKB/TrEMBL),   A0A8D0JJ44 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020922996   ⟸   XM_021067337
- Peptide Label: isoform X1
- UniProtKB: A0A4X1T174 (UniProtKB/TrEMBL),   F1S1A4 (UniProtKB/TrEMBL),   A0A5K1TV33 (UniProtKB/TrEMBL),   F1S1A3 (UniProtKB/TrEMBL),   A0A8D0JJ44 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013845398   ⟸   XM_013989944
- Peptide Label: isoform X2
- UniProtKB: A0A4X1T2Q2 (UniProtKB/TrEMBL),   A0A8D0JHL2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000018753   ⟸   ENSSSCT00000019263
RefSeq Acc Id: ENSSSCP00000018752   ⟸   ENSSSCT00000019262
RefSeq Acc Id: ENSSSCP00000053092   ⟸   ENSSSCT00000061144
Protein Domains
HTH myb-type   Myb-like   SANT   SWIRM   ZZ-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000025775 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005024908 UniProtKB/TrEMBL
  ENSSSCG00015012997 UniProtKB/TrEMBL
  ENSSSCG00025073012 UniProtKB/TrEMBL
  ENSSSCG00030046385 UniProtKB/TrEMBL
  ENSSSCG00035056737 UniProtKB/TrEMBL
  ENSSSCG00040076171 UniProtKB/TrEMBL
  ENSSSCG00045008277 UniProtKB/TrEMBL
  ENSSSCG00050073929 UniProtKB/TrEMBL
  ENSSSCG00055025463 UniProtKB/TrEMBL
  ENSSSCG00060078669 UniProtKB/TrEMBL
  ENSSSCG00065063314 UniProtKB/TrEMBL
  ENSSSCG00070005725 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000019263 ENTREZGENE
  ENSSSCT00000019263.5 UniProtKB/TrEMBL
  ENSSSCT00000061144.3 UniProtKB/TrEMBL
  ENSSSCT00005039758.1 UniProtKB/TrEMBL
  ENSSSCT00005039788.1 UniProtKB/TrEMBL
  ENSSSCT00005039825.1 UniProtKB/TrEMBL
  ENSSSCT00005039838.1 UniProtKB/TrEMBL
  ENSSSCT00015017160.1 UniProtKB/TrEMBL
  ENSSSCT00015017182.1 UniProtKB/TrEMBL
  ENSSSCT00015017206.1 UniProtKB/TrEMBL
  ENSSSCT00025100447.1 UniProtKB/TrEMBL
  ENSSSCT00025100652.1 UniProtKB/TrEMBL
  ENSSSCT00025100826.1 UniProtKB/TrEMBL
  ENSSSCT00030064719.1 UniProtKB/TrEMBL
  ENSSSCT00030064810.1 UniProtKB/TrEMBL
  ENSSSCT00035075808.1 UniProtKB/TrEMBL
  ENSSSCT00035075822.1 UniProtKB/TrEMBL
  ENSSSCT00035075830.1 UniProtKB/TrEMBL
  ENSSSCT00040105992.1 UniProtKB/TrEMBL
  ENSSSCT00040105999.1 UniProtKB/TrEMBL
  ENSSSCT00045013899.1 UniProtKB/TrEMBL
  ENSSSCT00045013961.1 UniProtKB/TrEMBL
  ENSSSCT00045014019.1 UniProtKB/TrEMBL
  ENSSSCT00050101143.1 UniProtKB/TrEMBL
  ENSSSCT00050101150.1 UniProtKB/TrEMBL
  ENSSSCT00050101153.1 UniProtKB/TrEMBL
  ENSSSCT00055050328.1 UniProtKB/TrEMBL
  ENSSSCT00055050425.1 UniProtKB/TrEMBL
  ENSSSCT00055050533.1 UniProtKB/TrEMBL
  ENSSSCT00060108770.1 UniProtKB/TrEMBL
  ENSSSCT00060108791.1 UniProtKB/TrEMBL
  ENSSSCT00065086838.1 UniProtKB/TrEMBL
  ENSSSCT00065086845.1 UniProtKB/TrEMBL
  ENSSSCT00065086851.1 UniProtKB/TrEMBL
  ENSSSCT00070010915.1 UniProtKB/TrEMBL
  ENSSSCT00070010930.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
  3.30.60.90 UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
InterPro ADA2-like_ZZ UniProtKB/TrEMBL
  Ada2/TADA2 UniProtKB/TrEMBL
  Homeobox-like_sf UniProtKB/TrEMBL
  Myb_dom UniProtKB/TrEMBL
  SANT/Myb UniProtKB/TrEMBL
  SANT_dom UniProtKB/TrEMBL
  SWIRM UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
  Znf_ZZ UniProtKB/TrEMBL
  Znf_ZZ_sf UniProtKB/TrEMBL
NCBI Gene TADA2A ENTREZGENE
PANTHER TRANSCRIPTIONAL ADAPTER 2-ALPHA UniProtKB/TrEMBL
  TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED UniProtKB/TrEMBL
Pfam Myb_DNA-binding UniProtKB/TrEMBL
  SWIRM UniProtKB/TrEMBL
PIRSF Transcriptional_adaptor_2 UniProtKB/TrEMBL
PROSITE HTH_MYB UniProtKB/TrEMBL
  MYB_LIKE UniProtKB/TrEMBL
  SANT UniProtKB/TrEMBL
  SWIRM UniProtKB/TrEMBL
  ZF_ZZ_2 UniProtKB/TrEMBL
SMART SANT UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
  SSF46689 UniProtKB/TrEMBL
UniProt A0A287BAJ9_PIG UniProtKB/TrEMBL
  A0A4X1T174 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1T2Q2 ENTREZGENE, UniProtKB/TrEMBL
  A0A5K1TV33 ENTREZGENE
  A0A8D0JHL2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0JJ44 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1GX29_PIG UniProtKB/TrEMBL
  F1S1A3 ENTREZGENE, UniProtKB/TrEMBL
  F1S1A4 ENTREZGENE
UniProt Secondary A0A5K1TV33 UniProtKB/TrEMBL
  F1S1A4 UniProtKB/TrEMBL
VGNC ID VGNC:93706 ENTREZGENE