ATP5IF1 (ATP synthase inhibitory factor subunit 1) - Rat Genome Database

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Gene: ATP5IF1 (ATP synthase inhibitory factor subunit 1) Sus scrofa
Analyze
Symbol: ATP5IF1
Name: ATP synthase inhibitory factor subunit 1
RGD ID: 13903400
Description: ENCODES a protein that exhibits angiostatin binding (ortholog); ATPase binding (ortholog); ATPase inhibitor activity (ortholog); INVOLVED IN erythrocyte differentiation (ortholog); heme biosynthetic process (ortholog); mitochondrial depolarization (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); Experimental Mammary Neoplasms (ortholog); FOUND IN cell surface (ortholog); mitochondrion (ortholog); protein-containing complex (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ATP synthase F1 subunit epsilon; ATPase inhibitor, mitochondrial; ATPase inhibitory factor 1; ATPIF1; IF(1); IF1; inhibitor of F(1)F(o)-ATPase; mitochondrial ATPIF1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl685,307,189 - 85,309,215 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1685,307,242 - 85,309,211 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2679,045,827 - 79,047,796 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074  


Genomics

Comparative Map Data
ATP5IF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl685,307,189 - 85,309,215 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1685,307,242 - 85,309,211 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2679,045,827 - 79,047,796 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATP5IF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38128,236,124 - 28,238,100 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl128,236,109 - 28,246,906 (+)EnsemblGRCh38hg38GRCh38
GRCh37128,562,635 - 28,564,611 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36128,435,198 - 28,437,198 (+)NCBINCBI36Build 36hg18NCBI36
Build 34128,246,752 - 28,248,751NCBI
Celera126,958,253 - 26,960,253 (+)NCBICelera
Cytogenetic Map1p35.3NCBI
HuRef126,819,368 - 26,821,382 (+)NCBIHuRef
CHM1_1128,678,108 - 28,680,122 (+)NCBICHM1_1
T2T-CHM13v2.0128,077,959 - 28,079,935 (+)NCBIT2T-CHM13v2.0
Atp5if1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394132,257,870 - 132,262,746 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4132,257,866 - 132,260,970 (-)EnsemblGRCm39 Ensembl
GRCm384132,530,555 - 132,535,450 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4132,530,555 - 132,533,659 (-)EnsemblGRCm38mm10GRCm38
MGSCv374132,086,470 - 132,089,574 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364131,802,635 - 131,805,721 (-)NCBIMGSCv36mm8
Celera4130,690,732 - 130,693,836 (-)NCBICelera
Cytogenetic Map4D2.3NCBI
cM Map465.51NCBI
Atp5if1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85150,022,960 - 150,026,677 (-)NCBIGRCr8
mRatBN7.25144,738,950 - 144,742,668 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5144,738,950 - 144,742,668 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5147,438,531 - 147,442,246 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05149,208,092 - 149,211,807 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05149,196,912 - 149,200,629 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05150,719,570 - 150,723,287 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5150,719,569 - 150,723,321 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05154,387,824 - 154,391,541 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45152,618,307 - 152,622,024 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15152,628,417 - 152,632,067 (+)NCBI
Celera5143,165,585 - 143,169,339 (-)NCBICelera
Cytogenetic Map5q36NCBI
Atp5if1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554527,373,001 - 7,375,856 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554527,372,917 - 7,375,072 (+)NCBIChiLan1.0ChiLan1.0
ATP5IF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21198,616,521 - 198,618,569 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11197,733,428 - 197,735,476 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0127,495,250 - 27,497,255 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1128,532,091 - 28,534,109 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl128,532,091 - 28,542,607 (+)Ensemblpanpan1.1panPan2
ATP5IF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1272,188,562 - 72,191,344 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl272,188,266 - 72,191,326 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha268,766,422 - 68,769,200 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0272,748,757 - 72,751,535 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl272,748,456 - 72,751,516 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1269,576,066 - 69,578,844 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0270,586,244 - 70,589,023 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0271,582,936 - 71,585,714 (-)NCBIUU_Cfam_GSD_1.0
Atp5if1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505846,571,625 - 46,574,978 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647412,396,023 - 12,401,023 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647412,396,416 - 12,399,760 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP5IF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120104,567,306 - 104,569,346 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603311,910,192 - 11,912,229 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp5if1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476412,068,638 - 12,072,190 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476412,068,518 - 12,070,542 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ATP5IF1
36 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 4 3 5 2 23 2 3 3
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000029874   ⟹   ENSSSCP00000023669
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl685,307,189 - 85,309,215 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000072030   ⟹   ENSSSCP00000071629
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl685,307,189 - 85,321,350 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000087285   ⟹   ENSSSCP00000061461
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl685,307,189 - 85,308,906 (+)Ensembl
RefSeq Acc Id: NM_001097486   ⟹   NP_001090955
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1685,307,242 - 85,309,211 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001090955   ⟸   NM_001097486
- Peptide Label: precursor
- UniProtKB: A1XQV8 (UniProtKB/Swiss-Prot),   Q29307 (UniProtKB/Swiss-Prot),   A0A4X1TR60 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000023669   ⟸   ENSSSCT00000029874
RefSeq Acc Id: ENSSSCP00000071629   ⟸   ENSSSCT00000072030
RefSeq Acc Id: ENSSSCP00000061461   ⟸   ENSSSCT00000087285


