CAPN12 (calpain 12) - Rat Genome Database

Name: CAPN12
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: CAPN12 (calpain 12) Sus scrofa

Analyze

Symbol:

CAPN12

Name:

calpain 12

RGD ID:

13858640

Description:

ENCODES a protein that exhibits calcium ion binding (inferred); calcium-dependent cysteine-type endopeptidase activity (inferred); cysteine-type peptidase activity (inferred); INVOLVED IN proteolysis (inferred); ASSOCIATED WITH maturity-onset diabetes of the young type 1 (ortholog); type 2 diabetes mellitus (ortholog); FOUND IN cytoplasm (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

calpain-12

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CAPN12 (calpain 12)	HGNC	EggNOG, Ensembl, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Capn12 (calpain 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Capn12 (calpain 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Capn12 (calpain 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CAPN12 (calpain 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CAPN12 (calpain 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Capn12 (calpain 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CAPN12 (calpain 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Capn12 (calpain 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	47,565,440 - 47,578,994 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	47,565,917 - 47,579,278 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	43,126,499 - 43,139,839 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

maturity-onset diabetes of the young type 1 (ISO)

type 2 diabetes mellitus (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

proteolysis (IBA,IEA)

Cellular Component

cytoplasm (IBA,IEA)

Molecular Function

calcium ion binding (IEA)

calcium-dependent cysteine-type endopeptidase activity (IBA,IEA)

cysteine-type peptidase activity (IEA)

metal ion binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

CAPN12
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	47,565,440 - 47,578,994 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	47,565,917 - 47,579,278 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	43,126,499 - 43,139,839 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CAPN12
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	38,730,192 - 38,744,693 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	38,730,187 - 38,769,904 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	39,220,832 - 39,235,114 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	43,912,672 - 43,926,954 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	43,912,671 - 43,926,954	NCBI
Celera	19	36,022,825 - 36,037,032 (-)	NCBI		Celera
Cytogenetic Map	19	q13.2	NCBI
HuRef	19	35,667,615 - 35,682,075 (-)	NCBI		HuRef
CHM1_1	19	39,221,640 - 39,235,595 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	41,534,246 - 41,548,645 (-)	NCBI		T2T-CHM13v2.0

Capn12
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	28,580,890 - 28,593,010 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	28,580,847 - 28,592,988 (+)	Ensembl		GRCm39 Ensembl
GRCm38	7	28,881,465 - 28,893,585 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	28,881,422 - 28,893,563 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	29,666,675 - 29,678,604 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	28,590,417 - 28,602,345 (+)	NCBI		MGSCv36	mm8
Celera	7	23,443,096 - 23,455,025 (+)	NCBI		Celera
Cytogenetic Map	7	B1	NCBI
cM Map	7	16.94	NCBI

Capn12
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	93,298,571 - 93,311,220 (+)	NCBI		GRCr8
mRatBN7.2	1	84,171,059 - 84,183,161 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	84,171,059 - 84,183,119 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	89,580,975 - 89,593,038 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	98,040,078 - 98,052,143 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	91,336,837 - 91,348,901 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	87,066,289 - 87,078,348 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	87,066,289 - 87,078,348 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	88,246,907 - 88,258,966 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	83,989,000 - 84,001,059 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	84,066,985 - 84,078,502 (+)	NCBI
Celera	1	78,561,187 - 78,573,226 (+)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

Capn12
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955468	761,015 - 770,327 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955468	761,015 - 771,387 (+)	NCBI	ChiLan1.0	ChiLan1.0

CAPN12
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	45,022,279 - 45,036,564 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	46,892,628 - 46,907,061 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	35,824,858 - 35,839,633 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	44,396,099 - 44,409,441 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	44,394,323 - 44,409,441 (-)	Ensembl	panpan1.1		panPan2

CAPN12
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	114,342,210 - 114,347,873 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	114,342,521 - 114,354,482 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	113,747,505 - 113,759,624 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	114,944,822 - 114,956,873 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	114,942,987 - 114,956,640 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	114,518,101 - 114,530,073 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	114,135,462 - 114,147,615 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	115,174,114 - 115,186,160 (+)	NCBI		UU_Cfam_GSD_1.0

Capn12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	13,237,769 - 13,261,377 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936801	1,403,256 - 1,412,570 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936801	1,402,813 - 1,426,733 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CAPN12
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	33,372,942 - 33,403,800 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	33,373,372 - 33,385,758 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666073	11,323,650 - 11,370,402 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Capn12
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624794	12,113,970 - 12,124,499 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624794	12,114,392 - 12,125,633 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in CAPN12
317 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	nervous system
High
Medium
Low	3
Below cutoff	6

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003481847	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021094345	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021094346	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021094347	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002344647	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000041	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FP245504	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01127318	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000003291 ⟹ ENSSSCP00000003209

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	6	47,565,440 - 47,578,994 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000092123 ⟹ ENSSSCP00000075058

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	6	47,565,440 - 47,578,994 (-)	Ensembl

RefSeq Acc Id:

XM_003481847 ⟹ XP_003481895

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	6	47,566,298 - 47,579,278 (-)	NCBI

Sequence:

