PMS1 (PMS1 homolog 1, mismatch repair system component) - Rat Genome Database

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Gene: PMS1 (PMS1 homolog 1, mismatch repair system component) Sus scrofa
Analyze
Symbol: PMS1
Name: PMS1 homolog 1, mismatch repair system component
RGD ID: 13860691
Description: ENCODES a protein that exhibits ATP binding (inferred); ATP hydrolysis activity (inferred); ATP-dependent DNA damage sensor activity (inferred); INVOLVED IN mismatch repair (ortholog); response to xenobiotic stimulus (ortholog); PARTICIPATES IN altered mismatch repair pathway; colorectal cancer pathway; mismatch repair pathway; ASSOCIATED WITH breast cancer (ortholog); Colonic Polyps (ortholog); colorectal cancer (ortholog); FOUND IN cytoplasm (inferred); mismatch repair complex (inferred); MutLalpha complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: PMS1 postmeiotic segregation increased 1; PMS1 protein homolog 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1594,351,630 - 94,476,506 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11594,351,603 - 94,476,505 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215105,412,685 - 105,513,299 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PMS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1594,351,630 - 94,476,506 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11594,351,603 - 94,476,505 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215105,412,685 - 105,513,299 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PMS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382189,784,450 - 189,877,629 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2189,784,085 - 189,877,629 (+)EnsemblGRCh38hg38GRCh38
GRCh372190,649,176 - 190,742,355 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362190,357,355 - 190,450,600 (+)NCBINCBI36Build 36hg18NCBI36
Build 342190,474,615 - 190,567,860NCBI
Celera2184,243,739 - 184,337,288 (+)NCBICelera
Cytogenetic Map2q32.2NCBI
HuRef2182,508,462 - 182,602,272 (+)NCBIHuRef
CHM1_12190,654,694 - 190,748,309 (+)NCBICHM1_1
T2T-CHM13v2.02190,273,733 - 190,366,996 (+)NCBIT2T-CHM13v2.0
Pms1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39153,225,794 - 53,336,190 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl153,228,346 - 53,336,177 (-)EnsemblGRCm39 Ensembl
GRCm38153,189,187 - 53,297,031 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl153,189,187 - 53,297,018 (-)EnsemblGRCm38mm10GRCm38
MGSCv37153,246,031 - 53,353,840 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36153,133,732 - 53,241,541 (-)NCBIMGSCv36mm8
Celera153,728,483 - 53,836,401 (-)NCBICelera
Cytogenetic Map1C1.1NCBI
cM Map126.99NCBI
Pms1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8955,721,393 - 55,832,225 (+)NCBIGRCr8
mRatBN7.2948,229,403 - 48,340,237 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl948,253,410 - 48,340,237 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx956,789,682 - 56,875,049 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0961,912,501 - 61,997,868 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0960,208,491 - 60,293,858 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0953,120,656 - 53,206,520 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl953,120,656 - 53,206,516 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0952,784,772 - 52,871,014 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4945,203,344 - 45,292,624 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1945,204,757 - 45,294,034 (+)NCBI
