MAD2L1BP (MAD2L1 binding protein) - Rat Genome Database

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Gene: MAD2L1BP (MAD2L1 binding protein) Sus scrofa
Analyze
Symbol: MAD2L1BP
Name: MAD2L1 binding protein
RGD ID: 13896639
Description: INVOLVED IN deactivation of mitotic spindle assembly checkpoint (inferred); regulation of exit from mitosis (inferred); ASSOCIATED WITH genetic disease (ortholog); infantile Refsum disease (ortholog); Zellweger syndrome (ortholog); FOUND IN cytoplasm (inferred); nuclear membrane (inferred); nucleolus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: MAD2L1-binding protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl738,613,440 - 38,623,832 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1738,613,349 - 38,623,845 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2744,195,882 - 44,206,358 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
MAD2L1BP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl738,613,440 - 38,623,832 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1738,613,349 - 38,623,845 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2744,195,882 - 44,206,358 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MAD2L1BP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38643,629,540 - 43,640,941 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl643,629,540 - 43,640,941 (+)EnsemblGRCh38hg38GRCh38
GRCh37643,597,277 - 43,608,678 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36643,705,257 - 43,716,667 (+)NCBINCBI36Build 36hg18NCBI36
Build 34643,711,554 - 43,716,664NCBI
Celera645,148,900 - 45,160,310 (+)NCBICelera
Cytogenetic Map6p21.1NCBI
HuRef643,316,454 - 43,327,864 (+)NCBIHuRef
CHM1_1643,600,342 - 43,611,752 (+)NCBICHM1_1
T2T-CHM13v2.0643,458,178 - 43,469,674 (+)NCBIT2T-CHM13v2.0
Mad2l1bp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391746,458,311 - 46,464,477 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1746,458,313 - 46,464,479 (-)EnsemblGRCm39 Ensembl
GRCm381746,147,385 - 46,153,551 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1746,147,387 - 46,153,553 (-)EnsemblGRCm38mm10GRCm38
MGSCv371746,284,334 - 46,290,500 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361745,610,970 - 45,617,117 (-)NCBIMGSCv36mm8
Celera1749,578,789 - 49,584,951 (-)NCBICelera
Cytogenetic Map17CNCBI
cM Map1722.88NCBI
Mad2l1bp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8922,329,699 - 22,334,024 (+)NCBIGRCr8
mRatBN7.2914,832,133 - 14,836,458 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl914,832,132 - 14,837,447 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx923,416,692 - 23,421,036 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0928,479,122 - 28,483,457 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0926,780,120 - 26,784,464 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0917,217,141 - 17,221,465 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl917,216,495 - 17,221,434 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0916,112,968 - 16,117,292 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4910,396,316 - 10,401,505 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1910,393,637 - 10,398,824 (+)NCBI
Celera912,579,446 - 12,583,626 (+)NCBICelera
Cytogenetic Map9q12NCBI
Mad2l1bp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554379,423,630 - 9,433,357 (+)NCBIChiLan1.0ChiLan1.0
MAD2L1BP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2558,133,961 - 58,139,117 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1654,003,743 - 54,008,898 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0643,219,638 - 43,230,988 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1644,515,529 - 44,520,288 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl644,509,839 - 44,521,590 (+)Ensemblpanpan1.1panPan2
MAD2L1BP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11212,085,825 - 12,089,907 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1212,085,915 - 12,090,411 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1212,112,275 - 12,117,289 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01212,569,776 - 12,574,790 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1212,569,868 - 12,574,332 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11212,094,863 - 12,099,876 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01212,181,890 - 12,186,897 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01212,275,386 - 12,280,401 (+)NCBIUU_Cfam_GSD_1.0