show sequence

GAAGAGACGAGAGAGAAGATGAGGCCAAGATGGAGGAGAGAGATAGGGCGGCAGGCAGAGTGAG
AAACTGTCAGATGGAGACCCAGGGCTACAGTAAAGACACCTCCCTGCCCTCCTCTGCCCCACAG
GGGGAGGCTCAGAGGGACAAGCTGCAGAGATGTGCCTCCCACACTGACCTCCTTCTAGGCACTC
CCACATGGCAGCCAGTCCTCCTTCAGCTCTGCCCACCTTCCCTCCTGCTGCTGGCCAAGCCCAT
TAAGCTACCGCCCTGGCCACAACTGAAGGCCCCACGCCCTGGGGAGGAAAGCGCTGAAGAGGCG
TCCTTGCTCCCCAGCACCCCAAACCATCAATTAGTATTAACGAGGGAGGATTCCTCACTGCCTA
AAGACCCCCATCTGGACTCAGGGGGAGCAGAGGCCCCACCCCCGTGACTCAGGCACTTAAAGGG
CCTGGAGCCAGCCTGGGAGCCCACAAAGGGTCCGGATGGCGTGTGGCAGCAGGAGAATCACCAT
CCAGCTGGTGAACGAGGAGGCAGAGCCCGGAACCAAGGGCCCAAAGCCTTTTCGGGGCCAGAGC
TACAGAGCAATCCAAGCAGCCTGCCTGGATGAGGGCATCCTGTTCCGAGATCCCTACTTCCCTG
CTGGCCCTGATGCCCTTGGCTATGACCAGCTGGGGCCGGACTCCGAGAAGGCCAAAGGGGTGGA
ATGGAAGAGGCCCCATGAGTTCTGTGCTGAACCCCAGTTCATCTGTGAGGACATGAGCCGAACA
GATGTGTGTCAGGGGAGCCTGGGTAACTGCTGGTTTCTCGCGGCCGCTGCCTCCCTCACCCTGT
ACCCCCGGCTCCTGTGCCGGGTGGTCCCCCCGGGTCAGGGTTTCCAAGATGGCTACGCAGGTGT
CTTCCACTTCCAGCTCTGGCAGTTTGGACACTGGGTGGACGTCGTGGTGGACGACAGGCTGCCT
GTGCGTGAGGGGAAGCTGGTGTTCGTGCGCTCGGCTCAGCGGAACGAGTTCTGGGCCCCGCTTC
TGGAAAAGGCCTATGCTAAGCTCCACGGCTCCTACGAGGTGATGCGAGGCGGCCACATGAATGA
GGCTTTCGTGGACTTCACAGGCGGCGTGGGCGAGGTGCTCTACCTGAGGCAAAACGCCTCTGGC
CTCTTCGCCGCCCTGCGCCACGCCCTGGCCAAGGAGTCCCTCGTGGGTGCCACAGCCCTGAGCG
ATCGGGGCGAGTACCGTACGGGAGACGGGCTGGTGAAAGGACACGCATATTCTGTCACAGGCAC
ACACAAGGTGTCACTGGGCTTCACTAAGCTGCGGCTGCTGCGGCTGCGGAACCCGTGGGGCCGC
GTGGAGTGGACCGGAGCCTGGAGCGACAGCTGCCCGCGCTGGGACGAGCTCCCCACAGAGTGGC
GAGATGCCTTGTTGGTGAGAAAGGAAGACGGCGAGTTCTGGATGGAGCTGCAGGACTTCCTCTG
CCACTTCGACACCGTCCAGATCTGTTCACTGAGCCCGGAGGTGCTGGGCCCCAGCCCGGCTGGA
GGCGGCTGGCACATCCACACCTTCCAAGGCCGCTGGGTGCGTGGCTTCAGCTCTGGCGGGAGCC
AGCCCGGTGCCGAAACCTTCTGGACCAACCCCCAGTTCCGGCTGACGCTGCTGGAGCCTGATGA
GGAGGATGAAGATGAGGAGGGGCCCTGGGGGGGCTGGGGGGCCACGGGGTCACGGGGCCCCACG
CAGGGGGGCCGCAATCCCAAGTGCACTGTTCTCCTGTCACTCATCCAGCGCAACCGGCGGCACC
TGAGGGCCCAGGGCCTCATGTACCTCACCGTGGGCTTCCACGTGTTCCAGATCCCGGAGGAGTT
GCTGGGCCTGTGGGACTCCCCGCGCAGCCGCGCGCTCCTGCCGAGCCTGCTGCGCGCTGACCGC
TCGCCCTTCTGCGCCCGCCGCGACGTAAGCCGCCGCTGCCGGCTGCGCCCCGGCCACTACCTGG
TGGTGCCCAGCACCGCCCGTGCCGGCGACGAGGCCGACTTCACGCTGCGTGTCTTCTCAGAGCG
CCGCCACACCGCCATGGAGATTGATGACGTGATCAGCGCGGACCTTCATGCCCTCATGGTCCCC
TACATTCCCCTGGAGCTGGGATTGGAGCAGCTGTTCCAGGAGCTGGCAGGAGAGGAGGAAGAAC
TCCGTGCGCCTCAACTCCAGACCTTGCTAAGCATTGCCTTGGAGCCTGCCAGGGCCCATGCCTG
GACCCCTAGAGAGATCGGGCTCAGGACCTGTGAGCAGCTGCTGCGGTGCTTTGGGCATGGGCGA
AGCCTGGCCCTGTACCACTTCCAGCAGCTCTGGGGCCACCTCCTGGAGTGGCAGGCCACATTTG
ACAAATTCGACGAGGATGCCTCTGGAACCATGAACTCCTACGAGCTGAGGCTGGCCTTGAACGC
AGCAGGCTTCCACCTGAACAACCAGCTGACGCAGGCCCTCACGAGCCGCTACCGGGACAGCCGT
CTGCGTGTGGACTTTGAGCGCTTTGTGTCCTGTATGGCCCAGCTTCTCTGCCTCTTCCGCCACT
GCAGCCAGCACCTGGACGGGGGCGAGGGAGTCATCTGCCTGACCCACAGACAGTGGATGGAGGT
GGCCACCTTCTCCTAGCATCTCAGCACGGAGCACCTGCAGCTGGAGGCAGGAGAGCTGCTGGGA
GCCCTGTCCTTCCCGCCTCCCAGCCTGGGCCAGGATTTATGCCACAGGGAGGGGCTGAGGCTTC
AGCATCAAGCAGTGGGTCAGAGCCTGGCCGT

hide sequence

RefSeq Acc Id:

XM_021094345 ⟹ XP_020950004

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	6	47,565,917 - 47,579,278 (-)	NCBI