Celera945,919,538 - 46,005,758 (+)NCBICelera
Cytogenetic Map9q22NCBI
Pms1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554039,022,078 - 9,100,442 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554039,021,488 - 9,100,442 (-)NCBIChiLan1.0ChiLan1.0
PMS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21392,475,954 - 92,566,780 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B92,490,937 - 92,581,763 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B77,090,215 - 77,180,724 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B195,010,233 - 195,100,492 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B195,010,233 - 195,100,492 (+)Ensemblpanpan1.1panPan2
PMS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.137502,752 - 609,640 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl37502,747 - 790,904 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha371,475,758 - 1,583,050 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.037395,761 - 503,686 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl37395,722 - 503,685 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.137406,588 - 513,890 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.037375,065 - 482,126 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.037403,027 - 510,344 (+)NCBIUU_Cfam_GSD_1.0
Pms1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303148,621,339 - 148,718,585 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365068,119,494 - 8,197,768 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365068,118,816 - 8,197,040 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PMS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11075,305,129 - 75,392,193 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1075,311,887 - 75,392,590 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040124,084,971 - 124,175,531 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in PMS1
1872 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 2 1 4
Low 10 3 1 5 1 19 2 3 3
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013984337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021075389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021075390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021075391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021075392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021075393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021075394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021075395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021075396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021075397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021075398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021075399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021075400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021075401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002339169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002339170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK395067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GFLN01008159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSSCT00000017470   ⟹   ENSSSCP00000017000
