EMC4 (ER membrane protein complex subunit 4) - Rat Genome Database

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Gene: EMC4 (ER membrane protein complex subunit 4) Sus scrofa
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Symbol: EMC4
Name: ER membrane protein complex subunit 4
RGD ID: 13949904
Description: ENCODES a protein that exhibits membrane insertase activity (ortholog); INVOLVED IN protein folding in endoplasmic reticulum (inferred); protein insertion into ER membrane by stop-transfer membrane-anchor sequence (inferred); tail-anchored membrane protein insertion into ER membrane (inferred); ASSOCIATED WITH agenesis of the corpus callosum with peripheral neuropathy (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN EMC complex (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: TMEM85; transmembrane protein 85
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl780,265,446 - 80,270,691 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1780,266,001 - 80,270,691 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2786,263,162 - 86,267,852 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:15679890   PMID:17145712   PMID:30032202  


Genomics

Comparative Map Data
EMC4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl780,265,446 - 80,270,691 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1780,266,001 - 80,270,691 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2786,263,162 - 86,267,852 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EMC4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381534,225,016 - 34,230,156 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1534,225,013 - 34,230,156 (+)EnsemblGRCh38hg38GRCh38
GRCh371534,517,217 - 34,522,357 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361532,304,537 - 32,309,649 (+)NCBINCBI36Build 36hg18NCBI36
Celera1511,319,812 - 11,324,924 (+)NCBICelera
Cytogenetic Map15q14NCBI
HuRef1511,380,729 - 11,385,840 (+)NCBIHuRef
CHM1_11534,635,273 - 34,640,385 (+)NCBICHM1_1
T2T-CHM13v2.01532,023,277 - 32,028,416 (+)NCBIT2T-CHM13v2.0
Emc4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392112,193,349 - 112,209,532 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2112,193,356 - 112,198,372 (-)EnsemblGRCm39 Ensembl
GRCm382112,363,019 - 112,379,476 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2112,363,011 - 112,368,027 (-)EnsemblGRCm38mm10GRCm38
MGSCv372112,203,176 - 112,208,184 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362112,163,858 - 112,168,866 (-)NCBIMGSCv36mm8
Celera2113,513,993 - 113,519,001 (-)NCBICelera
Cytogenetic Map2E3NCBI
cM Map257.02NCBI
Emc4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83119,624,100 - 119,633,170 (-)NCBIGRCr8
mRatBN7.2399,169,711 - 99,174,730 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl399,169,711 - 99,174,729 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3102,798,035 - 102,803,051 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03111,397,034 - 111,402,050 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03109,092,158 - 109,097,176 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03103,852,139 - 103,857,172 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3103,852,139 - 103,857,158 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03110,445,980 - 110,451,002 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4398,211,695 - 98,216,715 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1398,108,857 - 98,113,032 (-)NCBI
Celera398,155,188 - 98,160,206 (-)NCBICelera
Cytogenetic Map3q35NCBI
Emc4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955416375,736 - 380,846 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955416375,736 - 380,825 (-)NCBIChiLan1.0ChiLan1.0
EMC4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21622,992,823 - 23,012,396 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11527,714,590 - 27,734,013 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01512,734,031 - 12,739,345 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11531,568,617 - 31,573,556 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1531,568,622 - 31,573,547 (+)Ensemblpanpan1.1panPan2
EMC4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.130860,769 - 865,211 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl30861,022 - 865,196 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha30905,197 - 909,647 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.030956,905 - 961,355 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl30957,158 - 961,332 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.130905,156 - 909,605 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0301,004,166 - 1,008,616 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0301,131,781 - 1,136,231 (-)NCBIUU_Cfam_GSD_1.0
Emc4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864079,401,600 - 79,428,268 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366732,723,322 - 2,732,305 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366732,723,563 - 2,732,164 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EMC4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12648,673,792 - 48,678,869 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2648,674,134 - 48,678,862 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604892,223,931 - 92,229,873 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Emc4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624804105,791 - 111,253 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624804105,795 - 111,249 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in EMC4
97 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 8 4 3 5 2 23 2 3 3
Low 2
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000036837   ⟹   ENSSSCP00000031186
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl780,265,446 - 80,270,670 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000075054   ⟹   ENSSSCP00000072211
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl780,266,544 - 80,270,691 (-)Ensembl
RefSeq Acc Id: NM_001243441   ⟹   NP_001230370
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1780,266,001 - 80,270,691 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001230370   ⟸   NM_001243441
- UniProtKB: A0A286ZIA2 (UniProtKB/TrEMBL),   A0A4X1UNA4 (UniProtKB/TrEMBL),   A0A8D1N2I3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000072211   ⟸   ENSSSCT00000075054
RefSeq Acc Id: ENSSSCP00000031186   ⟸   ENSSSCT00000036837