Sequence:

show sequence

GAAGAGACGAGAGAGAAGATGAGGCCAAGATGGAGGAGAGAGATAGGGCGGCAGGCAGAGTGAG
AAACTGTCAGATGGAGACCCAGGGCTACAGTAAAGACACCTCCCTGCCCTCCTCTGCCCCACAG
GGGGAGGCTCAGAGGGACAAGCTGCAGAGATGTGCCTCCCACACTGACCTCCTTCTAGGCACTC
CCACATGGCAGCCAGTCCTCCTTCAGCTCTGCCCACCTTCCCTCCTGCTGCTGGCCAAGCCCAT
TAAGCTACCGCCCTGGCCACAACTGAAGGCCCCACGCCCTGGGGAGGAAAGCGCTGAAGAGGCG
TCCTTGCTCCCCAGCACCCCAAACCATCAATTAGTATTAACGAGGGAGGATTCCTCACTGCCTA
AAGACCCCCATCTGGACTCAGGGGGAGCAGAGGCCCCACCCCCGTGACTCAGGCACTTAAAGGG
CCTGGAGCCAGCCTGGGAGCCCACAAAGGGTCCGGATGGCGTGTGGCAGCAGGAGAATCACCAT
CCAGCTGGTGAACGAGGAGGCAGAGCCCGGAACCAAGGGCCCAAAGCCTTTTCGGGGCCAGAGC
TACAGAGCAATCCAAGCAGCCTGCCTGGATGAGGGCATCCTGTTCCGAGATCCCTACTTCCCTG
CTGGCCCTGATGCCCTTGGCTATGACCAGCTGGGGCCGGACTCCGAGAAGGCCAAAGGGGTGGA
ATGGAAGAGGCCCCATGAGTTCTGTGCTGAACCCCAGTTCATCTGTGAGGACATGAGCCGAACA
GATGTGTGTCAGGGGAGCCTGGGTAACTGCTGGTTTCTCGCGGCCGCTGCCTCCCTCACCCTGT
ACCCCCGGCTCCTGTGCCGGGTGGTCCCCCCGGGTCAGGGTTTCCAAGATGGCTACGCAGGTGT
CTTCCACTTCCAGCTCTGGCAGTTTGGACACTGGGTGGACGTCGTGGTGGACGACAGGCTGCCT
GTGCGTGAGGGGAAGCTGGTGTTCGTGCGCTCGGCTCAGCGGAACGAGTTCTGGGCCCCGCTTC
TGGAAAAGGCCTATGCTAAGCTCCACGGCTCCTACGAGGTGATGCGAGGCGGCCACATGAATGA
GGCTTTCGTGGACTTCACAGGCGGCGTGGGCGAGGTGCTCTACCTGAGGCAAAACGCCTCTGGC
CTCTTCGCCGCCCTGCGCCACGCCCTGGCCAAGGAGTCCCTCGTGGGTGCCACAGCCCTGAGCG
ATCGGGGCGAGTACCGTACGGGAGACGGGCTGGTGAAAGGACACGCATATTCTGTCACAGGCAC
ACACAAGGTGTCACTGGGCTTCACTAAGCTGCGGCTGCTGCGGCTGCGGAACCCGTGGGGCCGC
GTGGAGTGGACCGGAGCCTGGAGCGACAGCTGCCCGCGCTGGGACGAGCTCCCCACAGAGTGGC
GAGATGCCTTGTTGGTGAGAAAGGAAGACGGCGAGTTCTGGATGGAGCTGCAGGACTTCCTCTG
CCACTTCGACACCGTCCAGATCTGTTCACTGAGCCCGGAGGTGCTGGGCCCCAGCCCGGCTGGA
GGCGGCTGGCACATCCACACCTTCCAAGGCCGCTGGGTGCGTGGCTTCAGCTCTGGCGGGAGCC
AGCCCGGTGCCGAAACCTTCTGGACCAACCCCCAGTTCCGGCTGACGCTGCTGGAGCCTGATGA
GGAGGATGAAGATGAGGAGGGGCCCTGGGGGGGCTGGGGGGCCACGGGGTCACGGGGCCCCACG
CAGGGGGGCCGCAATCCCAAGTGCACTGTTCTCCTGTCACTCATCCAGCGCAACCGGCGGCACC
TGAGGGCCCAGGGCCTCATGTACCTCACCGTGGGCTTCCACGTGTTCCAGATCCCGGAGGAGTT
GCTGGGCCTGTGGGACTCCCCGCGCAGCCGCGCGCTCCTGCCGAGCCTGCTGCGCGCTGACCGC
TCGCCCTTCTGCGCCCGCCGCGACGTAAGCCGCCGCTGCCGGCTGCGCCCCGGCCACTACCTGG
TGGTGCCCAGCACCGCCCGTGCCGGCGACGAGGCCGACTTCACGCTGCGTGTCTTCTCAGAGCG
CCGCCACACCGCCATGGAGATTGATGACGTGATCAGCGCGGACCTTCATGCCCTCATGGTCCCC
TACATTCCCCTGGAGCTGGGATTGGAGCAGCTGTTCCAGGAGCTGGCAGGAGAGGAGGAAGAAC
TCCGTGCGCCTCAACTCCAGACCTTGCTAAGCATTGCCTTGGAGCCTGCCAGGGCCCATGCCTG
GACCCCTAGAGAGATCGGGCTCAGGACCTGTGAGCAGCTGCTGCGGTGCTTTGGGCATGGGCGA
AGCCTGGCCCTGTACCACTTCCAGCAGCTCTGGGGCCACCTCCTGGAGTGGCAGGCCACATTTG
ACAAATTCGACGAGGATGCCTCTGGAACCATGAACTCCTACGAGCTGAGGCTGGCCTTGAACGC
AGCAGGCTTCCACCTGAACAACCAGCTGACGCAGGCCCTCACGAGCCGCTACCGGGACAGCCGT
CTGCGTGTGGACTTTGAGCGCTTTGTGTCCTGTATGGCCCAGCTTCTCTGCCTCTTCCGTGAGT
ACCATCACTGGCCCAGGCGGGACAGAGGGCCGACGTCACCACAGCAGGGGGACCAGGGAGGTGG
GCGCTCACCCCACCCTTCTCTGCCCAGGCCACTGCAGCCAGCACCTGGACGGGGGCGAGGGAGT
CATCTGCCTGACCCACAGACAGTGGATGGAGGTGGCCACCTTCTCCTAGCATCTCAGCACGGAG
CACCTGCAGCTGGAGGCAGGAGAGCTGCTGGGAGCCCTGTCCTTCCCGCCTCCCAGCCTGGGCC
AGGATTTATGCCACAGGGAGGGGCTGAGGCTTCAGCATCAAGCAGTGGGTCAGAGCCTGGCCGT
AGGCGCCAGCCTGCCTGGAGTTGATTTCTGGCCCCACCACGCACCCGCTGGGTGACACTGAGCA
GGGCACTGTGCCTCTGGGTTTCGCTCTCCTCACCTGTAAGCGGGCATGGTAACAGCACGTTTCT
TGGGCGGGCCATATACCCTTGGCGGGTTCCCAATAGCTTGCTCACTTTCACACACTCGTGGGAA
TGGGCATCATGGCTCCCCCACGCCCCCACCTCCCTCCGGGTACAGGTGCTCTATTGTCACTCTC
CTAAGTGGAGAAAGAGGAGGAGAAAAGAGGAGACTCGAGGAATCCTTAAAAATATTACATGTTT
TATTATCCTGTCCCCAGAAGGGTGGTTTATCCAGAAACCAAGAAAAAAAAAAAAAAAAATA

hide sequence

RefSeq Acc Id:

