HEATR9 (HEAT repeat containing 9)

Gene: HEATR9 (HEAT repeat containing 9) Sus scrofa

Analyze

Symbol:

HEATR9

Name:

HEAT repeat containing 9

RGD ID:

13848439

Description:

INVOLVED IN hematopoietic progenitor cell differentiation (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

C12H17orf66; protein HEATR9

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	HEATR9 (HEAT repeat containing 9)	HGNC	Ensembl, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Heatr9 (HEAT repeat containing 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Heatr9 (HEAT repeat containing 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Heatr9 (HEAT repeat containing 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	HEATR9 (HEAT repeat containing 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	HEATR9 (HEAT repeat containing 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Heatr9 (HEAT repeat containing 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	HEATR9 (HEAT repeat containing 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Heatr9 (HEAT repeat containing 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	39,663,000 - 39,679,632 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	39,662,786 - 39,679,788 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	41,232,295 - 41,251,162 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

hematopoietic progenitor cell differentiation (IEA,ISO)

Molecular Function

protein binding (ISO)

References

Genomics

Comparative Map Data

HEATR9
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	39,663,000 - 39,679,632 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	39,662,786 - 39,679,788 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	41,232,295 - 41,251,162 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

HEATR9
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	35,854,955 - 35,868,891 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	35,854,946 - 35,868,891 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	34,181,959 - 34,195,895 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	31,206,073 - 31,220,008 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	17	31,092,173 - 31,105,452 (-)	NCBI		Celera
Cytogenetic Map	17	q12	NCBI
HuRef	17	30,367,042 - 30,380,908 (-)	NCBI		HuRef
CHM1_1	17	34,246,527 - 34,260,460 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	36,802,865 - 36,816,799 (-)	NCBI		T2T-CHM13v2.0

Heatr9
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	83,402,505 - 83,413,319 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	83,402,562 - 83,413,001 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	83,511,679 - 83,522,494 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	83,511,736 - 83,522,175 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	83,325,238 - 83,335,677 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	83,327,874 - 83,336,815 (-)	NCBI		MGSCv36	mm8
Celera	11	93,113,271 - 93,123,711 (-)	NCBI		Celera
Cytogenetic Map	11	C	NCBI
cM Map	11	50.61	NCBI

Heatr9
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	68,806,634 - 68,816,815 (-)	NCBI		GRCr8
mRatBN7.2	10	68,309,128 - 68,320,650 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	68,308,579 - 68,319,376 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	10	70,726,068 - 70,736,707 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	70,726,071 - 70,735,742 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	70,358,967 - 70,369,911 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	71,592,183 - 71,601,655 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	67,250,508 - 67,261,147 (-)	NCBI		Celera
Cytogenetic Map	10	q26	NCBI

Heatr9
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955481	10,279,049 - 10,291,098 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955481	10,279,135 - 10,291,085 (-)	NCBI	ChiLan1.0	ChiLan1.0

HEATR9
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	28,606,808 - 28,622,262 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	30,484,981 - 30,501,527 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	20,926,189 - 20,941,274 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	21,221,813 - 21,235,664 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	21,221,813 - 21,235,664 (+)	Ensembl	panpan1.1		panPan2

HEATR9
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	37,825,327 - 37,838,072 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	37,047,813 - 37,061,255 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	38,635,273 - 38,648,755 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	38,635,424 - 38,647,790 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	37,418,085 - 37,431,550 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	37,703,641 - 37,717,099 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	37,791,059 - 37,804,521 (+)	NCBI		UU_Cfam_GSD_1.0

Heatr9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	36,825,535 - 36,837,655 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936490	237,501 - 248,107 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936490	237,475 - 249,361 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HEATR9
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	29,332,131 - 29,348,083 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	29,330,304 - 29,347,834 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666075	627,969 - 643,685 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Heatr9
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624875	3,318,693 - 3,331,349 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624875	3,317,940 - 3,331,349 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in HEATR9
769 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium
Low	7	2	3	5	1	13	1	1	1
Below cutoff	3				1	9	1	2	2

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021067398	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000080	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU896616	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01118023	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000019272 ⟹ ENSSSCP00000018761

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	12	39,663,000 - 39,679,632 (+)	Ensembl

RefSeq Acc Id:

XM_021067398 ⟹ XP_020923057

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	12	39,662,786 - 39,679,788 (+)	NCBI

