TRIM7 (tripartite motif containing 7) - Rat Genome Database

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Gene: TRIM7 (tripartite motif containing 7) Sus scrofa
Analyze
Symbol: TRIM7
Name: tripartite motif containing 7
RGD ID: 13848797
Description: ENCODES a protein that exhibits metal ion binding (inferred); ubiquitin protein ligase activity (inferred); zinc ion binding (inferred); INVOLVED IN antiviral innate immune response (inferred); protein ubiquitination (inferred); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN cytoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tripartite motif-containing protein 7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl257,310,541 - 57,323,153 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1257,310,530 - 57,322,427 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
COVID-19  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
TRIM7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl257,310,541 - 57,323,153 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1257,310,530 - 57,322,427 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TRIM7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385181,193,924 - 181,205,196 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5181,193,924 - 181,205,293 (-)EnsemblGRCh38hg38GRCh38
GRCh375180,620,924 - 180,632,196 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365180,553,530 - 180,564,783 (-)NCBINCBI36Build 36hg18NCBI36
Build 345180,553,530 - 180,560,536NCBI
Celera5176,248,835 - 176,260,088 (-)NCBICelera
Cytogenetic Map5q35.3NCBI
HuRef5175,348,231 - 175,359,599 (-)NCBIHuRef
CHM1_15180,051,866 - 180,063,235 (-)NCBICHM1_1
T2T-CHM13v2.05181,753,960 - 181,778,284 (-)NCBIT2T-CHM13v2.0
Trim7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391148,716,965 - 48,742,019 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1148,716,967 - 48,743,036 (+)EnsemblGRCm39 Ensembl
GRCm381148,826,138 - 48,851,192 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1148,826,140 - 48,852,209 (+)EnsemblGRCm38mm10GRCm38
MGSCv371148,639,640 - 48,663,697 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361148,673,862 - 48,684,840 (+)NCBIMGSCv36mm8
Celera1153,394,839 - 53,432,557 (+)NCBICelera
Cytogenetic Map11B1.2NCBI
cM Map1128.8NCBI
Trim7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81033,706,614 - 33,722,609 (+)NCBIGRCr8
mRatBN7.21033,205,491 - 33,221,482 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1033,205,491 - 33,221,468 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1037,885,375 - 37,901,367 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0106,423,792 - 6,439,784 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01032,879,013 - 32,895,005 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01034,185,535 - 34,200,750 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1034,185,898 - 34,199,279 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01033,969,297 - 33,983,202 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41034,099,610 - 34,118,055 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11034,106,880 - 34,119,120 (+)NCBI
Celera1032,591,186 - 32,606,413 (+)NCBICelera
Cytogenetic Map10q21NCBI
Trim7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955530119,018 - 131,979 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955530119,088 - 128,353 (+)NCBIChiLan1.0ChiLan1.0
TRIM7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24176,217,902 - 176,228,957 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15174,382,590 - 174,393,025 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05176,420,313 - 176,431,371 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15183,671,780 - 183,682,117 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5183,673,023 - 183,682,872 (-)Ensemblpanpan1.1panPan2
TRIM7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.111393,388 - 402,124 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl11394,710 - 402,005 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha11452,051 - 462,304 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.011355,548 - 365,801 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl11355,555 - 364,165 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.111327,726 - 337,979 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.011415,305 - 425,558 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.011576,706 - 586,971 (-)NCBIUU_Cfam_GSD_1.0
Trim7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213117,887,875 - 117,896,600 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936826707,395 - 717,329 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936826707,340 - 717,041 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIM7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12382,758,322 - 82,770,201 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2382,759,558 - 82,769,252 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607514,275,833 - 14,288,603 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trim7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624958222,823 - 236,979 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624958221,582 - 234,109 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TRIM7
55 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1
Low 6 3 1 19 1
Below cutoff 2 1 3 3 2 1 3

