LOC102163838 (non-secretory ribonuclease-like) - Rat Genome Database

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Gene: LOC102163838 (non-secretory ribonuclease-like) Sus scrofa
Analyze
Symbol: LOC102163838
Name: non-secretory ribonuclease-like
RGD ID: 13851240
Description: ENCODES a protein that exhibits lipopolysaccharide binding (ortholog); INVOLVED IN antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); innate immune response (ortholog); ASSOCIATED WITH asthma (ortholog); Brain-Lung-Thyroid Syndrome (ortholog); COVID-19 (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1778,179,285 - 78,180,221 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC102163838
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1778,179,285 - 78,180,221 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
RNASE3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381420,891,385 - 20,892,348 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1420,891,385 - 20,892,348 (+)EnsemblGRCh38hg38GRCh38
GRCh371421,359,544 - 21,360,507 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361420,429,402 - 20,430,347 (+)NCBINCBI36Build 36hg18NCBI36
Build 341420,429,401 - 20,430,347NCBI
Celera141,220,428 - 1,221,373 (+)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef141,480,722 - 1,481,667 (+)NCBIHuRef
CHM1_11421,361,699 - 21,362,644 (+)NCBICHM1_1
T2T-CHM13v2.01415,088,805 - 15,089,768 (+)NCBIT2T-CHM13v2.0
Ear1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391444,056,222 - 44,057,096 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1444,056,222 - 44,112,974 (-)EnsemblGRCm39 Ensembl
GRCm381443,818,765 - 43,819,639 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1443,818,765 - 43,875,517 (-)EnsemblGRCm38mm10GRCm38
MGSCv371444,396,430 - 44,397,304 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361442,698,632 - 42,699,506 (-)NCBIMGSCv36mm8
Cytogenetic Map14C1NCBI
cM Map1422.51NCBI
Rnase3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81526,985,399 - 26,986,269 (-)NCBIGRCr8
mRatBN7.21524,511,894 - 24,512,764 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1524,511,891 - 24,512,790 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1527,283,046 - 27,283,916 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01528,238,210 - 28,239,080 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01526,491,605 - 26,492,475 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01528,216,744 - 28,217,614 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1528,216,744 - 28,217,614 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01532,053,025 - 32,053,895 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Cytogenetic Map15p14NCBI

Variants

.
Variants in LOC102163838
15 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

hemolymphoid system nervous system
High
Medium
Low 1
Below cutoff 2

Sequence


Reference Sequences
RefSeq Acc Id: XM_005658553   ⟹   XP_005658610
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1778,179,285 - 78,180,221 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005658610   ⟸   XM_005658553
- UniProtKB: A0A287AE25 (UniProtKB/TrEMBL),   A0A4X1USD3 (UniProtKB/TrEMBL),   A0A8D0QDF8 (UniProtKB/TrEMBL),   A0A8D0WUS2 (UniProtKB/TrEMBL),   A0A8D1GIP5 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Ribonuclease A-domain


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000035377 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005022353 UniProtKB/TrEMBL
  ENSSSCG00015081226 UniProtKB/TrEMBL
  ENSSSCG00025004703 UniProtKB/TrEMBL
  ENSSSCG00030041786 UniProtKB/TrEMBL
  ENSSSCG00035000280 UniProtKB/TrEMBL
  ENSSSCG00040017178 UniProtKB/TrEMBL
  ENSSSCG00045004238 UniProtKB/TrEMBL
  ENSSSCG00050003550 UniProtKB/TrEMBL
  ENSSSCG00055015604 UniProtKB/TrEMBL
  ENSSSCG00060025862 UniProtKB/TrEMBL
  ENSSSCG00065058176 UniProtKB/TrEMBL
  ENSSSCG00070019841 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000053431 ENTREZGENE
  ENSSSCT00000053431.1 UniProtKB/TrEMBL
  ENSSSCT00005035309.1 UniProtKB/TrEMBL
  ENSSSCT00015110775.1 UniProtKB/TrEMBL
  ENSSSCT00025006352.1 UniProtKB/TrEMBL
  ENSSSCT00030058109.1 UniProtKB/TrEMBL
  ENSSSCT00035000301.1 UniProtKB/TrEMBL
  ENSSSCT00040023132.1 UniProtKB/TrEMBL
  ENSSSCT00045007065.1 UniProtKB/TrEMBL
  ENSSSCT00050004747.1 UniProtKB/TrEMBL
  ENSSSCT00055030716.1 UniProtKB/TrEMBL
  ENSSSCT00060035023.1 UniProtKB/TrEMBL
  ENSSSCT00065079590.1 UniProtKB/TrEMBL
  ENSSSCT00070039306.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.130.10 UniProtKB/TrEMBL
InterPro RNaseA UniProtKB/TrEMBL
  RNaseA-like_dom_sf UniProtKB/TrEMBL
  RNaseA_AS UniProtKB/TrEMBL
  RNaseA_domain UniProtKB/TrEMBL
NCBI Gene LOC102163838 ENTREZGENE
PANTHER EOSINOPHIL CATIONIC PROTEIN UniProtKB/TrEMBL
  PTHR11437 UniProtKB/TrEMBL
Pfam RnaseA UniProtKB/TrEMBL
PRINTS RIBONUCLEASE UniProtKB/TrEMBL
PROSITE RNASE_PANCREATIC UniProtKB/TrEMBL
SMART RNAse_Pc UniProtKB/TrEMBL
Superfamily-SCOP SSF54076 UniProtKB/TrEMBL
UniProt A0A287AE25 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1USD3 ENTREZGENE
  A0A8D0QDF8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0WUS2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1GIP5 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A4X1USD3 UniProtKB/TrEMBL