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000039550 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005018504 UniProtKB/TrEMBL
  ENSSSCG00015005093 UniProtKB/TrEMBL
  ENSSSCG00025002192 UniProtKB/TrEMBL
  ENSSSCG00030017328 UniProtKB/TrEMBL
  ENSSSCG00035037258 UniProtKB/TrEMBL
  ENSSSCG00040070523 UniProtKB/TrEMBL
  ENSSSCG00045011702 UniProtKB/TrEMBL
  ENSSSCG00050054373 UniProtKB/TrEMBL
  ENSSSCG00055001237 UniProtKB/TrEMBL
  ENSSSCG00060021764 UniProtKB/TrEMBL
  ENSSSCG00065020125 UniProtKB/TrEMBL
  ENSSSCG00070019083 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000036837 ENTREZGENE
  ENSSSCT00000036837.2 UniProtKB/TrEMBL
  ENSSSCT00000075054.1 UniProtKB/TrEMBL
  ENSSSCT00005029391.1 UniProtKB/TrEMBL
  ENSSSCT00005029430.1 UniProtKB/TrEMBL
  ENSSSCT00005029465.1 UniProtKB/TrEMBL
  ENSSSCT00015006838.1 UniProtKB/TrEMBL
  ENSSSCT00015006848.1 UniProtKB/TrEMBL
  ENSSSCT00015006853.1 UniProtKB/TrEMBL
  ENSSSCT00025002828.1 UniProtKB/TrEMBL
  ENSSSCT00025002843.1 UniProtKB/TrEMBL
  ENSSSCT00025002860.1 UniProtKB/TrEMBL
  ENSSSCT00030023960.1 UniProtKB/TrEMBL
  ENSSSCT00030023970.1 UniProtKB/TrEMBL
  ENSSSCT00030023980.1 UniProtKB/TrEMBL
  ENSSSCT00035049403.1 UniProtKB/TrEMBL
  ENSSSCT00035049411.1 UniProtKB/TrEMBL
  ENSSSCT00035049417.1 UniProtKB/TrEMBL
  ENSSSCT00040096812.1 UniProtKB/TrEMBL
  ENSSSCT00040096896.1 UniProtKB/TrEMBL
  ENSSSCT00040096949.1 UniProtKB/TrEMBL
  ENSSSCT00045019819.1 UniProtKB/TrEMBL
  ENSSSCT00045019839.1 UniProtKB/TrEMBL
  ENSSSCT00045019866.1 UniProtKB/TrEMBL
  ENSSSCT00050074133.1 UniProtKB/TrEMBL
  ENSSSCT00050074138.1 UniProtKB/TrEMBL
  ENSSSCT00050074144.1 UniProtKB/TrEMBL
  ENSSSCT00055002223.1 UniProtKB/TrEMBL
  ENSSSCT00055002244.1 UniProtKB/TrEMBL
  ENSSSCT00055002264.1 UniProtKB/TrEMBL
  ENSSSCT00060029502.1 UniProtKB/TrEMBL
  ENSSSCT00060029518.1 UniProtKB/TrEMBL
  ENSSSCT00060029528.1 UniProtKB/TrEMBL
  ENSSSCT00065026815.1 UniProtKB/TrEMBL
  ENSSSCT00065026825.1 UniProtKB/TrEMBL
  ENSSSCT00065026831.1 UniProtKB/TrEMBL
  ENSSSCT00070037685.1 UniProtKB/TrEMBL
  ENSSSCT00070037698.1 UniProtKB/TrEMBL
InterPro TMEM85/Emc4 UniProtKB/TrEMBL
KEGG Report ssc:100153736 UniProtKB/TrEMBL
NCBI Gene EMC4 ENTREZGENE
PANTHER ER MEMBRANE PROTEIN COMPLEX SUBUNIT 4 UniProtKB/TrEMBL
  PTHR19315 UniProtKB/TrEMBL
Pfam DUF1077 UniProtKB/TrEMBL
PIRSF UCP017207_TM-p85 UniProtKB/TrEMBL
UniProt A0A286ZIA2 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UNA4 ENTREZGENE
  A0A4X1US23_PIG UniProtKB/TrEMBL
  A0A8D0QG68_PIG UniProtKB/TrEMBL
  A0A8D1FU71_PIG UniProtKB/TrEMBL
  A0A8D1N2I3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1TJ84_PIG UniProtKB/TrEMBL
  A0A8D1XWW6_PIG UniProtKB/TrEMBL
UniProt Secondary A0A4X1UNA4 UniProtKB/TrEMBL
  A0A5G2R546 UniProtKB/TrEMBL
VGNC ID VGNC:103941 ENTREZGENE