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000027072 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00005022913 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00015071631 UniProtKB/Swiss-Prot
  ENSSSCG00025027404 UniProtKB/Swiss-Prot
  ENSSSCG00030045646 UniProtKB/Swiss-Prot
  ENSSSCG00035074291 UniProtKB/Swiss-Prot
  ENSSSCG00040067989 UniProtKB/Swiss-Prot
  ENSSSCG00045029732 UniProtKB/Swiss-Prot
  ENSSSCG00050046864 UniProtKB/Swiss-Prot
  ENSSSCG00055003291 UniProtKB/Swiss-Prot
  ENSSSCG00060031333 UniProtKB/Swiss-Prot
  ENSSSCG00065026077 UniProtKB/Swiss-Prot
  ENSSSCG00070010937 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000029874 ENTREZGENE
  ENSSSCT00000029874.3 UniProtKB/Swiss-Prot
  ENSSSCT00000087285.1 UniProtKB/TrEMBL
  ENSSSCT00005036359.1 UniProtKB/Swiss-Prot
  ENSSSCT00005036421.1 UniProtKB/TrEMBL
  ENSSSCT00005036450.1 UniProtKB/TrEMBL
  ENSSSCT00015096369.1 UniProtKB/Swiss-Prot
  ENSSSCT00025037194.1 UniProtKB/Swiss-Prot
  ENSSSCT00030063742.1 UniProtKB/Swiss-Prot
  ENSSSCT00035100867.1 UniProtKB/Swiss-Prot
  ENSSSCT00040093142.1 UniProtKB/Swiss-Prot
  ENSSSCT00045050908.1 UniProtKB/Swiss-Prot
  ENSSSCT00050063813.1 UniProtKB/Swiss-Prot
  ENSSSCT00055006453.1 UniProtKB/Swiss-Prot
  ENSSSCT00060042419.1 UniProtKB/Swiss-Prot
  ENSSSCT00065035016.1 UniProtKB/Swiss-Prot
  ENSSSCT00070021504.1 UniProtKB/TrEMBL
Gene3D-CATH Single helix bin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ATPase_inhibitor_mt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:100038002 UniProtKB/Swiss-Prot
NCBI Gene ATP5IF1 ENTREZGENE
PANTHER FI01416P UniProtKB/Swiss-Prot
  FI01416P UniProtKB/Swiss-Prot
  FI01416P UniProtKB/TrEMBL
  FI01416P UniProtKB/TrEMBL
Pfam IATP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP F1 ATPase inhibitor, IF1, C-terminal domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A4X1TNS6_PIG UniProtKB/TrEMBL
  A0A4X1TQT3_PIG UniProtKB/TrEMBL
  A0A4X1TR60 ENTREZGENE, UniProtKB/TrEMBL
  A1XQV8 ENTREZGENE
  ATIF1_PIG UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary A0A5G2QD01 UniProtKB/TrEMBL
  A1XQV8 UniProtKB/Swiss-Prot
VGNC ID VGNC:85656 ENTREZGENE