TKFC (triokinase and FMN cyclase) - Rat Genome Database

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Gene: TKFC (triokinase and FMN cyclase) Sus scrofa
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Symbol: TKFC
Name: triokinase and FMN cyclase
RGD ID: 13888825
Description: ENCODES a protein that exhibits ATP binding (inferred); FAD-AMP lyase (cyclizing) activity (inferred); glycerone kinase activity (inferred); INVOLVED IN negative regulation of MDA-5 signaling pathway (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); inherited metabolic disorder (ortholog); intellectual disability (ortholog); FOUND IN cytosol (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing); DAK; dihydroxyacetone kinase 2 homolog; triokinase/FMN cyclase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl210,158,188 - 10,171,449 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1210,158,183 - 10,171,452 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.229,705,516 - 9,717,369 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IBA,IEA)

References
Additional References at PubMed
PMID:14681463   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TKFC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl210,158,188 - 10,171,449 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1210,158,183 - 10,171,452 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.229,705,516 - 9,717,369 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TKFC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381161,333,228 - 61,353,426 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1161,333,220 - 61,353,295 (+)EnsemblGRCh38hg38GRCh38
GRCh371161,100,700 - 61,120,898 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361160,857,230 - 60,872,807 (+)NCBINCBI36Build 36hg18NCBI36
Celera1158,436,381 - 58,451,612 (+)NCBICelera
Cytogenetic Map11q12.2NCBI
HuRef1157,428,480 - 57,443,711 (+)NCBIHuRef
CHM1_11160,983,674 - 60,998,905 (+)NCBICHM1_1
T2T-CHM13v2.01161,322,174 - 61,342,034 (+)NCBIT2T-CHM13v2.0
Tkfc
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391910,565,153 - 10,583,257 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1910,565,155 - 10,583,018 (-)EnsemblGRCm39 Ensembl
GRCm381910,592,197 - 10,605,482 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1910,587,791 - 10,605,654 (-)EnsemblGRCm38mm10GRCm38
MGSCv371910,666,687 - 10,678,748 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361910,659,242 - 10,671,303 (-)NCBIMGSCv36mm8
Celera1911,288,172 - 11,300,234 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map196.6NCBI
Tkfc
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81216,664,446 - 216,677,815 (-)NCBIGRCr8
mRatBN7.21207,238,230 - 207,253,035 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1207,236,557 - 207,252,737 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1215,618,124 - 215,631,306 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01222,673,673 - 222,686,863 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01215,368,669 - 215,381,859 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01226,642,901 - 226,657,698 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1226,644,200 - 226,657,408 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01233,588,830 - 233,603,422 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41213,081,825 - 213,095,034 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11213,240,255 - 213,253,464 (-)NCBI
Celera1204,732,902 - 204,746,111 (-)NCBICelera
Cytogenetic Map1q43NCBI
Tkfc
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555116,200,433 - 6,236,283 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555116,200,433 - 6,235,855 (-)NCBIChiLan1.0ChiLan1.0
TKFC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2962,501,040 - 62,520,960 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11163,544,782 - 63,564,297 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01156,633,046 - 56,648,276 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11159,997,775 - 60,017,666 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1160,002,530 - 60,010,762 (+)Ensemblpanpan1.1panPan2
TKFC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11855,051,068 - 55,064,571 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1855,051,097 - 55,064,526 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1853,623,820 - 53,637,316 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01856,098,586 - 56,112,568 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1856,098,590 - 56,112,547 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11855,157,110 - 55,170,596 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01854,778,939 - 54,792,440 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01855,659,103 - 55,673,085 (-)NCBIUU_Cfam_GSD_1.0
Tkfc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494711,584,139 - 11,596,607 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365811,697,947 - 1,710,738 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365811,697,965 - 1,710,363 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TKFC
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1112,495,058 - 12,508,693 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl112,495,477 - 12,507,927 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038109,872,445 - 109,887,877 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tkfc
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624926862,339 - 869,926 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624926862,339 - 870,936 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TKFC
571 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 4 1 4 2 1 1
Low 6 3 3 1 2 23 2 2
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000014305   ⟹   ENSSSCP00000013919
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl210,158,189 - 10,171,449 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000040177   ⟹   ENSSSCP00000042088
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl210,158,189 - 10,171,389 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000041826   ⟹   ENSSSCP00000034559
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl210,158,188 - 10,165,068 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000102978   ⟹   ENSSSCP00000081251
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl210,158,190 - 10,165,676 (-)Ensembl
RefSeq Acc Id: XM_003122641   ⟹   XP_003122689
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1210,158,183 - 10,170,124 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082941   ⟹   XP_020938600
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1210,158,183 - 10,171,452 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020938600   ⟸   XM_021082941
- UniProtKB: A0A2C9F397 (UniProtKB/TrEMBL),   A0A480IXS3 (UniProtKB/TrEMBL),   A0A480HRC0 (UniProtKB/TrEMBL),   A0A480YP74 (UniProtKB/TrEMBL),   A0A8D0TXM2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003122689   ⟸   XM_003122641
- UniProtKB: A0A2C9F397 (UniProtKB/TrEMBL),   A0A480IXS3 (UniProtKB/TrEMBL),   A0A480HRC0 (UniProtKB/TrEMBL),   A0A480YP74 (UniProtKB/TrEMBL),   A0A8D0TXM2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000042088   ⟸   ENSSSCT00000040177
RefSeq Acc Id: ENSSSCP00000034559   ⟸   ENSSSCT00000041826
RefSeq Acc Id: ENSSSCP00000013919   ⟸   ENSSSCT00000014305
RefSeq Acc Id: ENSSSCP00000081251   ⟸   ENSSSCT00000102978
Protein Domains
DhaK   DhaL


