CRY1 (cryptochrome circadian regulator 1) - Rat Genome Database

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Gene: CRY1 (cryptochrome circadian regulator 1) Sus scrofa
Analyze
Symbol: CRY1
Name: cryptochrome circadian regulator 1
RGD ID: 13893425
Description: ENCODES a protein that exhibits deoxyribodipyrimidine photo-lyase activity (ortholog); DNA (6-4) photolyase activity (ortholog); INVOLVED IN circadian rhythm (ortholog); ASSOCIATED WITH advanced sleep phase syndrome (ortholog); alcohol withdrawal syndrome (ortholog); attention deficit hyperactivity disorder (ortholog); FOUND IN cytoplasm (inferred); mitochondrion (inferred); nucleus (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cryptochrome 1 (photolyase-like); cryptochrome circadian clock 1; cryptochrome-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl513,275,545 - 13,364,593 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1513,275,265 - 13,429,566 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2513,128,680 - 13,217,202 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,IEA)
mitochondrion  (IEA)
nucleus  (IBA,IEA)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CRY1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl513,275,545 - 13,364,593 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1513,275,265 - 13,429,566 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2513,128,680 - 13,217,202 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CRY1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812106,991,364 - 107,093,549 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12106,991,364 - 107,093,549 (-)EnsemblGRCh38hg38GRCh38
GRCh3712107,385,142 - 107,487,327 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612105,909,272 - 106,011,455 (-)NCBINCBI36Build 36hg18NCBI36
Build 3412105,887,608 - 105,989,792NCBI
Celera12107,050,701 - 107,153,165 (-)NCBICelera
Cytogenetic Map12q23.3NCBI
HuRef12104,445,641 - 104,548,152 (-)NCBIHuRef
CHM1_112107,350,774 - 107,453,198 (-)NCBICHM1_1
T2T-CHM13v2.012106,954,997 - 107,057,182 (-)NCBIT2T-CHM13v2.0
Cry1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391084,967,564 - 85,020,918 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1084,967,564 - 85,020,928 (-)EnsemblGRCm39 Ensembl
GRCm381085,131,700 - 85,185,054 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1085,131,700 - 85,185,064 (-)EnsemblGRCm38mm10GRCm38
MGSCv371084,594,445 - 84,647,799 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361084,561,499 - 84,614,853 (-)NCBIMGSCv36mm8
Celera1087,108,048 - 87,162,027 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1041.63NCBI
Cry1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8720,417,526 - 20,481,791 (+)NCBIGRCr8
mRatBN7.2718,529,823 - 18,594,092 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl718,529,823 - 18,594,091 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx720,497,139 - 20,554,961 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0722,659,833 - 22,717,659 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0722,436,800 - 22,494,621 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0724,534,593 - 24,634,098 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl724,534,615 - 24,634,097 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0726,277,264 - 26,278,124 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0724,684,038 - 24,784,329 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4720,643,879 - 20,709,216 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1720,664,607 - 20,729,486 (+)NCBI
Celera715,758,113 - 15,822,171 (+)NCBICelera
Cytogenetic Map7q13NCBI
Cry1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540540,874,322 - 40,941,664 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540540,878,227 - 40,941,664 (-)NCBIChiLan1.0ChiLan1.0