XM_021094346 ⟹ XP_020950005

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	6	47,565,917 - 47,579,278 (-)	NCBI

Sequence:

show sequence

GAAGAGACGAGAGAGAAGATGAGGCCAAGATGGAGGAGAGAGATAGGGCGGCAGGCAGAGTGAG
AAACTGTCAGATGGAGACCCAGGGCTACAGTAAAGACACCTCCCTGCCCTCCTCTGCCCCACAG
GGGGAGGCTCAGAGGGACAAGCTGCAGAGATGTGCCTCCCACACTGACCTCCTTCTAGGCACTC
CCACATGGCAGCCAGTCCTCCTTCAGCTCTGCCCACCTTCCCTCCTGCTGCTGGCCAAGCCCAT
TAAGCTACCGCCCTGGCCACAACTGAAGGCCCCACGCCCTGGGGAGGAAAGCGCTGAAGAGGCG
TCCTTGCTCCCCAGCACCCCAAACCATCAATTAGTATTAACGAGGGAGGATTCCTCACTGCCTA
AAGACCCCCATCTGGACTCAGGGGGAGCAGAGGCCCCACCCCCGTGACTCAGGCACTTAAAGGG
CCTGGAGCCAGCCTGGGAGCCCACAAAGGGTCCGGATGGCGTGTGGCAGCAGGAGAATCACCAT
CCAGCTGGTGAACGAGGAGGCAGAGCCCGGAACCAAGGGCCCAAAGCCTTTTCGGGGCCAGAGC
TACAGAGCAATCCAAGCAGCCTGCCTGGATGAGGGCATCCTGTTCCGAGATCCCTACTTCCCTG
CTGGCCCTGATGCCCTTGGCTATGACCAGCTGGGGCCGGACTCCGAGAAGGCCAAAGGGGTGGA
ATGGAAGAGGCCCCATGAGTTCTGTGCTGAACCCCAGTTCATCTGTGAGGACATGAGCCGAACA
GATGTGTGTCAGGGGAGCCTGGGTAACTGCTGGTTTCTCGCGGCCGCTGCCTCCCTCACCCTGT
ACCCCCGGCTCCTGTGCCGGGTGGTCCCCCCGGGTCAGGGTTTCCAAGATGGCTACGCAGGTGT
CTTCCACTTCCAGCTCTGGCAGTTTGGACACTGGGTGGACGTCGTGGTGGACGACAGGCTGCCT
GTGCGTGAGGGGAAGCTGGTGTTCGTGCGCTCGGCTCAGCGGAACGAGTTCTGGGCCCCGCTTC
TGGAAAAGGCCTATGCTAAGCTCCACGGCTCCTACGAGGTGATGCGAGGCGGCCACATGAATGA
GGCTTTCGTGGACTTCACAGGCGGCGTGGGCGAGGTGCTCTACCTGAGGCAAAACGCCTCTGGC
CTCTTCGCCGCCCTGCGCCACGCCCTGGCCAAGGAGTCCCTCGTGGGTGCCACAGCCCTGAGCG
ATCGGGGCGAGTACCGTACGGGAGACGGGCTGGTGAAAGGACACGCATATTCTGTCACAGGCAC
ACACAAGGTGTCACTGGGCTTCACTAAGCTGCGGCTGCTGCGGCTGCGGAACCCGTGGGGCCGC
GTGGAGTGGACCGGAGCCTGGAGCGACAGCTGCCCGCGCTGGGACGAGCTCCCCACAGAGTGGC
GAGATGCCTTGTTGGTGAGAAAGGAAGACGGCGAGTTCTGGATGGAGCTGCAGGACTTCCTCTG
CCACTTCGACACCGTCCAGATCTGTTCACTGAGCCCGGAGGTGCTGGGCCCCAGCCCGGCTGGA
GGCGGCTGGCACATCCACACCTTCCAAGGCCGCTGGGTGCGTGGCTTCAGCTCTGGCGGGAGCC
AGCCCGGTGCCGAAACCTTCTGGACCAACCCCCAGTTCCGGCTGACGCTGCTGGAGCCTGATGA
GGAGGATGAAGATGAGGAGGGGCCCTGGGGGGGCTGGGGGGCCACGGGGTCACGGGGCCCCACG
CAGGGGGGCCGCAATCCCAAGTGCACTGTTCTCCTGTCACTCATCCAGCGCAACCGGCGGCACC
TGAGGGCCCAGGGCCTCATGTACCTCACCGTGGGCTTCCACGTGTTCCAGATCCCGGAGGAGTT
GCTGGGCCTGTGGGACTCCCCGCGCAGCCGCGCGCTCCTGCCGAGCCTGCTGCGCGCTGACCGC
TCGCCCTTCTGCGCCCGCCGCGACGTAAGCCGCCGCTGCCGGCTGCGCCCCGGCCACTACCTGG
TGGTGCCCAGCACCGCCCGTGCCGGCGACGAGGCCGACTTCACGCTGCGTGTCTTCTCAGAGCG
CCGCCACACCGCCATGGAGATTGATGACGTGATCAGCGCGGACCTTCATGCCCTCATGGTCCCC
TACATTCCCCTGGAGCTGGGATTGGAGCAGCTGTTCCAGGAGCTGGCAGGAGAGGAGGAAGAAC
TCCGTGCGCCTCAACTCCAGACCTTGCTAAGCATTGCCTTGGAGCCTGCCAGGGCCCATGCCTG
GACCCCTAGAGAGATCGGGCTCAGGACCTGTGAGCAGCTGCTGCGGTGCTTTGGGCATGGGCGA
AGCCTGGCCCTGTACCACTTCCAGCAGCTCTGGGGCCACCTCCTGGAGTGGCAGGCCACATTTG
ACAAATTCGACGAGGATGCCTCTGGAACCATGAACTCCTACGAGCTGAGGCTGGCCTTGAACGC
AGCAGGCTTCCACCTGAACAACCAGCTGACGCAGGCCCTCACGAGCCGCTACCGGGACAGCCGT
CTGCGTGTGGACTTTGAGCGCTTTGTGTCCTGTATGGCCCAGCTTCTCTGCCTCTTCCGCCACT
GCAGCCAGCACCTGGACGGGGGCGAGGGAGTCATCTGCCTGACCCACAGACAGGTGAGCCTAGA
CTGGGGGATGGGGGCGCTGGAGTGCCGGAGTCCCCTGCCTCACGCCTCCTGTCTTCTGTCACCC
AGTGGATGGAGGTGGCCACCTTCTCCTAGCATCTCAGCACGGAGCACCTGCAGCTGGAGGCAGG
AGAGCTGCTGGGAGCCCTGTCCTTCCCGCCTCCCAGCCTGGGCCAGGATTTATGCCACAGGGAG
GGGCTGAGGCTTCAGCATCAAGCAGTGGGTCAGAGCCTGGCCGTAGGCGCCAGCCTGCCTGGAG
TTGATTTCTGGCCCCACCACGCACCCGCTGGGTGACACTGAGCAGGGCACTGTGCCTCTGGGTT
TCGCTCTCCTCACCTGTAAGCGGGCATGGTAACAGCACGTTTCTTGGGCGGGCCATATACCCTT
GGCGGGTTCCCAATAGCTTGCTCACTTTCACACACTCGTGGGAATGGGCATCATGGCTCCCCCA
CGCCCCCACCTCCCTCCGGGTACAGGTGCTCTATTGTCACTCTCCTAAGTGGAGAAAGAGGAGG
AGAAAAGAGGAGACTCGAGGAATCCTTAAAAATATTACATGTTTTATTATCCTGTCCCCAGAAG
GGTGGTTTATCCAGAAACCAAGAAAAAAAAAAAAAAAAATA