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1594,377,458 - 94,470,705 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000037039   ⟹   ENSSSCP00000054943
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1594,377,458 - 94,476,506 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000037786   ⟹   ENSSSCP00000054896
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1594,351,638 - 94,476,504 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000048592   ⟹   ENSSSCP00000035488
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1594,377,416 - 94,601,889 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000052772   ⟹   ENSSSCP00000055751
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1594,377,435 - 94,436,465 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000059289   ⟹   ENSSSCP00000052520
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1594,351,324 - 94,476,505 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000062488   ⟹   ENSSSCP00000047157
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1594,351,638 - 94,476,504 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000067884   ⟹   ENSSSCP00000074424
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1594,351,630 - 94,475,872 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000076988   ⟹   ENSSSCP00000065466
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1594,387,032 - 94,601,889 (+)Ensembl
RefSeq Acc Id: XM_013984337   ⟹   XP_013839791
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11594,375,310 - 94,476,499 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021075389   ⟹   XP_020931048
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11594,377,415 - 94,476,075 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021075390   ⟹   XP_020931049
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11594,351,603 - 94,476,075 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021075391   ⟹   XP_020931050
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11594,377,609 - 94,476,075 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021075392   ⟹   XP_020931051
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11594,377,417 - 94,476,075 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021075393   ⟹   XP_020931052
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11594,377,394 - 94,476,499 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021075394   ⟹   XP_020931053
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11594,351,603 - 94,476,075 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021075395   ⟹   XP_020931054
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11594,377,432 - 94,476,075 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021075396   ⟹   XP_020931055
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11594,377,405 - 94,476,499 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021075397   ⟹   XP_020931056
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11594,377,411 - 94,476,499 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021075398   ⟹   XP_020931057
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11594,412,069 - 94,476,499 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021075399   ⟹   XP_020931058
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11594,377,403 - 94,476,505 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021075400   ⟹   XP_020931059
