S100A11 (S100 calcium binding protein A11) - Rat Genome Database

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Gene: S100A11 (S100 calcium binding protein A11) Sus scrofa
Analyze
Symbol: S100A11
Name: S100 calcium binding protein A11
RGD ID: 13971773
Description: ENCODES a protein that exhibits calcium ion binding (inferred); calcium-dependent protein binding (inferred); metal ion binding (inferred); INVOLVED IN spermatogenesis (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); COVID-19 (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN cytoplasm (inferred); extracellular space (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: calgizzarin; protein S100-A11; protein S100-C; S100C protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl497,233,811 - 97,243,423 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1497,233,833 - 97,239,081 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24106,194,355 - 106,199,599 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,IEA)
extracellular space  (IBA,IEA)
nucleus  (IEA)
ruffle  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:1722468   PMID:9500989   PMID:10673436   PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
S100A11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl497,233,811 - 97,243,423 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1497,233,833 - 97,239,081 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24106,194,355 - 106,199,599 (+)NCBISscrofa10.2Sscrofa10.2susScr3
S100A11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381152,032,506 - 152,037,004 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1152,032,506 - 152,047,907 (-)EnsemblGRCh38hg38GRCh38
GRCh371152,004,982 - 152,009,480 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361150,271,606 - 150,276,135 (-)NCBINCBI36Build 36hg18NCBI36
Build 341148,818,054 - 148,822,584NCBI
Celera1125,119,617 - 125,124,146 (-)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1123,382,878 - 123,387,406 (-)NCBIHuRef
CHM1_11153,400,219 - 153,404,748 (-)NCBICHM1_1
T2T-CHM13v2.01151,156,052 - 151,160,549 (-)NCBIT2T-CHM13v2.0
S100a11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39393,427,803 - 93,433,595 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl393,427,795 - 93,433,594 (+)EnsemblGRCm39 Ensembl
GRCm38393,520,496 - 93,526,288 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl393,520,488 - 93,526,287 (+)EnsemblGRCm38mm10GRCm38
MGSCv37393,324,418 - 93,330,210 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36394,218,196 - 94,224,175 (+)NCBIMGSCv36mm8
MGSCv36393,605,921 - 93,611,692 (+)NCBIMGSCv36mm8
Celera393,567,964 - 93,573,773 (-)NCBICelera
Cytogenetic Map3F2.1NCBI
cM Map340.51NCBI
S100a11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82181,875,132 - 181,880,542 (+)NCBIGRCr8
mRatBN7.22179,191,688 - 179,197,098 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2179,191,715 - 179,197,044 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2186,756,186 - 186,757,745 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02184,737,864 - 184,739,412 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02179,399,309 - 179,400,870 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02193,863,185 - 193,868,646 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2193,866,951 - 193,868,502 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02210,998,955 - 211,004,415 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42186,620,360 - 186,621,911 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12186,570,465 - 186,572,017 (+)NCBI
Celera2171,089,693 - 171,091,244 (-)NCBICelera
Cytogenetic Map2q34NCBI
S100a11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955589408,319 - 413,971 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955589405,544 - 409,936 (+)NCBIChiLan1.0ChiLan1.0
S100A11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2197,786,078 - 97,790,625 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1197,537,308 - 97,541,842 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01127,391,695 - 127,396,231 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11131,034,588 - 131,039,130 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1131,034,588 - 131,035,882 (-)Ensemblpanpan1.1panPan2
S100A11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11761,020,136 - 61,050,513 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1760,463,767 - 60,494,558 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01762,039,324 - 62,045,008 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11760,865,786 - 60,896,408 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01760,951,962 - 60,982,599 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01761,681,384 - 61,712,178 (-)NCBIUU_Cfam_GSD_1.0
