URAD (ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase) - Rat Genome Database

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Gene: URAD (ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase) Sus scrofa
Analyze
Symbol: URAD
Name: ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase
RGD ID: 13868900
Description: ENCODES a protein that exhibits 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase activity (inferred); carboxy-lyase activity (inferred); INVOLVED IN adenosine catabolic process (inferred); allantoin metabolic process (inferred); amide catabolic process (inferred); FOUND IN peroxisome (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: putative 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1115,353,524 - 5,363,481 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2115,096,514 - 5,106,242 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
peroxisome  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
URAD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1115,353,524 - 5,363,481 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2115,096,514 - 5,106,242 (+)NCBISscrofa10.2Sscrofa10.2susScr3
URAD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381327,977,717 - 27,988,693 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1327,977,717 - 27,988,693 (-)EnsemblGRCh38hg38GRCh38
GRCh371328,551,854 - 28,562,830 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361327,450,243 - 27,460,774 (-)NCBINCBI36Build 36hg18NCBI36
Celera139,627,284 - 9,637,823 (-)NCBICelera
Cytogenetic Map13q12.2NCBI
HuRef139,372,921 - 9,383,423 (-)NCBIHuRef
CHM1_11328,520,709 - 28,531,241 (-)NCBICHM1_1
T2T-CHM13v2.01327,199,102 - 27,210,083 (-)NCBIT2T-CHM13v2.0
Urad
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395147,251,794 - 147,259,250 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5147,251,794 - 147,259,250 (-)EnsemblGRCm39 Ensembl
GRCm385147,314,984 - 147,322,440 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5147,314,984 - 147,322,440 (-)EnsemblGRCm38mm10GRCm38
MGSCv375148,126,560 - 148,134,016 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365147,625,165 - 147,636,683 (-)NCBIMGSCv36mm8
Celera5145,306,316 - 145,313,792 (-)NCBICelera
Cytogenetic Map5G3NCBI
cM Map586.87NCBI
Urad
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81212,745,388 - 12,755,034 (+)NCBIGRCr8
mRatBN7.2127,709,278 - 7,718,925 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl127,709,312 - 7,718,923 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx128,394,421 - 8,403,829 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0129,017,578 - 9,026,984 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0128,045,588 - 8,054,994 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0129,446,808 - 9,456,777 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl129,446,940 - 9,455,673 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01211,562,153 - 11,571,615 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera129,447,491 - 9,457,737 (+)NCBICelera
Cytogenetic Map12p11NCBI
URAD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21427,565,567 - 27,577,051 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11318,670,222 - 18,681,698 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0139,259,104 - 9,270,066 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
URAD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12511,682,304 - 11,693,143 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2511,581,206 - 11,692,284 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2511,745,604 - 11,756,396 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02511,811,279 - 11,822,095 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12511,705,882 - 11,716,673 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02511,698,288 - 11,709,123 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02511,742,263 - 11,753,054 (+)NCBIUU_Cfam_GSD_1.0
Urad
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945172,790,827 - 172,800,858 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493647223,151,674 - 23,161,292 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
URAD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.137,092,926 - 7,109,949 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605737,281,520 - 37,293,239 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Urad
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477610,533,806 - 10,543,091 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477610,533,806 - 10,543,091 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in URAD
379 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_003357809   ⟹   XP_003357857
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1115,353,524 - 5,363,481 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013980412   ⟹   XP_013835866
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1115,353,524 - 5,363,354 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003357857 (Get FASTA)   NCBI Sequence Viewer  
  XP_013835866 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000009940
  ENSSSCP00000009940.3
  ENSSSCP00025030605.1
  ENSSSCP00045020949.1
  ENSSSCP00060041665.1
Reference Protein Sequences
RefSeq Acc Id: XP_003357857   ⟸   XM_003357809
- UniProtKB: A0A8D1HKT1 (UniProtKB/TrEMBL),   F1RSV0 (UniProtKB/TrEMBL),   A0A8D2BSR3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013835866   ⟸   XM_013980412
- UniProtKB: A0A8D1HKT1 (UniProtKB/TrEMBL),   F1RSV0 (UniProtKB/TrEMBL),   A0A8D2BSR3 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000009316 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025051802 UniProtKB/TrEMBL
  ENSSSCG00045017765 UniProtKB/TrEMBL
  ENSSSCG00060070565 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000010206 ENTREZGENE
  ENSSSCT00000010206.5 UniProtKB/TrEMBL
  ENSSSCT00025070810.1 UniProtKB/TrEMBL
  ENSSSCT00045030234.1 UniProtKB/TrEMBL
  ENSSSCT00060096294.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.3330.10 UniProtKB/TrEMBL
InterPro OHCU_decarboxylase UniProtKB/TrEMBL
  OHCU_decarboxylase-1 UniProtKB/TrEMBL
  OHCU_decarboxylase_sf UniProtKB/TrEMBL
KEGG Report ssc:100515273 UniProtKB/TrEMBL
NCBI Gene URAD ENTREZGENE
PANTHER 2-OXO-4-HYDROXY-4-CARBOXY-5-UREIDOIMIDAZOLINE DECARBOXYLASE-RELATED UniProtKB/TrEMBL
  2-OXO-4-HYDROXY-4-CARBOXY-5-UREIDOIMIDAZOLINE DECARBOXYLASE-RELATED UniProtKB/TrEMBL
Pfam OHCU_decarbox UniProtKB/TrEMBL
Superfamily-SCOP SSF158694 UniProtKB/TrEMBL
UniProt A0A8D1HKT1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D2BSR3 ENTREZGENE, UniProtKB/TrEMBL
  F1RSV0 ENTREZGENE, UniProtKB/TrEMBL