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11594,390,448 - 94,476,499 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021075401   ⟹   XP_020931060
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11594,435,490 - 94,476,499 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002339169
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11594,377,413 - 94,438,735 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002339170
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11594,377,415 - 94,476,075 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013839791 (Get FASTA)   NCBI Sequence Viewer  
  XP_020931048 (Get FASTA)   NCBI Sequence Viewer  
  XP_020931049 (Get FASTA)   NCBI Sequence Viewer  
  XP_020931050 (Get FASTA)   NCBI Sequence Viewer  
  XP_020931051 (Get FASTA)   NCBI Sequence Viewer  
  XP_020931052 (Get FASTA)   NCBI Sequence Viewer  
  XP_020931053 (Get FASTA)   NCBI Sequence Viewer  
  XP_020931054 (Get FASTA)   NCBI Sequence Viewer  
  XP_020931055 (Get FASTA)   NCBI Sequence Viewer  
  XP_020931056 (Get FASTA)   NCBI Sequence Viewer  
  XP_020931057 (Get FASTA)   NCBI Sequence Viewer  
  XP_020931058 (Get FASTA)   NCBI Sequence Viewer  
  XP_020931059 (Get FASTA)   NCBI Sequence Viewer  
  XP_020931060 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000017000.4
  ENSSSCP00000047157.2
  ENSSSCP00000054896
  ENSSSCP00000054896.1
  ENSSSCP00000054943
  ENSSSCP00000054943.3
  ENSSSCP00000055751.3
  ENSSSCP00000074424.1
  ENSSSCP00005014938.1
  ENSSSCP00005014954.1
  ENSSSCP00005014977.1
  ENSSSCP00005015007.1
  ENSSSCP00005015039.1
  ENSSSCP00005015068.1
  ENSSSCP00005015086.1
  ENSSSCP00005015093.1
  ENSSSCP00005015102.1
  ENSSSCP00005015151.1
  ENSSSCP00015015447.1
  ENSSSCP00015015544.1
  ENSSSCP00015015589.1
  ENSSSCP00015015617.1
  ENSSSCP00025018813.1
  ENSSSCP00025018851.1
  ENSSSCP00025018913.1
  ENSSSCP00025018972.1
  ENSSSCP00025019014.1
  ENSSSCP00025019043.1
  ENSSSCP00025019069.1
  ENSSSCP00025019118.1
  ENSSSCP00025019170.1
  ENSSSCP00030010397.1
  ENSSSCP00030010399.1
  ENSSSCP00030010403.1
  ENSSSCP00030010409.1
  ENSSSCP00030010413.1
  ENSSSCP00030010420.1
  ENSSSCP00030010426.1
  ENSSSCP00030010428.1
  ENSSSCP00035020862.1
  ENSSSCP00035020863.1
  ENSSSCP00035020867.1
  ENSSSCP00035020872.1
  ENSSSCP00035020875.1
  ENSSSCP00035020879.1
  ENSSSCP00035020886.1
  ENSSSCP00035020888.1
  ENSSSCP00035020899.1
  ENSSSCP00040011026.1
  ENSSSCP00040011078.1
  ENSSSCP00040011091.1
  ENSSSCP00040011094.1
  ENSSSCP00040011126.1
  ENSSSCP00045012485.1
  ENSSSCP00045012518.1
  ENSSSCP00045012551.1
  ENSSSCP00045012611.1
  ENSSSCP00045012664.1
  ENSSSCP00045012727.1
  ENSSSCP00045012758.1
  ENSSSCP00045012798.1
  ENSSSCP00045012840.1
  ENSSSCP00050006544.1
  ENSSSCP00050006565.1
  ENSSSCP00050006567.1
  ENSSSCP00055026345.1
  ENSSSCP00055026442.1
  ENSSSCP00055026506.1
  ENSSSCP00055026558.1
  ENSSSCP00055026657.1
  ENSSSCP00055026741.1
  ENSSSCP00055026813.1
  ENSSSCP00055026879.1
  ENSSSCP00060040736.1
  ENSSSCP00060040747.1
  ENSSSCP00060040758.1
  ENSSSCP00060040771.1
  ENSSSCP00060040781.1
  ENSSSCP00060040794.1
  ENSSSCP00060040807.1
  ENSSSCP00060040815.1
  ENSSSCP00065015763.1
  ENSSSCP00065015778.1
  ENSSSCP00065015788.1
  ENSSSCP00065015795.1
  ENSSSCP00070015190.1
  ENSSSCP00070015203.1
  ENSSSCP00070015223.1
  ENSSSCP00070015242.1
  ENSSSCP00070015247.1
  ENSSSCP00070015256.1
  ENSSSCP00070015264.1
  ENSSSCP00070015277.1
  ENSSSCP00070015288.1
  ENSSSCP00070015296.1