hide sequence

RefSeq Acc Id:

XM_021094347 ⟹ XP_020950006

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	6	47,565,917 - 47,578,657 (-)	NCBI

Sequence:

show sequence

CGAGATCCCTACTTCCCTGCTGGCCCTGATGCCCTTGGCTATGACCAGCTGGGGCCGGACTCCG
AGAAGGCCAAAGGGGTGGAATGGAAGAGGCCCCATGTAATGAGTTCTGTGCTGAACCCCAGTTC
ATCTGTGAGGACATGAGCCGAACAGATGTGTGTCAGGGGAGCCTGGGTAACTGCTGGTTTCTCG
CGGCCGCTGCCTCCCTCACCCTGTACCCCCGGCTCCTGTGCCGGGTGGTCCCCCCGGGTCAGGG
TTTCCAAGATGGCTACGCAGGTGTCTTCCACTTCCAGCTCTGGCAGTTTGGACACTGGGTGGAC
GTCGTGGTGGACGACAGGCTGCCTGTGCGTGAGGGGAAGCTGGTGTTCGTGCGCTCGGCTCAGC
GGAACGAGTTCTGGGCCCCGCTTCTGGAAAAGGCCTATGCTAAGCTCCACGGCTCCTACGAGGT
GATGCGAGGCGGCCACATGAATGAGGCTTTCGTGGACTTCACAGGCGGCGTGGGCGAGGTGCTC
TACCTGAGGCAAAACGCCTCTGGCCTCTTCGCCGCCCTGCGCCACGCCCTGGCCAAGGAGTCCC
TCGTGGGTGCCACAGCCCTGAGCGATCGGGGCGAGTACCGTACGGGAGACGGGCTGGTGAAAGG
ACACGCATATTCTGTCACAGGCACACACAAGGTGTCACTGGGCTTCACTAAGCTGCGGCTGCTG
CGGCTGCGGAACCCGTGGGGCCGCGTGGAGTGGACCGGAGCCTGGAGCGACAGCTGCCCGCGCT
GGGACGAGCTCCCCACAGAGTGGCGAGATGCCTTGTTGGTGAGAAAGGAAGACGGCGAGTTCTG
GATGGAGCTGCAGGACTTCCTCTGCCACTTCGACACCGTCCAGATCTGTTCACTGAGCCCGGAG
GTGCTGGGCCCCAGCCCGGCTGGAGGCGGCTGGCACATCCACACCTTCCAAGGCCGCTGGGTGC
GTGGCTTCAGCTCTGGCGGGAGCCAGCCCGGTGCCGAAACCTTCTGGACCAACCCCCAGTTCCG
GCTGACGCTGCTGGAGCCTGATGAGGAGGATGAAGATGAGGAGGGGCCCTGGGGGGGCTGGGGG
GCCACGGGGTCACGGGGCCCCACGCAGGGGGGCCGCAATCCCAAGTGCACTGTTCTCCTGTCAC
TCATCCAGCGCAACCGGCGGCACCTGAGGGCCCAGGGCCTCATGTACCTCACCGTGGGCTTCCA
CGTGTTCCAGATCCCGGAGGAGTTGCTGGGCCTGTGGGACTCCCCGCGCAGCCGCGCGCTCCTG
CCGAGCCTGCTGCGCGCTGACCGCTCGCCCTTCTGCGCCCGCCGCGACGTAAGCCGCCGCTGCC
GGCTGCGCCCCGGCCACTACCTGGTGGTGCCCAGCACCGCCCGTGCCGGCGACGAGGCCGACTT
CACGCTGCGTGTCTTCTCAGAGCGCCGCCACACCGCCATGGAGATTGATGACGTGATCAGCGCG
GACCTTCATGCCCTCATGGTCCCCTACATTCCCCTGGAGCTGGGATTGGAGCAGCTGTTCCAGG
AGCTGGCAGGAGAGGAGGAAGAACTCCGTGCGCCTCAACTCCAGACCTTGCTAAGCATTGCCTT
GGAGCCTGCCAGGGCCCATGCCTGGACCCCTAGAGAGATCGGGCTCAGGACCTGTGAGCAGCTG
CTGCGGTGCTTTGGGCATGGGCGAAGCCTGGCCCTGTACCACTTCCAGCAGCTCTGGGGCCACC
TCCTGGAGTGGCAGGCCACATTTGACAAATTCGACGAGGATGCCTCTGGAACCATGAACTCCTA
CGAGCTGAGGCTGGCCTTGAACGCAGCAGGCTTCCACCTGAACAACCAGCTGACGCAGGCCCTC
ACGAGCCGCTACCGGGACAGCCGTCTGCGTGTGGACTTTGAGCGCTTTGTGTCCTGTATGGCCC
AGCTTCTCTGCCTCTTCCGTGAGTACCATCACTGGCCCAGGCGGGACAGAGGGCCGACGTCACC
ACAGCAGGGGGACCAGGGAGGTGGGCGCTCACCCCACCCTTCTCTGCCCAGGCCACTGCAGCCA
GCACCTGGACGGGGGCGAGGGAGTCATCTGCCTGACCCACAGACAGTGGATGGAGGTGGCCACC
TTCTCCTAGCATCTCAGCACGGAGCACCTGCAGCTGGAGGCAGGAGAGCTGCTGGGAGCCCTGT
CCTTCCCGCCTCCCAGCCTGGGCCAGGATTTATGCCACAGGGAGGGGCTGAGGCTTCAGCATCA
AGCAGTGGGTCAGAGCCTGGCCGTAGGCGCCAGCCTGCCTGGAGTTGATTTCTGGCCCCACCAC
GCACCCGCTGGGTGACACTGAGCAGGGCACTGTGCCTCTGGGTTTCGCTCTCCTCACCTGTAAG
CGGGCATGGTAACAGCACGTTTCTTGGGCGGGCCATATACCCTTGGCGGGTTCCCAATAGCTTG
CTCACTTTCACACACTCGTGGGAATGGGCATCATGGCTCCCCCACGCCCCCACCTCCCTCCGGG
TACAGGTGCTCTATTGTCACTCTCCTAAGTGGAGAAAGAGGAGGAGAAAAGAGGAGACTCGAGG
AATCCTTAAAAATATTACATGTTTTATTATCCTGTCCCCAGAAGGGTGGTTTATCCAGAAACCA
AGAAAAAAAAAAAAAAAAATA

