SHISA2 (shisa family member 2) - Rat Genome Database

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Gene: SHISA2 (shisa family member 2) Sus scrofa
Analyze
Symbol: SHISA2
Name: shisa family member 2
RGD ID: 13919656
Description: INVOLVED IN negative regulation of fibroblast growth factor receptor signaling pathway (ortholog); negative regulation of Wnt signaling pathway (ortholog); FOUND IN endoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein shisa-2 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl113,806,302 - 3,812,170 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1113,806,297 - 3,812,170 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2113,039,207 - 3,044,963 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SHISA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl113,806,302 - 3,812,170 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1113,806,297 - 3,812,170 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2113,039,207 - 3,044,963 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SHISA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381326,044,597 - 26,052,016 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1326,044,597 - 26,052,016 (-)EnsemblGRCh38hg38GRCh38
GRCh371326,618,735 - 26,626,154 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361325,516,735 - 25,523,198 (-)NCBINCBI36Build 36hg18NCBI36
Celera137,686,949 - 7,693,412 (-)NCBICelera
Cytogenetic Map13q12.13NCBI
HuRef137,436,767 - 7,443,244 (-)NCBIHuRef
CHM1_11326,586,869 - 26,593,340 (-)NCBICHM1_1
T2T-CHM13v2.01325,258,479 - 25,265,905 (-)NCBIT2T-CHM13v2.0
Shisa2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391459,862,730 - 59,869,109 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1459,862,757 - 59,869,109 (+)EnsemblGRCm39 Ensembl
GRCm381459,625,281 - 59,631,660 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1459,625,308 - 59,631,660 (+)EnsemblGRCm38mm10GRCm38
MGSCv371460,244,118 - 60,250,497 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361458,579,418 - 58,585,765 (+)NCBIMGSCv36mm8
Celera1457,427,718 - 57,434,097 (+)NCBICelera
Cytogenetic Map14C3NCBI
cM Map1431.49NCBI
Shisa2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81537,982,913 - 37,987,211 (+)NCBIGRCr8
mRatBN7.21533,806,715 - 33,811,013 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1533,805,958 - 33,811,013 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1535,666,380 - 35,670,677 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01536,817,057 - 36,821,354 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01535,267,861 - 35,272,159 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01539,945,095 - 39,949,393 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1539,945,095 - 39,949,393 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01543,763,011 - 43,767,309 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41538,740,511 - 38,744,809 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1533,515,522 - 33,519,820 (+)NCBICelera
Cytogenetic Map15p12NCBI
Shisa2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554975,433,050 - 5,459,680 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554975,453,682 - 5,459,680 (-)NCBIChiLan1.0ChiLan1.0
SHISA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21425,644,213 - 25,650,807 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11316,752,327 - 16,758,929 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0137,337,763 - 7,345,166 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11325,687,174 - 25,693,594 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1325,687,174 - 25,693,594 (-)Ensemblpanpan1.1panPan2
SHISA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha2513,542,704 - 13,549,314 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02513,608,738 - 13,614,776 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2513,608,738 - 13,614,062 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12513,491,729 - 13,497,758 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02513,487,731 - 13,493,761 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02513,535,502 - 13,541,553 (+)NCBIUU_Cfam_GSD_1.0
Shisa2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945115,666,071 - 115,672,773 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936688278,789 - 285,153 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936688278,789 - 285,129 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SHISA2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.135,391,982 - 5,397,028 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl35,392,461 - 5,396,931 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605739,029,376 - 39,035,890 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Shisa2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477612,461,903 - 12,468,508 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477612,462,553 - 12,469,593 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SHISA2
208 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2
Low 7 2 3 3 11 2 1 1
Below cutoff 2 2 2 8 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000028975   ⟹   ENSSSCP00000025617
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl113,806,302 - 3,812,170 (-)Ensembl
RefSeq Acc Id: XM_003482858   ⟹   XP_003482906
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1113,806,297 - 3,812,170 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_003482906   ⟸   XM_003482858
- UniProtKB: F1RTL1 (UniProtKB/TrEMBL),   A0A8D0ZEY1 (UniProtKB/TrEMBL),   A0A8D1K9A1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000025617   ⟸   ENSSSCT00000028975


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000030113 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015003162 UniProtKB/TrEMBL
  ENSSSCG00025035204 UniProtKB/TrEMBL
  ENSSSCG00030039905 UniProtKB/TrEMBL
  ENSSSCG00035029787 UniProtKB/TrEMBL
  ENSSSCG00040032938 UniProtKB/TrEMBL
  ENSSSCG00045012024 UniProtKB/TrEMBL
  ENSSSCG00050025598 UniProtKB/TrEMBL
  ENSSSCG00055013398 UniProtKB/TrEMBL
  ENSSSCG00060050586 UniProtKB/TrEMBL
  ENSSSCG00065059881 UniProtKB/TrEMBL
  ENSSSCG00070012715 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000028975 ENTREZGENE
  ENSSSCT00000028975.4 UniProtKB/TrEMBL
  ENSSSCT00015004005.1 UniProtKB/TrEMBL
  ENSSSCT00025048007.1 UniProtKB/TrEMBL
  ENSSSCT00030055524.1 UniProtKB/TrEMBL
  ENSSSCT00035039461.1 UniProtKB/TrEMBL
  ENSSSCT00040044370.1 UniProtKB/TrEMBL
  ENSSSCT00045020407.1 UniProtKB/TrEMBL
  ENSSSCT00050034475.1 UniProtKB/TrEMBL
  ENSSSCT00055026429.1 UniProtKB/TrEMBL
  ENSSSCT00060068783.1 UniProtKB/TrEMBL
  ENSSSCT00065082011.1 UniProtKB/TrEMBL
  ENSSSCT00070024795.1 UniProtKB/TrEMBL
InterPro Shisa UniProtKB/TrEMBL
KEGG Report ssc:100739731 UniProtKB/TrEMBL
NCBI Gene SHISA2 ENTREZGENE
PANTHER PROTEIN SHISA-2 HOMOLOG UniProtKB/TrEMBL
  PTHR31395 UniProtKB/TrEMBL
Pfam Shisa UniProtKB/TrEMBL
UniProt A0A4X1TYH4_PIG UniProtKB/TrEMBL
  A0A8D0ZEY1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1K9A1 ENTREZGENE, UniProtKB/TrEMBL
  F1RTL1 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:92845 ENTREZGENE