Reference Protein Sequences
RefSeq Acc Id: XP_020931049   ⟸   XM_021075390
- Peptide Label: isoform X1
- UniProtKB: A0A8D0VUC1 (UniProtKB/TrEMBL),   A0A8D1WK00 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020931053   ⟸   XM_021075394
- Peptide Label: isoform X2
- UniProtKB: A0A287BFI9 (UniProtKB/TrEMBL),   A0A4X1TJD9 (UniProtKB/TrEMBL),   A0A8D0VUC1 (UniProtKB/TrEMBL),   A0A8D1WK00 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013839791   ⟸   XM_013984337
- Peptide Label: isoform X1
- UniProtKB: A0A8D0VUC1 (UniProtKB/TrEMBL),   A0A8D1WK00 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020931052   ⟸   XM_021075393
- Peptide Label: isoform X2
- UniProtKB: A0A287BFI9 (UniProtKB/TrEMBL),   A0A4X1TJD9 (UniProtKB/TrEMBL),   A0A8D0VUC1 (UniProtKB/TrEMBL),   A0A8D1WK00 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020931058   ⟸   XM_021075399
- Peptide Label: isoform X5
- UniProtKB: A0A8D1DQW2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020931055   ⟸   XM_021075396
- Peptide Label: isoform X2
- UniProtKB: A0A287BFI9 (UniProtKB/TrEMBL),   A0A4X1TJD9 (UniProtKB/TrEMBL),   A0A8D0VUC1 (UniProtKB/TrEMBL),   A0A8D1WK00 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020931056   ⟸   XM_021075397
- Peptide Label: isoform X3
- UniProtKB: A0A8D0RVZ4 (UniProtKB/TrEMBL),   A0A287BEI8 (UniProtKB/TrEMBL),   A0A8D0NDB5 (UniProtKB/TrEMBL),   A0A8D0VRU2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020931048   ⟸   XM_021075389
- Peptide Label: isoform X1
- UniProtKB: A0A8D0VUC1 (UniProtKB/TrEMBL),   A0A8D1WK00 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020931051   ⟸   XM_021075392
- Peptide Label: isoform X1
- UniProtKB: A0A8D0VUC1 (UniProtKB/TrEMBL),   A0A8D1WK00 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020931054   ⟸   XM_021075395
- Peptide Label: isoform X2
- UniProtKB: A0A287BFI9 (UniProtKB/TrEMBL),   A0A4X1TJD9 (UniProtKB/TrEMBL),   A0A8D0VUC1 (UniProtKB/TrEMBL),   A0A8D1WK00 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020931050   ⟸   XM_021075391
- Peptide Label: isoform X1
- UniProtKB: A0A8D0VUC1 (UniProtKB/TrEMBL),   A0A8D1WK00 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020931059   ⟸   XM_021075400
- Peptide Label: isoform X6
- UniProtKB: A0A8D1DQW2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020931057   ⟸   XM_021075398
- Peptide Label: isoform X4
- UniProtKB: A0A8D1DQW2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020931060   ⟸   XM_021075401
- Peptide Label: isoform X7
- UniProtKB: A0A8D1DQW2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000035488   ⟸   ENSSSCT00000048592
RefSeq Acc Id: ENSSSCP00000052520   ⟸   ENSSSCT00000059289
RefSeq Acc Id: ENSSSCP00000017000   ⟸   ENSSSCT00000017470
RefSeq Acc Id: ENSSSCP00000054943   ⟸   ENSSSCT00000037039
RefSeq Acc Id: ENSSSCP00000055751   ⟸   ENSSSCT00000052772
RefSeq Acc Id: ENSSSCP00000065466   ⟸   ENSSSCT00000076988
RefSeq Acc Id: ENSSSCP00000047157   ⟸   ENSSSCT00000062488
RefSeq Acc Id: ENSSSCP00000074424   ⟸   ENSSSCT00000067884
RefSeq Acc Id: ENSSSCP00000054896   ⟸   ENSSSCT00000037786
Protein Domains
HMG box


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000016045 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005014968 UniProtKB/TrEMBL
  ENSSSCG00015029221 UniProtKB/TrEMBL
  ENSSSCG00025032469 UniProtKB/TrEMBL
  ENSSSCG00030016748 UniProtKB/TrEMBL
  ENSSSCG00035039103 UniProtKB/TrEMBL