Sequence


RefSeq Acc Id: ENSSSCT00000041143   ⟹   ENSSSCP00000039943
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl257,310,597 - 57,323,153 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000062177   ⟹   ENSSSCP00000041704
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl257,310,541 - 57,312,079 (+)Ensembl
RefSeq Acc Id: XM_021083408   ⟹   XP_020939067
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1257,310,531 - 57,322,427 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021083409   ⟹   XP_020939068
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1257,310,611 - 57,322,427 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021083410   ⟹   XP_020939069
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1257,311,498 - 57,322,427 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021083411   ⟹   XP_020939070
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1257,311,546 - 57,322,427 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021083412   ⟹   XP_020939071
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1257,310,530 - 57,315,543 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020939071   ⟸   XM_021083412
- Peptide Label: isoform X3
- UniProtKB: A0A287AD14 (UniProtKB/TrEMBL),   A0A4X1TXR5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020939067   ⟸   XM_021083408
- Peptide Label: isoform X1
- UniProtKB: A0A287A7M1 (UniProtKB/TrEMBL),   A0A4X1TXR0 (UniProtKB/TrEMBL),   A0A8D1U872 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020939068   ⟸   XM_021083409
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020939069   ⟸   XM_021083410
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020939070   ⟸   XM_021083411
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSSSCP00000039943   ⟸   ENSSSCT00000041143
RefSeq Acc Id: ENSSSCP00000041704   ⟸   ENSSSCT00000062177
Protein Domains
B box-type   B30.2/SPRY   RING-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000037835 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015070177 UniProtKB/TrEMBL
  ENSSSCG00025061032 UniProtKB/TrEMBL
  ENSSSCG00030032592 UniProtKB/TrEMBL
  ENSSSCG00035077833 UniProtKB/TrEMBL
  ENSSSCG00040032330 UniProtKB/TrEMBL
  ENSSSCG00045005770 UniProtKB/TrEMBL
  ENSSSCG00050070609 UniProtKB/TrEMBL
  ENSSSCG00055021936 UniProtKB/TrEMBL
  ENSSSCG00060003768 UniProtKB/TrEMBL
  ENSSSCG00065061021 UniProtKB/TrEMBL
  ENSSSCG00070013695 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000041143 ENTREZGENE
  ENSSSCT00000041143.3 UniProtKB/TrEMBL
  ENSSSCT00000062177.3 UniProtKB/TrEMBL
  ENSSSCT00015094281.1 UniProtKB/TrEMBL
  ENSSSCT00015094450.1 UniProtKB/TrEMBL
  ENSSSCT00025083605.1 UniProtKB/TrEMBL
  ENSSSCT00025083781.1 UniProtKB/TrEMBL
  ENSSSCT00030045047.1 UniProtKB/TrEMBL
  ENSSSCT00030045074.1 UniProtKB/TrEMBL
  ENSSSCT00035106218.1 UniProtKB/TrEMBL
  ENSSSCT00035106253.1 UniProtKB/TrEMBL
  ENSSSCT00040043504.1 UniProtKB/TrEMBL
  ENSSSCT00040043559.1 UniProtKB/TrEMBL
  ENSSSCT00045009629.1 UniProtKB/TrEMBL
  ENSSSCT00045009646.1 UniProtKB/TrEMBL
  ENSSSCT00045009680.1 UniProtKB/TrEMBL
  ENSSSCT00050096278.1 UniProtKB/TrEMBL
  ENSSSCT00050096284.1 UniProtKB/TrEMBL
  ENSSSCT00055043109.1 UniProtKB/TrEMBL
  ENSSSCT00060004680.1 UniProtKB/TrEMBL
  ENSSSCT00060004687.1 UniProtKB/TrEMBL
  ENSSSCT00060004698.1 UniProtKB/TrEMBL
  ENSSSCT00065083597.1 UniProtKB/TrEMBL
  ENSSSCT00065083602.1 UniProtKB/TrEMBL
  ENSSSCT00070026719.1 UniProtKB/TrEMBL
  ENSSSCT00070026724.1 UniProtKB/TrEMBL
  ENSSSCT00070026730.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.920 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro B30.2/SPRY UniProtKB/TrEMBL
  B30.2/SPRY_sf UniProtKB/TrEMBL
  Butyrophylin_SPRY UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/TrEMBL
  PRY UniProtKB/TrEMBL
  SPRY_dom UniProtKB/TrEMBL
  Znf-RING_euk UniProtKB/TrEMBL
  Znf_B-box UniProtKB/TrEMBL
  Znf_B-box_chordata UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
NCBI Gene TRIM7 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIM UniProtKB/TrEMBL
  E3 UBIQUITIN-PROTEIN LIGASE TRIM7 UniProtKB/TrEMBL
Pfam PRY UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
  zf-B_box UniProtKB/TrEMBL
  zf-RING_UBOX UniProtKB/TrEMBL
PRINTS BBOXZNFINGER UniProtKB/TrEMBL
  BUTYPHLNCDUF UniProtKB/TrEMBL
PROSITE B302_SPRY UniProtKB/TrEMBL
  ZF_BBOX UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
SMART BBOX UniProtKB/TrEMBL
  PRY UniProtKB/TrEMBL
  RING UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
Superfamily-SCOP B-box zinc-binding domain UniProtKB/TrEMBL
  RING/U-box UniProtKB/TrEMBL
  SSF49899 UniProtKB/TrEMBL
UniProt A0A287A7M1 ENTREZGENE, UniProtKB/TrEMBL
  A0A287AD14 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TXR0 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TXR5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1U872 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:94430 ENTREZGENE