CD37 (CD37 molecule) - Rat Genome Database

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Gene: CD37 (CD37 molecule) Sus scrofa
Analyze
Symbol: CD37
Name: CD37 molecule
RGD ID: 13855201
Description: INVOLVED IN defense response to protozoan (ortholog); negative regulation of myeloid dendritic cell activation (ortholog); negative regulation of T cell proliferation (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 12 (ortholog); FOUND IN immunological synapse (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: leukocyte antigen CD37
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl654,440,727 - 54,448,188 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1654,431,413 - 54,448,195 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CD37
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl654,440,727 - 54,448,188 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1654,431,413 - 54,448,195 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CD37
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381949,335,406 - 49,340,606 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1949,335,171 - 49,343,335 (+)EnsemblGRCh38hg38GRCh38
GRCh371949,838,663 - 49,843,863 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361954,530,489 - 54,535,675 (+)NCBINCBI36Build 36hg18NCBI36
Build 341954,530,546 - 54,535,613NCBI
Celera1946,705,529 - 46,710,715 (+)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1946,215,487 - 46,220,673 (+)NCBIHuRef
CHM1_11949,840,523 - 49,845,709 (+)NCBICHM1_1
T2T-CHM13v2.01952,332,834 - 52,338,034 (+)NCBIT2T-CHM13v2.0
Cd37
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39744,883,056 - 44,888,701 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl744,883,056 - 44,888,539 (-)EnsemblGRCm39 Ensembl
GRCm38745,233,632 - 45,239,340 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl745,233,632 - 45,239,115 (-)EnsemblGRCm38mm10GRCm38
MGSCv37752,489,002 - 52,494,209 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36745,101,674 - 45,106,882 (-)NCBIMGSCv36mm8
Celera740,689,498 - 40,694,754 (-)NCBICelera
Cytogenetic Map7B3NCBI
cM Map729.2NCBI
Cd37
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81104,855,622 - 104,861,111 (-)NCBIGRCr8
mRatBN7.2195,719,171 - 95,724,662 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl195,719,190 - 95,724,648 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1101,104,579 - 101,109,734 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01109,577,250 - 109,582,405 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01102,867,647 - 102,872,802 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01101,230,470 - 101,236,061 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1101,230,533 - 101,236,065 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01102,295,444 - 102,300,935 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4195,709,961 - 95,715,116 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1195,788,071 - 95,793,227 (-)NCBI
Celera189,977,460 - 89,982,615 (-)NCBICelera
Cytogenetic Map1q22NCBI
Cd37
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555591,465,937 - 1,471,249 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555591,465,937 - 1,471,249 (-)NCBIChiLan1.0ChiLan1.0
CD37
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22055,453,311 - 55,458,523 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11957,373,489 - 57,378,483 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01946,349,845 - 46,355,294 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11955,273,914 - 55,279,562 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1955,273,914 - 55,279,562 (+)Ensemblpanpan1.1panPan2
CD37
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11107,130,553 - 107,136,602 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1107,128,996 - 107,136,081 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1106,713,852 - 106,719,859 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01107,650,867 - 107,656,876 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11107,323,776 - 107,329,780 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01106,965,941 - 106,971,950 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01107,807,087 - 107,813,087 (-)NCBIUU_Cfam_GSD_1.0
Cd37
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934921,619,176 - 21,624,634 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366643,237,597 - 3,242,806 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366643,237,747 - 3,242,824 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CD37
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1642,516,901 - 42,522,695 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl642,517,571 - 42,525,598 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607322,439,360 - 22,444,685 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cd37
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248324,837,247 - 4,841,756 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248324,837,247 - 4,842,126 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CD37
84 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 2 1
Low 9 1 3 3 3 2
Below cutoff 1 2 3 2 18 2

Sequence


RefSeq Acc Id: ENSSSCT00000047486   ⟹   ENSSSCP00000038758
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl654,440,727 - 54,448,188 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000066023   ⟹   ENSSSCP00000034751
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl654,440,727 - 54,448,188 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000071630   ⟹   ENSSSCP00000063306
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl654,441,493 - 54,447,398 (+)Ensembl
RefSeq Acc Id: XM_021094726   ⟹   XP_020950385
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1654,440,739 - 54,448,193 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021094727   ⟹   XP_020950386
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1654,431,416 - 54,448,193 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021094728   ⟹   XP_020950387
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1654,431,413 - 54,448,193 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021094729   ⟹   XP_020950388
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1654,440,732 - 54,448,195 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021094730   ⟹   XP_020950389
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1654,441,057 - 54,448,195 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020950387   ⟸   XM_021094728
- Peptide Label: isoform X3
- UniProtKB: A0A8D0ID23 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020950386   ⟸   XM_021094727
- Peptide Label: isoform X2
- UniProtKB: A0A8D1TG48 (UniProtKB/TrEMBL),   A0A5G2QF18 (UniProtKB/TrEMBL),   A0A8D0ID23 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020950388   ⟸   XM_021094729
- Peptide Label: isoform X4
- UniProtKB: A0A8D1MK22 (UniProtKB/TrEMBL),   A0A287A4D5 (UniProtKB/TrEMBL),   A0A8D0IF46 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020950385   ⟸   XM_021094726
- Peptide Label: isoform X1
- UniProtKB: A0A8D1BLL5 (UniProtKB/TrEMBL),   A0A8D0ID23 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020950389   ⟸   XM_021094730
- Peptide Label: isoform X5
- UniProtKB: A0A8D0US14 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000063306   ⟸   ENSSSCT00000071630
RefSeq Acc Id: ENSSSCP00000034751   ⟸   ENSSSCT00000066023
RefSeq Acc Id: ENSSSCP00000038758   ⟸   ENSSSCT00000047486