  ENSSSCG00040019276 UniProtKB/TrEMBL
  ENSSSCG00045010633 UniProtKB/TrEMBL
  ENSSSCG00050011863 UniProtKB/TrEMBL
  ENSSSCG00055016689 UniProtKB/TrEMBL
  ENSSSCG00060068904 UniProtKB/TrEMBL
  ENSSSCG00065027797 UniProtKB/TrEMBL
  ENSSSCG00070009433 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000017470 ENTREZGENE
  ENSSSCT00000017470.5 UniProtKB/TrEMBL
  ENSSSCT00000037039 ENTREZGENE
  ENSSSCT00000037039.3 UniProtKB/TrEMBL
  ENSSSCT00000037786 ENTREZGENE
  ENSSSCT00000037786.3 UniProtKB/TrEMBL
  ENSSSCT00000052772.3 UniProtKB/TrEMBL
  ENSSSCT00000062488.3 UniProtKB/TrEMBL
  ENSSSCT00000067884.1 UniProtKB/TrEMBL
  ENSSSCT00005024806.1 UniProtKB/TrEMBL
  ENSSSCT00005024822.1 UniProtKB/TrEMBL
  ENSSSCT00005024852.1 UniProtKB/TrEMBL
  ENSSSCT00005024888.1 UniProtKB/TrEMBL
  ENSSSCT00005024929.1 UniProtKB/TrEMBL
  ENSSSCT00005024970.1 UniProtKB/TrEMBL
  ENSSSCT00005025001.1 UniProtKB/TrEMBL
  ENSSSCT00005025011.1 UniProtKB/TrEMBL
  ENSSSCT00005025029.1 UniProtKB/TrEMBL
  ENSSSCT00005025107.1 UniProtKB/TrEMBL
  ENSSSCT00015038866.1 UniProtKB/TrEMBL
  ENSSSCT00015039068.1 UniProtKB/TrEMBL
  ENSSSCT00015039230.1 UniProtKB/TrEMBL
  ENSSSCT00015039338.1 UniProtKB/TrEMBL
  ENSSSCT00025044207.1 UniProtKB/TrEMBL
  ENSSSCT00025044283.1 UniProtKB/TrEMBL
  ENSSSCT00025044419.1 UniProtKB/TrEMBL
  ENSSSCT00025044558.1 UniProtKB/TrEMBL
  ENSSSCT00025044651.1 UniProtKB/TrEMBL
  ENSSSCT00025044717.1 UniProtKB/TrEMBL
  ENSSSCT00025044781.1 UniProtKB/TrEMBL
  ENSSSCT00025044885.1 UniProtKB/TrEMBL
  ENSSSCT00025044998.1 UniProtKB/TrEMBL
  ENSSSCT00030023185.1 UniProtKB/TrEMBL
  ENSSSCT00030023191.1 UniProtKB/TrEMBL
  ENSSSCT00030023197.1 UniProtKB/TrEMBL
  ENSSSCT00030023207.1 UniProtKB/TrEMBL
  ENSSSCT00030023213.1 UniProtKB/TrEMBL
  ENSSSCT00030023224.1 UniProtKB/TrEMBL
  ENSSSCT00030023233.1 UniProtKB/TrEMBL
  ENSSSCT00030023240.1 UniProtKB/TrEMBL
  ENSSSCT00035051948.1 UniProtKB/TrEMBL
  ENSSSCT00035051955.1 UniProtKB/TrEMBL
  ENSSSCT00035051961.1 UniProtKB/TrEMBL
  ENSSSCT00035051970.1 UniProtKB/TrEMBL
  ENSSSCT00035051978.1 UniProtKB/TrEMBL
  ENSSSCT00035051990.1 UniProtKB/TrEMBL
  ENSSSCT00035052003.1 UniProtKB/TrEMBL
  ENSSSCT00035052008.1 UniProtKB/TrEMBL
  ENSSSCT00035052024.1 UniProtKB/TrEMBL
  ENSSSCT00040026082.1 UniProtKB/TrEMBL
  ENSSSCT00040026206.1 UniProtKB/TrEMBL
  ENSSSCT00040026225.1 UniProtKB/TrEMBL
  ENSSSCT00040026231.1 UniProtKB/TrEMBL
  ENSSSCT00040026297.1 UniProtKB/TrEMBL
  ENSSSCT00045018124.1 UniProtKB/TrEMBL
  ENSSSCT00045018171.1 UniProtKB/TrEMBL
  ENSSSCT00045018213.1 UniProtKB/TrEMBL
  ENSSSCT00045018288.1 UniProtKB/TrEMBL
  ENSSSCT00045018361.1 UniProtKB/TrEMBL
  ENSSSCT00045018454.1 UniProtKB/TrEMBL
  ENSSSCT00045018502.1 UniProtKB/TrEMBL
  ENSSSCT00045018564.1 UniProtKB/TrEMBL
  ENSSSCT00045018652.1 UniProtKB/TrEMBL
  ENSSSCT00050015977.1 UniProtKB/TrEMBL
  ENSSSCT00050016020.1 UniProtKB/TrEMBL
  ENSSSCT00050016022.1 UniProtKB/TrEMBL
  ENSSSCT00055033080.1 UniProtKB/TrEMBL
  ENSSSCT00055033197.1 UniProtKB/TrEMBL
  ENSSSCT00055033291.1 UniProtKB/TrEMBL
  ENSSSCT00055033364.1 UniProtKB/TrEMBL
  ENSSSCT00055033503.1 UniProtKB/TrEMBL
  ENSSSCT00055033619.1 UniProtKB/TrEMBL
  ENSSSCT00055033728.1 UniProtKB/TrEMBL
  ENSSSCT00055033825.1 UniProtKB/TrEMBL
  ENSSSCT00060094155.1 UniProtKB/TrEMBL
  ENSSSCT00060094178.1 UniProtKB/TrEMBL
  ENSSSCT00060094205.1 UniProtKB/TrEMBL
  ENSSSCT00060094242.1 UniProtKB/TrEMBL
  ENSSSCT00060094277.1 UniProtKB/TrEMBL