S100A11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12011,613,171 - 11,617,711 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603811,171,651 - 11,176,228 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
S100a11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477219,563,889 - 19,568,766 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477219,563,871 - 19,568,413 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in S100A11
119 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 2 5 3 3
Low 8 2 3 2 23 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000035409   ⟹   ENSSSCP00000028457
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl497,233,811 - 97,243,423 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000067522   ⟹   ENSSSCP00000067377
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl497,237,651 - 97,243,423 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000069678   ⟹   ENSSSCP00000060463
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl497,237,617 - 97,243,423 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000088301   ⟹   ENSSSCP00000073301
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl497,233,499 - 97,243,423 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000088411   ⟹   ENSSSCP00000068063
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl497,233,776 - 97,238,922 (+)Ensembl
RefSeq Acc Id: NM_001004045   ⟹   NP_001004045
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1497,233,833 - 97,239,081 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001004045   ⟸   NM_001004045
- UniProtKB: P31950 (UniProtKB/Swiss-Prot),   A0A8D0Q5U7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000073301   ⟸   ENSSSCT00000088301
RefSeq Acc Id: ENSSSCP00000068063   ⟸   ENSSSCT00000088411
RefSeq Acc Id: ENSSSCP00000028457   ⟸   ENSSSCT00000035409
RefSeq Acc Id: ENSSSCP00000060463   ⟸   ENSSSCT00000069678
RefSeq Acc Id: ENSSSCP00000067377   ⟸   ENSSSCT00000067522
Protein Domains
EF-hand


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000006610 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00005014065 UniProtKB/Swiss-Prot
  ENSSSCG00015075165 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00025050557 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00030069067 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00035054556 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00040073855 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00045008211 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00050001387 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00055026074 UniProtKB/Swiss-Prot
  ENSSSCG00060053238 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00065045455 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00070028026 UniProtKB/Swiss-Prot
Ensembl Transcript ENSSSCT00000035409 ENTREZGENE
  ENSSSCT00000035409.3 UniProtKB/Swiss-Prot
  ENSSSCT00000067522.1 UniProtKB/TrEMBL
  ENSSSCT00000069678.1 UniProtKB/TrEMBL
  ENSSSCT00005021974.1 UniProtKB/Swiss-Prot
  ENSSSCT00015101194.1 UniProtKB/Swiss-Prot
  ENSSSCT00015101437.1 UniProtKB/TrEMBL
  ENSSSCT00025069025.1 UniProtKB/TrEMBL
  ENSSSCT00025069103.1 UniProtKB/Swiss-Prot
  ENSSSCT00030096642.1 UniProtKB/Swiss-Prot
  ENSSSCT00030096716.1 UniProtKB/TrEMBL
  ENSSSCT00035072787.1 UniProtKB/Swiss-Prot
  ENSSSCT00035072817.1 UniProtKB/TrEMBL
  ENSSSCT00040102009.1 UniProtKB/Swiss-Prot
  ENSSSCT00040102064.1 UniProtKB/TrEMBL
  ENSSSCT00045013805.1 UniProtKB/Swiss-Prot
  ENSSSCT00045013877.1 UniProtKB/TrEMBL
  ENSSSCT00050001666.1 UniProtKB/Swiss-Prot
  ENSSSCT00050001703.1 UniProtKB/TrEMBL
  ENSSSCT00055051545.1 UniProtKB/Swiss-Prot
  ENSSSCT00060072493.1 UniProtKB/Swiss-Prot
  ENSSSCT00060072523.1 UniProtKB/TrEMBL
  ENSSSCT00065062206.1 UniProtKB/TrEMBL
  ENSSSCT00065062219.1 UniProtKB/Swiss-Prot
  ENSSSCT00070056208.1 UniProtKB/Swiss-Prot
Gene3D-CATH EF-hand UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S100/CaBP-9k_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S100_Ca-bd_sub UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S100A11 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:445534 UniProtKB/Swiss-Prot
NCBI Gene S100A11 ENTREZGENE
PANTHER PTHR11639:SF60 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S100 CALCIUM-BINDING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam EF-hand_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S_100 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE EF_HAND_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
  S100_CABP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART EFh UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S_100 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A5G2QQA2_PIG UniProtKB/TrEMBL
  A0A5G2QR31_PIG UniProtKB/TrEMBL
  A0A8D0Q5U7 ENTREZGENE, UniProtKB/TrEMBL
  P31950 ENTREZGENE, UniProtKB/Swiss-Prot
VGNC ID VGNC:92537 ENTREZGENE