Sequence:

show sequence

AGACGTCATGGCTCCTAGTGGGATTTGTTTCCGCTGTGCCACAACGGGAACTTCTAACTTTCTT
TTTGAATTTATGCCTCACCACTGCCCCTCTAGCTAGCCAGACAGGCATGGCTCTCCCACTTTTC
AGAGAGGAAACCAAAGCTCCCAGAAGTAAAATGACTAGCTCAATCCACAGGCCAGCAGACACCA
GGGCTGGGGCTCCAGAATGGAAGCAGAGTGTTCTGTTTACCTAGGAGGTCTTGTTGCTCAGCAC
TTGGAGGCTTCTACCCCCAGAAGCCCAGACACCTTACCAGTGCCCCTTGTCCCACAGAGGGCAG
GTTTCCCCAAGCTGTGTCCCCACTCCCACGAGGGAGCAGTGCCTGTAGCCTCTTCTCCCAGCAG
GTTCCTCCTGGCCCCACCAGGAGAAGAGGATGGCCCACCAAAAATCAGTCGACATCTTTGACCT
CAACAGGTCAATGCTCAAGTACCCATGGCTGGAGTATCCAGAAAGGACCAAAGAACTCAGAAGA
GCCACCGCTCCTGTTGACTTGCCCTTGTCCTGCTACCAGATGCCAAAGGAAGAGTTCCCCCCAA
GTCCAGAGTGCTGGAGGCAGCACCCGAGCAAGCCAGACTCTGTACCTTACTGCCACTCCAAGAA
GCCTGAGCTCTGCACACACTGGCGCACCCTGTGTGATCAGAGGAAGGAACGGGAGGCCCAGAAG
ATACCTCGGCAAATGAGAGATCACTCCAGGAACATTGAGGAGGGAGCCCTCATCCAAAAACTCC
ATCTCCCCATGAGCAAGCTGACTATAAAGTCCCAGAGGGAACCCAAGCCCTTAGACCCGACTGG
GGACCCCATGAAGTGGCAAAGATTAAAGGAACTCACAAGAAGCCTGAAATCTCCCAGAGAGGAT
GAGCAGCTCTATGCAGCACAGGCTCTGGGGTGTCTGGGTGTCAACGACAAGTTTATCATGGAAG
CACTATGGCAGGTGGCCCAAACTGGTCCGGAGAAAGTAAAGTACGAGGCCTACCGAACCCTGGC
CATCCTGGGCTGCCTGAATAAGCACGTGATCCACGCTCTCATCAAGCAACTGAAGGGGCAAAAT
GAGGGGAAGAGGATGGATACTCTGACGGTGCTACGGGCGGCTCTGAACTCCAGGGCTACTGTCC
CCAAAGACCAGAGGACTCAAGTTGAGGACGAAGAGAAGCTGGTGCCTGTGCTGCAAATGCTGAT
AAAGAAATCAGTGAACAAAGCAGCGATGGAGGCAGCCCTGTGCTTGGGGTTCCTGAGGCCCTGT
AGCAACATAGCCCGAGAGTACCTGCTGCAGTGCCTGTGCCAAGGGCCAAAGACCCAGCAGATGA
AGGCACTTAGTATGCTGGTCAAGATAATGGGTGTGCACTCGGCCACGGTCATCAGGACCATCCT
AGACCAGCTGTGCGATTCCAGTGCCCTTGAGCATCGCTTTGAGGCCATTCAGATGCTCAAAACC
ATTGGGCTAGAGCGGATCCAAGCACACGGCCTGGAAGGACTCACATTTGACCTGCTCAGGAGGA
AGACATATAATGAACCCTTCTTCGCTATGAGGCAGGCTGTTGCTGAAACTGTGGAAGAGCTCAA
GATGAAGCCCGCAATGATGAACTTGGTGGAGGCGCAACTAATGAGCTCAAACACCACTGCACGC
CAGGAAGCAGTCATCTCTTTGGGCGTCCTGGGGATCCGAAGCCCACAGGTGTTCTACTTGGTCC
TGGACATGCTGGATGTGGAAAAGAGCCCGTCTGTGAAGAAGAGTCTACAAGAAACATTAATTCT
TTTGGCCTCAATTGATCCCTGGATCCAAAACAAGCTGAAGAACAAGGTTCTCTGCATCTATGAG
GTGCCTAAGAGCAGCTTGAAGGAAGAGCCTACGAAGTTCCAGAAAAAGCCTGAGGACCCAGAAG
AGTTCAATGTCCCAGATTTTCAACTTGCACAGCTGAACCCCTTGTTCCTTACAAAGCCCAGAGC
CACATCAGACCAGCAGAAAAGGCTAAACACCCACAAAGGGTCTGAAACCTCTCCTTTCCCACCC
TGTTACTCTAAACCACAAAAACACGGGTCACAGGACACCACAGGGTCCTGGGCACGAGCGATCA
GGAAACAGCTTCGGATCCTTGCTGAGACCTCCAGTAGGTCAGTTCTTTTGGCCAAGTCCCTGCT
CTCTCCTTAAGGATGCTTCTCAGAGTTCCTGTCATGGCTCAGCAGAAATGAATCTGACTAGGAT
CCATGAGGACACAGGCTCAATCCCTGATCATGCTCAGTGGGTTAAGTCCATCGATGCCATGAGC
T