CRY1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210115,047,336 - 115,151,695 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112115,043,733 - 115,148,095 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012104,558,874 - 104,658,833 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112107,952,836 - 108,052,484 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12107,954,262 - 108,052,484 (-)Ensemblpanpan1.1panPan2
CRY1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11031,681,098 - 31,792,995 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1031,681,288 - 31,780,306 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1031,665,919 - 31,778,539 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01032,522,572 - 32,634,406 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1032,522,596 - 32,623,626 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11032,259,347 - 32,370,641 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01032,549,505 - 32,661,061 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01032,735,159 - 32,847,092 (+)NCBIUU_Cfam_GSD_1.0
Cry1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494514,918,737 - 14,984,383 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364927,929,138 - 7,995,579 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364927,929,138 - 7,994,797 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CRY1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111102,200,822 - 102,306,165 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11102,204,224 - 102,306,182 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037142,748,733 - 142,851,088 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cry1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247502,465,999 - 2,529,251 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CRY1
4429 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 1 3
Low 10 4 2 4 2 20 2 3 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000064675   ⟹   ENSSSCP00000032753
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl513,275,545 - 13,364,593 (+)Ensembl
RefSeq Acc Id: XM_003126079   ⟹   XP_003126127
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1513,275,265 - 13,364,597 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013988220   ⟹   XP_013843674
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1513,275,300 - 13,364,597 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021091557   ⟹   XP_020947216
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1513,275,546 - 13,380,863 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021091558   ⟹   XP_020947217
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1513,275,549 - 13,380,863 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021091559   ⟹   XP_020947218
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1513,275,549 - 13,380,863 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021091560   ⟹   XP_020947219
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1513,275,549 - 13,380,863 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021091562   ⟹   XP_020947221
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1513,275,549 - 13,429,566 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021091563   ⟹   XP_020947222
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1513,275,549 - 13,376,641 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021091564   ⟹   XP_020947223
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1513,275,549 - 13,380,863 (+)NCBI
Sequence:
RefSeq Acc Id: XP_003126127   ⟸   XM_003126079
- UniProtKB: A0A286ZMF9 (UniProtKB/TrEMBL),   A0A4X1SJC5 (UniProtKB/TrEMBL),   A0A480LD13 (UniProtKB/TrEMBL),   A0A4X1SK22 (UniProtKB/TrEMBL),   A0A8D0I4U3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013843674   ⟸   XM_013988220
- UniProtKB: A0A286ZMF9 (UniProtKB/TrEMBL),   A0A4X1SJC5 (UniProtKB/TrEMBL),   A0A480LD13 (UniProtKB/TrEMBL),   A0A4X1SK22 (UniProtKB/TrEMBL),   A0A8D0I4U3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020947216   ⟸   XM_021091557