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000033849 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005008607 UniProtKB/TrEMBL
  ENSSSCG00015013042 UniProtKB/TrEMBL
  ENSSSCG00025043333 UniProtKB/TrEMBL
  ENSSSCG00030071811 UniProtKB/TrEMBL
  ENSSSCG00035080711 UniProtKB/TrEMBL
  ENSSSCG00040017302 UniProtKB/TrEMBL
  ENSSSCG00045013461 UniProtKB/TrEMBL
  ENSSSCG00050042667 UniProtKB/TrEMBL
  ENSSSCG00055007686 UniProtKB/TrEMBL
  ENSSSCG00060078252 UniProtKB/TrEMBL
  ENSSSCG00065057246 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000047486 ENTREZGENE
  ENSSSCT00000047486.2 UniProtKB/TrEMBL
  ENSSSCT00000066023.3 UniProtKB/TrEMBL
  ENSSSCT00000071630 ENTREZGENE
  ENSSSCT00000071630.2 UniProtKB/TrEMBL
  ENSSSCT00005013091.1 UniProtKB/TrEMBL
  ENSSSCT00005013179.1 UniProtKB/TrEMBL
  ENSSSCT00015017309.1 UniProtKB/TrEMBL
  ENSSSCT00015017381.1 UniProtKB/TrEMBL
  ENSSSCT00025058738.1 UniProtKB/TrEMBL
  ENSSSCT00025058885.1 UniProtKB/TrEMBL
  ENSSSCT00025058994.1 UniProtKB/TrEMBL
  ENSSSCT00025059122.1 UniProtKB/TrEMBL
  ENSSSCT00030100544.1 UniProtKB/TrEMBL
  ENSSSCT00030100580.1 UniProtKB/TrEMBL
  ENSSSCT00030100593.1 UniProtKB/TrEMBL
  ENSSSCT00030100623.1 UniProtKB/TrEMBL
  ENSSSCT00035110696.1 UniProtKB/TrEMBL
  ENSSSCT00035110709.1 UniProtKB/TrEMBL
  ENSSSCT00035110719.1 UniProtKB/TrEMBL
  ENSSSCT00035110741.1 UniProtKB/TrEMBL
  ENSSSCT00040023321.1 UniProtKB/TrEMBL
  ENSSSCT00040023329.1 UniProtKB/TrEMBL
  ENSSSCT00040023350.1 UniProtKB/TrEMBL
  ENSSSCT00040023385.1 UniProtKB/TrEMBL
  ENSSSCT00045022994.1 UniProtKB/TrEMBL
  ENSSSCT00045023017.1 UniProtKB/TrEMBL
  ENSSSCT00045023058.1 UniProtKB/TrEMBL
  ENSSSCT00045023079.1 UniProtKB/TrEMBL
  ENSSSCT00045023100.1 UniProtKB/TrEMBL
  ENSSSCT00050058000.1 UniProtKB/TrEMBL
  ENSSSCT00050058004.1 UniProtKB/TrEMBL
  ENSSSCT00050058009.1 UniProtKB/TrEMBL
  ENSSSCT00050058012.1 UniProtKB/TrEMBL
  ENSSSCT00055015031.1 UniProtKB/TrEMBL
  ENSSSCT00055015093.1 UniProtKB/TrEMBL
  ENSSSCT00055015152.1 UniProtKB/TrEMBL
  ENSSSCT00060107994.1 UniProtKB/TrEMBL
  ENSSSCT00060108001.1 UniProtKB/TrEMBL
  ENSSSCT00060108005.1 UniProtKB/TrEMBL
  ENSSSCT00060108012.1 UniProtKB/TrEMBL
  ENSSSCT00060108020.1 UniProtKB/TrEMBL
  ENSSSCT00065078346.1 UniProtKB/TrEMBL
  ENSSSCT00065078354.1 UniProtKB/TrEMBL
  ENSSSCT00065078361.1 UniProtKB/TrEMBL
  ENSSSCT00065078366.1 UniProtKB/TrEMBL
  ENSSSCT00065078371.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1450.10 UniProtKB/TrEMBL
InterPro Tetraspanin UniProtKB/TrEMBL
  Tetraspanin/Peripherin UniProtKB/TrEMBL
  Tetraspanin_CS UniProtKB/TrEMBL
  Tetraspanin_EC2_sf UniProtKB/TrEMBL
NCBI Gene CD37 ENTREZGENE
PANTHER LEUKOCYTE ANTIGEN CD37 UniProtKB/TrEMBL
  PTHR19282 UniProtKB/TrEMBL
Pfam Tetraspanin UniProtKB/TrEMBL
PIRSF Tetraspanin UniProtKB/TrEMBL
PRINTS TMFOUR UniProtKB/TrEMBL
PROSITE TM4_1 UniProtKB/TrEMBL
Superfamily-SCOP SSF48652 UniProtKB/TrEMBL
UniProt A0A286ZT54_PIG UniProtKB/TrEMBL
  A0A287A4D5 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QF18 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0ID23 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0IF46 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0S124_PIG UniProtKB/TrEMBL
  A0A8D0US14 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1BLL5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1BPU9_PIG UniProtKB/TrEMBL
  A0A8D1K4T5_PIG UniProtKB/TrEMBL
  A0A8D1MK22 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1TG48 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1ZF14_PIG UniProtKB/TrEMBL
VGNC ID VGNC:86411 ENTREZGENE