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000013087 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015018352 UniProtKB/TrEMBL
  ENSSSCG00035056080 UniProtKB/TrEMBL
  ENSSSCG00070025318 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000014305 ENTREZGENE
  ENSSSCT00000014305.5 UniProtKB/TrEMBL
  ENSSSCT00000040177.3 UniProtKB/TrEMBL
  ENSSSCT00000041826.3 UniProtKB/TrEMBL
  ENSSSCT00000102978 ENTREZGENE
  ENSSSCT00000102978.1 UniProtKB/TrEMBL
  ENSSSCT00015024310.1 UniProtKB/TrEMBL
  ENSSSCT00035074973.1 UniProtKB/TrEMBL
  ENSSSCT00070050617.1 UniProtKB/TrEMBL
  ENSSSCT00070050619.1 UniProtKB/TrEMBL
  ENSSSCT00070050620.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.340 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro DhaK_ATP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DhaK_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DhaL_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DhaL_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:100520121 UniProtKB/TrEMBL
NCBI Gene TKFC ENTREZGENE
PANTHER TRIOKINASE/FMN CYCLASE UniProtKB/Swiss-Prot
  TRIOKINASE/FMN CYCLASE UniProtKB/Swiss-Prot
  TRIOKINASE/FMN CYCLASE UniProtKB/TrEMBL
  TRIOKINASE/FMN CYCLASE UniProtKB/TrEMBL
Pfam Dak1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Dak2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE DHAK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DHAL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART Dak2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP DAK1/DegV-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF101473 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A286ZSK9_PIG UniProtKB/TrEMBL
  A0A287AE46_PIG UniProtKB/TrEMBL
  A0A2C9F397 ENTREZGENE
  A0A480HRC0 ENTREZGENE, UniProtKB/TrEMBL
  A0A480IXS3 ENTREZGENE, UniProtKB/TrEMBL
  A0A480YP74 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VLB8_PIG UniProtKB/TrEMBL
  A0A4X1VLU0_PIG UniProtKB/TrEMBL
  A0A4X1VMV0_PIG UniProtKB/TrEMBL
  A0A8D0TXM2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FRI0_PIG UniProtKB/TrEMBL
  F1RKQ4 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A0A2C9F397 UniProtKB/TrEMBL
  Q9TR81 UniProtKB/Swiss-Prot
VGNC ID VGNC:100872 ENTREZGENE