PEX11A (peroxisomal biogenesis factor 11 alpha) - Rat Genome Database

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Gene: PEX11A (peroxisomal biogenesis factor 11 alpha) Sus scrofa
Analyze
Symbol: PEX11A
Name: peroxisomal biogenesis factor 11 alpha (Ensembl:peroxisomal biosis factor 11 alpha)
RGD ID: 13864322
Description: ENCODES a protein that exhibits protein homodimerization activity (inferred); INVOLVED IN brown fat cell differentiation (ortholog); peroxisome membrane biogenesis (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); Chemical and Drug Induced Liver Injury (ortholog); colorectal cancer (ortholog); FOUND IN peroxisomal membrane (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: peroxisomal biogenesis factor 11A; peroxisomal membrane protein 11A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl755,256,220 - 55,264,247 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1755,256,239 - 55,264,253 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2760,145,337 - 60,153,336 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PEX11A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl755,256,220 - 55,264,247 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1755,256,239 - 55,264,253 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2760,145,337 - 60,153,336 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PEX11A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381589,681,535 - 89,690,754 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1589,677,764 - 89,690,783 (-)EnsemblGRCh38hg38GRCh38
GRCh371590,224,766 - 90,233,985 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361588,027,288 - 88,034,962 (-)NCBINCBI36Build 36hg18NCBI36
Build 341588,027,292 - 88,034,962NCBI
Celera1566,629,060 - 66,636,731 (-)NCBICelera
Cytogenetic Map15q26.1NCBI
HuRef1566,337,719 - 66,346,969 (-)NCBIHuRef
CHM1_11590,065,595 - 90,074,847 (-)NCBICHM1_1
T2T-CHM13v2.01587,437,417 - 87,446,633 (-)NCBIT2T-CHM13v2.0
Pex11a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39779,385,705 - 79,392,879 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl779,385,705 - 79,392,879 (-)EnsemblGRCm39 Ensembl
GRCm38779,735,957 - 79,743,131 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl779,735,957 - 79,743,131 (-)EnsemblGRCm38mm10GRCm38
MGSCv37786,882,150 - 86,887,911 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36779,610,777 - 79,616,538 (-)NCBIMGSCv36mm8
Celera777,136,478 - 77,142,240 (-)NCBICelera
Cytogenetic Map7D2NCBI
cM Map745.12NCBI
Pex11a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81143,089,410 - 143,096,491 (-)NCBIGRCr8
mRatBN7.21133,680,091 - 133,687,172 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1133,680,091 - 133,687,172 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1141,589,549 - 141,596,507 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01148,758,938 - 148,765,910 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01141,676,644 - 141,683,616 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01141,474,189 - 141,481,270 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1141,474,180 - 141,481,315 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01142,435,410 - 142,442,491 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41135,513,735 - 135,520,816 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11135,593,304 - 135,685,129 (-)NCBI
Celera1125,743,709 - 125,750,790 (-)NCBICelera
Cytogenetic Map1q31NCBI
Pex11a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541615,527,941 - 15,534,424 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541615,527,925 - 15,537,497 (+)NCBIChiLan1.0ChiLan1.0
PEX11A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21679,231,159 - 79,240,431 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11582,936,655 - 82,945,276 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01568,375,201 - 68,384,440 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11587,581,581 - 87,590,684 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1587,581,564 - 87,590,684 (-)Ensemblpanpan1.1panPan2
PEX11A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1352,674,363 - 52,684,776 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl352,674,348 - 52,684,660 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha355,308,322 - 55,318,739 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0353,090,753 - 53,101,172 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl353,090,755 - 53,101,151 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1352,612,919 - 52,623,332 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0352,824,121 - 52,833,237 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0353,163,246 - 53,173,666 (-)NCBIUU_Cfam_GSD_1.0