- UniProtKB: A0A286ZMF9 (UniProtKB/TrEMBL),   A0A4X1SJC5 (UniProtKB/TrEMBL),   A0A480LD13 (UniProtKB/TrEMBL),   A0A4X1SK22 (UniProtKB/TrEMBL),   A0A8D0I4U3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020947221   ⟸   XM_021091562
- UniProtKB: A0A286ZMF9 (UniProtKB/TrEMBL),   A0A4X1SJC5 (UniProtKB/TrEMBL),   A0A480LD13 (UniProtKB/TrEMBL),   A0A4X1SK22 (UniProtKB/TrEMBL),   A0A8D0I4U3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020947218   ⟸   XM_021091559
- UniProtKB: A0A286ZMF9 (UniProtKB/TrEMBL),   A0A4X1SJC5 (UniProtKB/TrEMBL),   A0A480LD13 (UniProtKB/TrEMBL),   A0A4X1SK22 (UniProtKB/TrEMBL),   A0A8D0I4U3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020947219   ⟸   XM_021091560
- UniProtKB: A0A286ZMF9 (UniProtKB/TrEMBL),   A0A4X1SJC5 (UniProtKB/TrEMBL),   A0A480LD13 (UniProtKB/TrEMBL),   A0A4X1SK22 (UniProtKB/TrEMBL),   A0A8D0I4U3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020947223   ⟸   XM_021091564
- UniProtKB: A0A286ZMF9 (UniProtKB/TrEMBL),   A0A4X1SJC5 (UniProtKB/TrEMBL),   A0A480LD13 (UniProtKB/TrEMBL),   A0A4X1SK22 (UniProtKB/TrEMBL),   A0A8D0I4U3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020947217   ⟸   XM_021091558
- UniProtKB: A0A286ZMF9 (UniProtKB/TrEMBL),   A0A4X1SJC5 (UniProtKB/TrEMBL),   A0A480LD13 (UniProtKB/TrEMBL),   A0A4X1SK22 (UniProtKB/TrEMBL),   A0A8D0I4U3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020947222   ⟸   XM_021091563
- UniProtKB: A0A286ZMF9 (UniProtKB/TrEMBL),   A0A4X1SJC5 (UniProtKB/TrEMBL),   A0A480LD13 (UniProtKB/TrEMBL),   A0A4X1SK22 (UniProtKB/TrEMBL),   A0A8D0I4U3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000032753   ⟸   ENSSSCT00000064675

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000000164 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005008733 UniProtKB/TrEMBL
  ENSSSCG00015054221 UniProtKB/TrEMBL
  ENSSSCG00025022752 UniProtKB/TrEMBL
  ENSSSCG00030023305 UniProtKB/TrEMBL
  ENSSSCG00035074472 UniProtKB/TrEMBL
  ENSSSCG00040048141 UniProtKB/TrEMBL
  ENSSSCG00045011463 UniProtKB/TrEMBL
  ENSSSCG00050045965 UniProtKB/TrEMBL
  ENSSSCG00055016028 UniProtKB/TrEMBL
  ENSSSCG00060017727 UniProtKB/TrEMBL
  ENSSSCG00065051837 UniProtKB/TrEMBL
  ENSSSCG00070001411 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000064675 ENTREZGENE
  ENSSSCT00000064675.3 UniProtKB/TrEMBL
  ENSSSCT00005013421.1 UniProtKB/TrEMBL
  ENSSSCT00015072328.1 UniProtKB/TrEMBL
  ENSSSCT00025030907.1 UniProtKB/TrEMBL
  ENSSSCT00030032386.1 UniProtKB/TrEMBL
  ENSSSCT00035101108.1 UniProtKB/TrEMBL
  ENSSSCT00040065043.1 UniProtKB/TrEMBL
  ENSSSCT00045019446.1 UniProtKB/TrEMBL
  ENSSSCT00050062536.1 UniProtKB/TrEMBL
  ENSSSCT00055031662.1 UniProtKB/TrEMBL
  ENSSSCT00060023772.1 UniProtKB/TrEMBL
  ENSSSCT00065070988.1 UniProtKB/TrEMBL
  ENSSSCT00070002971.1 UniProtKB/TrEMBL
  ENSSSCT00070003226.1 UniProtKB/TrEMBL
  ENSSSCT00070003282.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.80 UniProtKB/TrEMBL
  3.40.50.620 UniProtKB/TrEMBL
  DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 UniProtKB/TrEMBL
InterPro Crypto/Photolyase_FAD-like_sf UniProtKB/TrEMBL
  Crypto/Photolyase_N_sf UniProtKB/TrEMBL
  Cryptochr/Photolyase_FAD-bd UniProtKB/TrEMBL
  Cryptochrome/DNA_photolyase_1 UniProtKB/TrEMBL
  DNA_photolyase_N UniProtKB/TrEMBL
  Rossmann-like_a/b/a_fold UniProtKB/TrEMBL
KEGG Report ssc:100520380 UniProtKB/TrEMBL
NCBI Gene CRY1 ENTREZGENE
PANTHER CRYPTOCHROME-1 UniProtKB/TrEMBL
  PTHR11455 UniProtKB/TrEMBL
Pfam DNA_photolyase UniProtKB/TrEMBL
  FAD_binding_7 UniProtKB/TrEMBL
PROSITE PHR_CRY_ALPHA_BETA UniProtKB/TrEMBL
Superfamily-SCOP SSF48173 UniProtKB/TrEMBL
  SSF52425 UniProtKB/TrEMBL
UniProt A0A286ZMF9 ENTREZGENE
  A0A480LD13 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SJC5 ENTREZGENE
  A0A4X1SJX3_PIG UniProtKB/TrEMBL
  A0A4X1SK22 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0I4U3 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A286ZMF9 UniProtKB/TrEMBL
  A0A4X1SJC5 UniProtKB/TrEMBL
VGNC ID VGNC:87011 ENTREZGENE