hide sequence

RefSeq Acc Id:

XR_002344647

Type:

NON-CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	6	47,566,751 - 47,579,278 (-)	NCBI

Sequence:

show sequence

GAAGAGACGAGAGAGAAGATGAGGCCAAGATGGAGGAGAGAGATAGGGCGGCAGGCAGAGTGAG
AAACTGTCAGATGGAGACCCAGGGCTACAGTAAAGACACCTCCCTGCCCTCCTCTGCCCCACAG
GGGGAGGCTCAGAGGGACAAGCTGCAGAGATGTGCCTCCCACACTGACCTCCTTCTAGGCACTC
CCACATGGCAGCCAGTCCTCCTTCAGCTCTGCCCACCTTCCCTCCTGCTGCTGGCCAAGCCCAT
TAAGCTACCGCCCTGGCCACAACTGAAGGCCCCACGCCCTGGGGAGGAAAGCGCTGAAGAGGCG
TCCTTGCTCCCCAGCACCCCAAACCATCAATTAGTATTAACGAGGGAGGATTCCTCACTGCCTA
AAGACCCCCATCTGGACTCAGGGGGAGCAGAGGCCCCACCCCCGTGACTCAGGCACTTAAAGGG
CCTGGAGCCAGCCTGGGAGCCCACAAAGGGTCCGGATGGCGTGTGGCAGCAGGAGAATCACCAT
CCAGCTGGTGAACGAGGAGGCAGAGCCCGGAACCAAGGGCCCAAAGCCTTTTCGGGGCCAGAGC
TACAGAGCAATCCAAGCAGCCTGCCTGGATGAGGGCATCCTGTTCCGAGATCCCTACTTCCCTG
CTGGCCCTGATGCCCTTGGCTATGACCAGCTGGGGCCGGACTCCGAGAAGGCCAAAGGGGTGGA
ATGGAAGAGGCCCCATGAGTTCTGTGCTGAACCCCAGTTCATCTGTGAGGACATGAGCCGAACA
GATGTGTGTCAGGGGAGCCTGGGTAACTGCTGGTTTCTCGCGGCCGCTGCCTCCCTCACCCTGT
ACCCCCGGCTCCTGTGCCGGGTGGTCCCCCCGGGTCAGGGTTTCCAAGATGGCTACGCAGGTGT
CTTCCACTTCCAGCTCTGGCAGTTTGGACACTGGGTGGACGTCGTGGTGGACGACAGGCTGCCT
GTGCGTGAGGGGAAGCTGGTGTTCGTGCGCTCGGCTCAGCGGAACGAGTTCTGGGCCCCGCTTC
TGGAAAAGGCCTATGCTAAGCTCCACGGCTCCTACGAGGTGATGCGAGGCGGCCACATGAATGA
GGCTTTCGTGGACTTCACAGGCGGCGTGGGCGAGGTGCTCTACCTGAGGCAAAACGCCTCTGGC
CTCTTCGCCGCCCTGCGCCACGCCCTGGCCAAGGAGTCCCTCGTGGGTGCCACAGCCCTGAGCG
ATCGGGGCGAGTACCGTACGGGAGACGGGCTGGTGAAAGGACACGCATATTCTGTCACAGGCAC
ACACAAGGTGTCACTGGGCTTCACTAAGCTGCGGCTGCTGCGGCTGCGGAACCCGTGGGGCCGC
GTGGAGTGGACCGGAGCCTGGAGCGACAGCTGCCCGCGCTGGGACGAGCTCCCCACAGAGTGGC
GAGATGCCTTGTTGGTGAGAAAGGAAGACGGCGAGTTCTGGATGGAGCTGCAGGACTTCCTCTG
CCACTTCGACACCGTCCAGATCTGTTCACTGAGCCCGGAGGTGCTGGGCCCCAGCCCGGCTGGA
GGCGGCTGGCACATCCACACCTTCCAAGGCCGCTGGGTGCGTGGCTTCAGCTCTGGCGGGAGCC
AGCCCGGTGCCGAAACCTTCTGGACCAACCCCCAGTTCCGGCTGACGCTGCTGGAGCCTGATGA
GGAGGATGAAGATGAGGAGGGGCCCTGGGGGGGCTGGGGGGCCACGGGGTCACGGGGCCCCACG
CAGGGGGGCCGCAATCCCAAGTGCACTGTTCTCCTGTCACTCATCCAGCGCAACCGGCGGCACC
TGAGGGCCCAGGGCCTCATGTACCTCACCGTGGGCTTCCACGTGTTCCAGATCCCGGAGGAGTT
GCTGGGCCTGTGGGACTCCCCGCGCAGCCGCGCGCTCCTGCCGAGCCTGCTGCGCGCTGACCGC
TCGCCCTTCTGCGCCCGCCGCGACGTAAGCCGCCGCTGCCGGCTGCGCCCCGGCCACTACCTGG
TGGTGCCCAGCACCGCCCGTGCCGGCGACGAGGCCGACTTCACGCTGCGTGTCTTCTCAGAGCG
CCGCCACACCGCCATGGAGATTGATGACGTGATCAGCGCGGACCTTCATGCCCTCATGGTCCCC
TACATTCCCCTGGAGCTGGGATTGGAGCAGCTGTTCCAGGAGCTGGCAGGAGAGGAGGAAGAAC
TCCGTGCGCCTCAACTCCAGACCTTGCTAAGCATTGCCTTGGAGCCTGCATGGGCGAAGCCTGG
CCCTGTACCACTTCCAGCAGCTCTGGGGCCACCTCCTGGAGTGGCAGGCCACATTTGACAAATT
CGACGAGGATGCCTCTGGAACCATGAACTCCTACGAGCTGAGGCTGGCCTTGAACGCAGCAGGC
TTCCACCTGAACAACCAGCTGACGCAGGCCCTCACGAGCCGCTACCGGGACAGCCGTCTGCGTG
T