hide sequence

Protein Sequences


Protein RefSeqs	XP_020923057	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000018761
	ENSSSCP00000018761.4
	ENSSSCP00005006601.1
	ENSSSCP00015011504.1
	ENSSSCP00030031720.1
	ENSSSCP00050045137.1
	ENSSSCP00060011945.1

RefSeq Acc Id:

XP_020923057 ⟸ XM_021067398

- UniProtKB:

A0A8D1UNC3 (UniProtKB/TrEMBL), F1S188 (UniProtKB/TrEMBL), A0A8D1P2Q1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAHQKSVDIFDLNRSMLKYPWLEYPERTKELRRATAPVDLPLSCYQMPKEEFPPSPECWRQHPS
KPDSVPYCHSKKPELCTHWRTLCDQRKEREAQKIPRQMRDHSRNIEEGALIQKLHLPMSKLTIK
SQREPKPLDPTGDPMKWQRLKELTRSLKSPREDEQLYAAQALGCLGVNDKFIMEALWQVAQTGP
EKVKYEAYRTLAILGCLNKHVIHALIKQLKGQNEGKRMDTLTVLRAALNSRATVPKDQRTQVED
EEKLVPVLQMLIKKSVNKAAMEAALCLGFLRPCSNIAREYLLQCLCQGPKTQQMKALSMLVKIM
GVHSATVIRTILDQLCDSSALEHRFEAIQMLKTIGLERIQAHGLEGLTFDLLRRKTYNEPFFAM
RQAVAETVEELKMKPAMMNLVEAQLMSSNTTARQEAVISLGVLGIRSPQVFYLVLDMLDVEKSP
SVKKSLQETLILLASIDPWIQNKLKNKVLCIYEVPKSSLKEEPTKFQKKPEDPEEFNVPDFQLA
QLNPLFLTKPRATSDQQKRLNTHKGSETSPFPPCYSKPQKHGSQDTTGSWARAIRKQLRILAET
SSRSVLLAKSLLSP

hide sequence

RefSeq Acc Id:

ENSSSCP00000018761 ⟸ ENSSSCT00000019272

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000017706	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00005007128	UniProtKB/TrEMBL
	ENSSSCG00015022049	UniProtKB/TrEMBL
	ENSSSCG00030049835	UniProtKB/TrEMBL
	ENSSSCG00050075348	UniProtKB/TrEMBL
	ENSSSCG00060020604	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000019272	ENTREZGENE
	ENSSSCT00000019272.5	UniProtKB/TrEMBL
	ENSSSCT00005011275.1	UniProtKB/TrEMBL
	ENSSSCT00015029254.1	UniProtKB/TrEMBL
	ENSSSCT00030069495.1	UniProtKB/TrEMBL
	ENSSSCT00050103290.1	UniProtKB/TrEMBL
	ENSSSCT00060027915.1	UniProtKB/TrEMBL
Gene3D-CATH	1.25.10.10	UniProtKB/TrEMBL
InterPro	ARM-like	UniProtKB/TrEMBL
	ARM-type_fold	UniProtKB/TrEMBL
NCBI Gene	HEATR9	ENTREZGENE
PANTHER	PROTEIN HEATR9	UniProtKB/TrEMBL
	PROTEIN HEATR9	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48371	UniProtKB/TrEMBL
UniProt	A0A8D1P2Q1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1UNC3	ENTREZGENE, UniProtKB/TrEMBL
	F1S188	ENTREZGENE
UniProt Secondary	F1S188	UniProtKB/TrEMBL
VGNC ID	VGNC:88829	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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