Pex11a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640130,853,950 - 130,861,573 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648315,472,949 - 15,480,648 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648315,474,484 - 15,480,527 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PEX11A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1298,220,082 - 8,229,448 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl298,221,920 - 8,229,243 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605938,584,059 - 38,593,190 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pex11a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476816,751,366 - 16,760,326 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476816,751,366 - 16,759,829 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PEX11A
138 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 3 15 2 1
Low 8 4 5 2 8 3 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000022362   ⟹   ENSSSCP00000021455
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl755,256,243 - 55,264,233 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000068015   ⟹   ENSSSCP00000061401
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl755,256,243 - 55,264,247 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000068897   ⟹   ENSSSCP00000072925
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl755,255,675 - 55,320,357 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000092732   ⟹   ENSSSCP00000078182
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl755,256,220 - 55,264,233 (-)Ensembl
RefSeq Acc Id: XM_005653526   ⟹   XP_005653583
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1755,256,239 - 55,264,253 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005653527   ⟹   XP_005653584
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1755,256,239 - 55,264,247 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005653583   ⟸   XM_005653526
- Peptide Label: isoform X1
- UniProtKB: F1SK16 (UniProtKB/TrEMBL),   A0A4X1U2I9 (UniProtKB/TrEMBL),   A0A0B8S034 (UniProtKB/TrEMBL),   A0A8D1G044 (UniProtKB/TrEMBL),   A0A8D0JHV2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005653584   ⟸   XM_005653527
- Peptide Label: isoform X2
- UniProtKB: A0A8D0JHM5 (UniProtKB/TrEMBL),   A0A8D1WQY1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000061401   ⟸   ENSSSCT00000068015
RefSeq Acc Id: ENSSSCP00000072925   ⟸   ENSSSCT00000068897
RefSeq Acc Id: ENSSSCP00000021455   ⟸   ENSSSCT00000022362
RefSeq Acc Id: ENSSSCP00000078182   ⟸   ENSSSCT00000092732


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000027052 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005025398 UniProtKB/TrEMBL
  ENSSSCG00015025306 UniProtKB/TrEMBL
  ENSSSCG00025076458 UniProtKB/TrEMBL
  ENSSSCG00030024688 UniProtKB/TrEMBL
  ENSSSCG00035057059 UniProtKB/TrEMBL
  ENSSSCG00040073315 UniProtKB/TrEMBL
  ENSSSCG00045028262 UniProtKB/TrEMBL
  ENSSSCG00050025614 UniProtKB/TrEMBL
  ENSSSCG00055015975 UniProtKB/TrEMBL
  ENSSSCG00060070959 UniProtKB/TrEMBL
  ENSSSCG00065043173 UniProtKB/TrEMBL
  ENSSSCG00070013664 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000022362 ENTREZGENE
  ENSSSCT00000022362.4 UniProtKB/TrEMBL
  ENSSSCT00000068015.2 UniProtKB/TrEMBL
  ENSSSCT00000092732.1 UniProtKB/TrEMBL
  ENSSSCT00005040192.1 UniProtKB/TrEMBL
  ENSSSCT00005040347.1 UniProtKB/TrEMBL
  ENSSSCT00005040399.1 UniProtKB/TrEMBL
  ENSSSCT00015033583.1 UniProtKB/TrEMBL
  ENSSSCT00015033729.1 UniProtKB/TrEMBL
  ENSSSCT00025105896.1 UniProtKB/TrEMBL
  ENSSSCT00025105902.1 UniProtKB/TrEMBL
  ENSSSCT00030034440.1 UniProtKB/TrEMBL
  ENSSSCT00030034446.1 UniProtKB/TrEMBL
  ENSSSCT00035076306.1 UniProtKB/TrEMBL
  ENSSSCT00035076309.1 UniProtKB/TrEMBL
  ENSSSCT00040101130.1 UniProtKB/TrEMBL
  ENSSSCT00040101158.1 UniProtKB/TrEMBL
  ENSSSCT00045048151.1 UniProtKB/TrEMBL
  ENSSSCT00045048215.1 UniProtKB/TrEMBL
  ENSSSCT00050034499.1 UniProtKB/TrEMBL
  ENSSSCT00050034500.1 UniProtKB/TrEMBL
  ENSSSCT00055031450.1 UniProtKB/TrEMBL
  ENSSSCT00055031540.1 UniProtKB/TrEMBL
  ENSSSCT00055031578.1 UniProtKB/TrEMBL
  ENSSSCT00060096942.1 UniProtKB/TrEMBL
  ENSSSCT00060096957.1 UniProtKB/TrEMBL
  ENSSSCT00060096971.1 UniProtKB/TrEMBL
  ENSSSCT00065059034.1 UniProtKB/TrEMBL
  ENSSSCT00065059035.1 UniProtKB/TrEMBL
  ENSSSCT00065059039.1 UniProtKB/TrEMBL
  ENSSSCT00070026646.1 UniProtKB/TrEMBL
  ENSSSCT00070026653.1 UniProtKB/TrEMBL
  ENSSSCT00070026663.1 UniProtKB/TrEMBL
InterPro PEX11 UniProtKB/TrEMBL
KEGG Report ssc:100157485 UniProtKB/TrEMBL
NCBI Gene PEX11A ENTREZGENE
PANTHER PEROXISOMAL BIOGENESIS FACTOR 11 UniProtKB/TrEMBL
  PEROXISOMAL MEMBRANE PROTEIN 11A UniProtKB/TrEMBL
Pfam PEX11 UniProtKB/TrEMBL
UniProt A0A0B8S034 ENTREZGENE
  A0A4X1U2I9 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1U2K2_PIG UniProtKB/TrEMBL
  A0A4X1U2V7_PIG UniProtKB/TrEMBL
  A0A5G2QCU8_PIG UniProtKB/TrEMBL
  A0A8D0JHM5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0JHV2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1G044 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1II55_PIG UniProtKB/TrEMBL
  A0A8D1QZ90_PIG UniProtKB/TrEMBL
  A0A8D1WQY1 ENTREZGENE, UniProtKB/TrEMBL
  F1SK16 ENTREZGENE
UniProt Secondary A0A8W4FFT8 UniProtKB/TrEMBL
  F1SK16 UniProtKB/TrEMBL
VGNC ID VGNC:91321 ENTREZGENE