Mad2l1bp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494647,574,303 - 47,580,270 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647616,380,356 - 16,385,479 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647616,379,932 - 16,385,812 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MAD2L1BP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11728,524,122 - 28,529,162 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1728,524,117 - 28,529,139 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604443,688,591 - 43,693,762 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mad2l1bp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475416,045,331 - 16,047,497 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475416,044,275 - 16,047,500 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in MAD2L1BP
117 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 10 3 3 5 2 23 2 3 3
Below cutoff 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000063459   ⟹   ENSSSCP00000045959
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl738,613,440 - 38,623,832 (+)Ensembl
RefSeq Acc Id: XM_001929515   ⟹   XP_001929550
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1738,613,349 - 38,623,845 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013977970   ⟹   XP_013833424
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1738,613,508 - 38,623,845 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_001929550   ⟸   XM_001929515
- UniProtKB: F1SIT2 (UniProtKB/TrEMBL),   A0A8D0K1L2 (UniProtKB/TrEMBL),   A0A4X1V3K9 (UniProtKB/TrEMBL),   A0A8D1E2R1 (UniProtKB/TrEMBL),   A0A8D1E2Q1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013833424   ⟸   XM_013977970
- UniProtKB: F1SIT2 (UniProtKB/TrEMBL),   A0A8D0K1L2 (UniProtKB/TrEMBL),   A0A4X1V3K9 (UniProtKB/TrEMBL),   A0A8D1E2R1 (UniProtKB/TrEMBL),   A0A8D1E2Q1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000045959   ⟸   ENSSSCT00000063459


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000016346 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005033535 UniProtKB/TrEMBL
  ENSSSCG00015019438 UniProtKB/TrEMBL
  ENSSSCG00025033038 UniProtKB/TrEMBL
  ENSSSCG00030057463 UniProtKB/TrEMBL
  ENSSSCG00035073364 UniProtKB/TrEMBL
  ENSSSCG00040026583 UniProtKB/TrEMBL
  ENSSSCG00045027210 UniProtKB/TrEMBL
  ENSSSCG00050002760 UniProtKB/TrEMBL
  ENSSSCG00055024639 UniProtKB/TrEMBL
  ENSSSCG00060029511 UniProtKB/TrEMBL
  ENSSSCG00065075042 UniProtKB/TrEMBL
  ENSSSCG00070022275 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000063459 ENTREZGENE
  ENSSSCT00000063459.3 UniProtKB/TrEMBL
  ENSSSCT00005053523.1 UniProtKB/TrEMBL
  ENSSSCT00005053560.1 UniProtKB/TrEMBL
  ENSSSCT00015025681.1 UniProtKB/TrEMBL
  ENSSSCT00025044926.1 UniProtKB/TrEMBL
  ENSSSCT00030080125.1 UniProtKB/TrEMBL
  ENSSSCT00035099367.1 UniProtKB/TrEMBL
  ENSSSCT00040035546.1 UniProtKB/TrEMBL
  ENSSSCT00040035588.1 UniProtKB/TrEMBL
  ENSSSCT00045046261.1 UniProtKB/TrEMBL
  ENSSSCT00050003509.1 UniProtKB/TrEMBL
  ENSSSCT00055048519.1 UniProtKB/TrEMBL
  ENSSSCT00055048583.1 UniProtKB/TrEMBL
  ENSSSCT00060039861.1 UniProtKB/TrEMBL
  ENSSSCT00065103456.1 UniProtKB/TrEMBL
  ENSSSCT00070044264.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.900.20 UniProtKB/TrEMBL
InterPro MAD1/Cdc20-bound-Mad2-bd UniProtKB/TrEMBL
KEGG Report ssc:100155954 UniProtKB/TrEMBL
NCBI Gene MAD2L1BP ENTREZGENE
PANTHER MAD2L1-BINDING PROTEIN UniProtKB/TrEMBL
  PTHR15681 UniProtKB/TrEMBL
Pfam p31comet UniProtKB/TrEMBL
UniProt A0A4X1V3K9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0K1L2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1E2Q1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1E2R1 ENTREZGENE
  F1SIT2 ENTREZGENE
UniProt Secondary A0A8D1E2R1 UniProtKB/TrEMBL
  F1SIT2 UniProtKB/TrEMBL
VGNC ID VGNC:89940 ENTREZGENE