hide sequence

Protein Sequences


Protein RefSeqs	XP_003481895	(Get FASTA)	NCBI Sequence Viewer
	XP_020950004	(Get FASTA)	NCBI Sequence Viewer
	XP_020950005	(Get FASTA)	NCBI Sequence Viewer
	XP_020950006	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000003209.3
	ENSSSCP00000075058
	ENSSSCP00000075058.1
	ENSSSCP00055044555.1
	ENSSSCP00055044647.1

RefSeq Acc Id:	XP_020950005 ⟸ XM_021094346
- Peptide Label:	isoform X2
- UniProtKB:	A0A8D1S8C4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MACGSRRITIQLVNEEAEPGTKGPKPFRGQSYRAIQAACLDEGILFRDPYFPAGPDALGYDQLG PDSEKAKGVEWKRPHEFCAEPQFICEDMSRTDVCQGSLGNCWFLAAAASLTLYPRLLCRVVPPG QGFQDGYAGVFHFQLWQFGHWVDVVVDDRLPVREGKLVFVRSAQRNEFWAPLLEKAYAKLHGSY EVMRGGHMNEAFVDFTGGVGEVLYLRQNASGLFAALRHALAKESLVGATALSDRGEYRTGDGLV KGHAYSVTGTHKVSLGFTKLRLLRLRNPWGRVEWTGAWSDSCPRWDELPTEWRDALLVRKEDGE FWMELQDFLCHFDTVQICSLSPEVLGPSPAGGGWHIHTFQGRWVRGFSSGGSQPGAETFWTNPQ FRLTLLEPDEEDEDEEGPWGGWGATGSRGPTQGGRNPKCTVLLSLIQRNRRHLRAQGLMYLTVG FHVFQIPEELLGLWDSPRSRALLPSLLRADRSPFCARRDVSRRCRLRPGHYLVVPSTARAGDEA DFTLRVFSERRHTAMEIDDVISADLHALMVPYIPLELGLEQLFQELAGEEEELRAPQLQTLLSI ALEPARAHAWTPREIGLRTCEQLLRCFGHGRSLALYHFQQLWGHLLEWQATFDKFDEDASGTMN SYELRLALNAAGFHLNNQLTQALTSRYRDSRLRVDFERFVSCMAQLLCLFRHCSQHLDGGEGVI CLTHRQVSLDWGMGALECRSPLPHASCLLSPSGWRWPPSPSISARSTCSWRQESCWEPCPSRLP AWARIYATGRG hide sequence

RefSeq Acc Id:	XP_020950004 ⟸ XM_021094345
- Peptide Label:	isoform X1
- UniProtKB:	A0A8D1S3I3 (UniProtKB/TrEMBL), F1RI38 (UniProtKB/TrEMBL)
- Sequence:	show sequence MACGSRRITIQLVNEEAEPGTKGPKPFRGQSYRAIQAACLDEGILFRDPYFPAGPDALGYDQLG PDSEKAKGVEWKRPHEFCAEPQFICEDMSRTDVCQGSLGNCWFLAAAASLTLYPRLLCRVVPPG QGFQDGYAGVFHFQLWQFGHWVDVVVDDRLPVREGKLVFVRSAQRNEFWAPLLEKAYAKLHGSY EVMRGGHMNEAFVDFTGGVGEVLYLRQNASGLFAALRHALAKESLVGATALSDRGEYRTGDGLV KGHAYSVTGTHKVSLGFTKLRLLRLRNPWGRVEWTGAWSDSCPRWDELPTEWRDALLVRKEDGE FWMELQDFLCHFDTVQICSLSPEVLGPSPAGGGWHIHTFQGRWVRGFSSGGSQPGAETFWTNPQ FRLTLLEPDEEDEDEEGPWGGWGATGSRGPTQGGRNPKCTVLLSLIQRNRRHLRAQGLMYLTVG FHVFQIPEELLGLWDSPRSRALLPSLLRADRSPFCARRDVSRRCRLRPGHYLVVPSTARAGDEA DFTLRVFSERRHTAMEIDDVISADLHALMVPYIPLELGLEQLFQELAGEEEELRAPQLQTLLSI ALEPARAHAWTPREIGLRTCEQLLRCFGHGRSLALYHFQQLWGHLLEWQATFDKFDEDASGTMN SYELRLALNAAGFHLNNQLTQALTSRYRDSRLRVDFERFVSCMAQLLCLFREYHHWPRRDRGPT SPQQGDQGGGRSPHPSLPRPLQPAPGRGRGSHLPDPQTVDGGGHLLLASQHGAPAAGGRRAAGS PVLPASQPGPGFMPQGGAEASASSSGSEPGRRRQPAWS hide sequence