  ENSSSCT00060094322.1 UniProtKB/TrEMBL
  ENSSSCT00060094353.1 UniProtKB/TrEMBL
  ENSSSCT00060094384.1 UniProtKB/TrEMBL
  ENSSSCT00065037465.1 UniProtKB/TrEMBL
  ENSSSCT00065037485.1 UniProtKB/TrEMBL
  ENSSSCT00065037502.1 UniProtKB/TrEMBL
  ENSSSCT00065037517.1 UniProtKB/TrEMBL
  ENSSSCT00070018290.1 UniProtKB/TrEMBL
  ENSSSCT00070018306.1 UniProtKB/TrEMBL
  ENSSSCT00070018327.1 UniProtKB/TrEMBL
  ENSSSCT00070018347.1 UniProtKB/TrEMBL
  ENSSSCT00070018354.1 UniProtKB/TrEMBL
  ENSSSCT00070018369.1 UniProtKB/TrEMBL
  ENSSSCT00070018378.1 UniProtKB/TrEMBL
  ENSSSCT00070018392.1 UniProtKB/TrEMBL
  ENSSSCT00070018404.1 UniProtKB/TrEMBL
  ENSSSCT00070018412.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.30.10 UniProtKB/TrEMBL
  3.30.230.10 UniProtKB/TrEMBL
  3.30.565.10 UniProtKB/TrEMBL
InterPro DNA_mismatch_repair_CS UniProtKB/TrEMBL
  DNA_mismatch_repair_N UniProtKB/TrEMBL
  DNA_mismatch_S5_2-like UniProtKB/TrEMBL
  HATPase_C_sf UniProtKB/TrEMBL
  HMG_box_dom UniProtKB/TrEMBL
  HMG_box_dom_sf UniProtKB/TrEMBL
  MutL/Mlh/Pms UniProtKB/TrEMBL
  Ribosomal_S5_D2-typ_fold UniProtKB/TrEMBL
  Ribosomal_S5_D2-typ_fold_subgr UniProtKB/TrEMBL
NCBI Gene PMS1 ENTREZGENE
PANTHER PMS1 PROTEIN HOMOLOG 1 UniProtKB/TrEMBL
  PTHR10073 UniProtKB/TrEMBL
Pfam DNA_mis_repair UniProtKB/TrEMBL
  HATPase_c_3 UniProtKB/TrEMBL
  HMG_box UniProtKB/TrEMBL
PROSITE DNA_MISMATCH_REPAIR_1 UniProtKB/TrEMBL
  HMG_BOX_2 UniProtKB/TrEMBL
SMART DNA_mis_repair UniProtKB/TrEMBL
  HMG UniProtKB/TrEMBL
Superfamily-SCOP SSF47095 UniProtKB/TrEMBL
  SSF54211 UniProtKB/TrEMBL
  SSF55874 UniProtKB/TrEMBL
UniProt A0A287ATG5_PIG UniProtKB/TrEMBL
  A0A287BEI8 ENTREZGENE, UniProtKB/TrEMBL
  A0A287BFI9 ENTREZGENE, UniProtKB/TrEMBL
  A0A287BGT8_PIG UniProtKB/TrEMBL
  A0A4X1TFJ5_PIG UniProtKB/TrEMBL
  A0A4X1TFL2_PIG UniProtKB/TrEMBL
  A0A4X1TH76_PIG UniProtKB/TrEMBL
  A0A4X1TIZ9_PIG UniProtKB/TrEMBL
  A0A4X1TJB1_PIG UniProtKB/TrEMBL
  A0A4X1TJB6_PIG UniProtKB/TrEMBL
  A0A4X1TJD9 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TJI0_PIG UniProtKB/TrEMBL
  A0A4X1TJU5_PIG UniProtKB/TrEMBL
  A0A4X1TJW1_PIG UniProtKB/TrEMBL
  A0A5G2RH26_PIG UniProtKB/TrEMBL
  A0A8D0IKP3_PIG UniProtKB/TrEMBL
  A0A8D0IKZ3_PIG UniProtKB/TrEMBL
  A0A8D0IQR7_PIG UniProtKB/TrEMBL
  A0A8D0IX80_PIG UniProtKB/TrEMBL
  A0A8D0LKB1_PIG UniProtKB/TrEMBL
  A0A8D0N9J6_PIG UniProtKB/TrEMBL
  A0A8D0NDB5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0RVM8_PIG UniProtKB/TrEMBL
  A0A8D0RVZ4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0RY46_PIG UniProtKB/TrEMBL
  A0A8D0UPE5_PIG UniProtKB/TrEMBL
  A0A8D0VRS1_PIG UniProtKB/TrEMBL
  A0A8D0VRU2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0VSN7_PIG UniProtKB/TrEMBL
  A0A8D0VU56_PIG UniProtKB/TrEMBL
  A0A8D0VUC1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1C1C0_PIG UniProtKB/TrEMBL
  A0A8D1DQW2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1DQX2_PIG UniProtKB/TrEMBL
  A0A8D1DRF1_PIG UniProtKB/TrEMBL
  A0A8D1DSS5_PIG UniProtKB/TrEMBL
  A0A8D1JZF2_PIG UniProtKB/TrEMBL
  A0A8D1KTX4_PIG UniProtKB/TrEMBL
  A0A8D1QYK0_PIG UniProtKB/TrEMBL
  A0A8D1R2R9_PIG UniProtKB/TrEMBL
  A0A8D1R5G0_PIG UniProtKB/TrEMBL
  A0A8D1WK00 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1WM18_PIG UniProtKB/TrEMBL
  A0A8D1Y5G8_PIG UniProtKB/TrEMBL
  A0A8D2BSS0_PIG UniProtKB/TrEMBL
  A0A8D2C3H2_PIG UniProtKB/TrEMBL
  F1SN54_PIG UniProtKB/TrEMBL
VGNC ID VGNC:98205 ENTREZGENE