RefSeq Acc Id:	XP_020950006 ⟸ XM_021094347
- Peptide Label:	isoform X3
- UniProtKB:	A0A8D1S3I3 (UniProtKB/TrEMBL), F1RI38 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEEAPCNEFCAEPQFICEDMSRTDVCQGSLGNCWFLAAAASLTLYPRLLCRVVPPGQGFQDGYA GVFHFQLWQFGHWVDVVVDDRLPVREGKLVFVRSAQRNEFWAPLLEKAYAKLHGSYEVMRGGHM NEAFVDFTGGVGEVLYLRQNASGLFAALRHALAKESLVGATALSDRGEYRTGDGLVKGHAYSVT GTHKVSLGFTKLRLLRLRNPWGRVEWTGAWSDSCPRWDELPTEWRDALLVRKEDGEFWMELQDF LCHFDTVQICSLSPEVLGPSPAGGGWHIHTFQGRWVRGFSSGGSQPGAETFWTNPQFRLTLLEP DEEDEDEEGPWGGWGATGSRGPTQGGRNPKCTVLLSLIQRNRRHLRAQGLMYLTVGFHVFQIPE ELLGLWDSPRSRALLPSLLRADRSPFCARRDVSRRCRLRPGHYLVVPSTARAGDEADFTLRVFS ERRHTAMEIDDVISADLHALMVPYIPLELGLEQLFQELAGEEEELRAPQLQTLLSIALEPARAH AWTPREIGLRTCEQLLRCFGHGRSLALYHFQQLWGHLLEWQATFDKFDEDASGTMNSYELRLAL NAAGFHLNNQLTQALTSRYRDSRLRVDFERFVSCMAQLLCLFREYHHWPRRDRGPTSPQQGDQG GGRSPHPSLPRPLQPAPGRGRGSHLPDPQTVDGGGHLLLASQHGAPAAGGRRAAGSPVLPASQP GPGFMPQGGAEASASSSGSEPGRRRQPAWS hide sequence

RefSeq Acc Id:	XP_003481895 ⟸ XM_003481847
- Peptide Label:	isoform X4
- UniProtKB:	A0A8W4F714 (UniProtKB/TrEMBL), A0A8D1S3I3 (UniProtKB/TrEMBL), F1RI38 (UniProtKB/TrEMBL)
- Sequence:	show sequence MACGSRRITIQLVNEEAEPGTKGPKPFRGQSYRAIQAACLDEGILFRDPYFPAGPDALGYDQLG PDSEKAKGVEWKRPHEFCAEPQFICEDMSRTDVCQGSLGNCWFLAAAASLTLYPRLLCRVVPPG QGFQDGYAGVFHFQLWQFGHWVDVVVDDRLPVREGKLVFVRSAQRNEFWAPLLEKAYAKLHGSY EVMRGGHMNEAFVDFTGGVGEVLYLRQNASGLFAALRHALAKESLVGATALSDRGEYRTGDGLV KGHAYSVTGTHKVSLGFTKLRLLRLRNPWGRVEWTGAWSDSCPRWDELPTEWRDALLVRKEDGE FWMELQDFLCHFDTVQICSLSPEVLGPSPAGGGWHIHTFQGRWVRGFSSGGSQPGAETFWTNPQ FRLTLLEPDEEDEDEEGPWGGWGATGSRGPTQGGRNPKCTVLLSLIQRNRRHLRAQGLMYLTVG FHVFQIPEELLGLWDSPRSRALLPSLLRADRSPFCARRDVSRRCRLRPGHYLVVPSTARAGDEA DFTLRVFSERRHTAMEIDDVISADLHALMVPYIPLELGLEQLFQELAGEEEELRAPQLQTLLSI ALEPARAHAWTPREIGLRTCEQLLRCFGHGRSLALYHFQQLWGHLLEWQATFDKFDEDASGTMN SYELRLALNAAGFHLNNQLTQALTSRYRDSRLRVDFERFVSCMAQLLCLFRHCSQHLDGGEGVI CLTHRQWMEVATFS hide sequence

RefSeq Acc Id:

ENSSSCP00000003209 ⟸ ENSSSCT00000003291

RefSeq Acc Id:

ENSSSCP00000075058 ⟸ ENSSSCT00000092123

Protein Domains

Calpain catalytic EF-hand

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000002967	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00055027969	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000003291.5	UniProtKB/TrEMBL
	ENSSSCT00000092123	ENTREZGENE
	ENSSSCT00000092123.1	UniProtKB/TrEMBL
	ENSSSCT00055055813.1	UniProtKB/TrEMBL
	ENSSSCT00055055918.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.120.380	UniProtKB/TrEMBL
	Cysteine proteinases	UniProtKB/TrEMBL
	EF-hand	UniProtKB/TrEMBL
InterPro	C2_III	UniProtKB/TrEMBL
	Calpain_cysteine_protease	UniProtKB/TrEMBL
	Calpain_domain_III	UniProtKB/TrEMBL
	Calpain_III	UniProtKB/TrEMBL
	Calpain_III_sf	UniProtKB/TrEMBL
	EF-hand-dom_pair	UniProtKB/TrEMBL
	EF_Hand_1_Ca_BS	UniProtKB/TrEMBL
	EF_hand_dom	UniProtKB/TrEMBL
	Papain-like_cys_pep_sf	UniProtKB/TrEMBL
	Pept_cys_AS	UniProtKB/TrEMBL
	Peptidase_C2_calpain_cat	UniProtKB/TrEMBL
NCBI Gene	CAPN12	ENTREZGENE
PANTHER	CALPAIN	UniProtKB/TrEMBL
	PTHR10183:SF280	UniProtKB/TrEMBL
Pfam	Calpain_III	UniProtKB/TrEMBL
	Peptidase_C2	UniProtKB/TrEMBL
PRINTS	CALPAIN	UniProtKB/TrEMBL
PROSITE	CALPAIN_CAT	UniProtKB/TrEMBL
	EF_HAND_1	UniProtKB/TrEMBL
	EF_HAND_2	UniProtKB/TrEMBL
	THIOL_PROTEASE_CYS	UniProtKB/TrEMBL
SMART	calpain_III	UniProtKB/TrEMBL
	CysPc	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47473	UniProtKB/TrEMBL
	SSF49758	UniProtKB/TrEMBL
	SSF54001	UniProtKB/TrEMBL
UniProt	A0A8D1S3I3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1S8C4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8W4F714	ENTREZGENE, UniProtKB/TrEMBL
	F1RI38	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:86172	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar