FCRL6 (Fc receptor like 6) - Rat Genome Database

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Gene: FCRL6 (Fc receptor like 6) Sus scrofa
Analyze
Symbol: FCRL6
Name: Fc receptor like 6
RGD ID: 13843602
Description: ENCODES a protein that exhibits MHC class II protein binding (inferred); phosphatase binding (inferred); protein phosphatase binding (inferred); INVOLVED IN cell surface receptor signaling pathway (inferred); ASSOCIATED WITH autoimmune interstitial lung, joint, and kidney disease (ortholog); COVID-19 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN external side of plasma membrane (inferred); membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Fc receptor-like protein 6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl490,681,364 - 90,700,792 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1490,681,084 - 90,698,102 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2498,655,695 - 98,680,108 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
FCRL6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl490,681,364 - 90,700,792 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1490,681,084 - 90,698,102 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2498,655,695 - 98,680,108 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FCRL6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381159,800,512 - 159,816,257 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1159,800,511 - 159,816,257 (+)EnsemblGRCh38hg38GRCh38
GRCh371159,770,302 - 159,786,047 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361158,038,797 - 158,052,671 (+)NCBINCBI36Build 36hg18NCBI36
Celera1132,840,594 - 132,854,468 (+)NCBICelera
Cytogenetic Map1q23.2NCBI
HuRef1131,128,599 - 131,142,473 (+)NCBIHuRef
CHM1_11161,167,524 - 161,181,398 (+)NCBICHM1_1
T2T-CHM13v2.01158,937,524 - 158,953,270 (+)NCBIT2T-CHM13v2.0
Fcrl6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391172,423,081 - 172,445,889 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1172,424,209 - 172,430,118 (-)EnsemblGRCm39 Ensembl
GRCm381172,595,514 - 172,618,322 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1172,596,642 - 172,602,551 (-)EnsemblGRCm38mm10GRCm38
MGSCv371174,526,771 - 174,532,682 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361174,528,329 - 174,532,591 (-)NCBIMGSCv36mm8
Celera1175,452,446 - 175,458,803 (-)NCBICelera
Cytogenetic Map1H3NCBI
cM Map180.0NCBI
Fcrl6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81387,595,058 - 87,604,657 (-)NCBIGRCr8
mRatBN7.21385,062,709 - 85,072,308 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1385,066,694 - 85,072,600 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1387,565,846 - 87,575,333 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01388,966,119 - 88,975,598 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01386,150,861 - 86,160,342 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01390,982,814 - 90,992,415 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1390,982,814 - 90,992,406 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01395,501,915 - 95,511,516 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41388,601,569 - 88,611,170 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1384,671,572 - 84,681,173 (-)NCBICelera
Cytogenetic Map13q24NCBI
Fcrl6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495546811,581,225 - 11,617,268 (+)NCBIChiLan1.0ChiLan1.0
LOC100974844
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2190,038,329 - 90,047,229 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1189,778,352 - 89,792,048 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01135,153,911 - 135,167,699 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11139,072,824 - 139,088,538 (+)NCBIpanpan1.1PanPan1.1panPan2
FCRL6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13822,311,454 - 22,320,105 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3822,387,536 - 22,396,868 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03822,433,000 - 22,442,314 (-)NCBIROS_Cfam_1.0
UNSW_CanFamBas_1.03822,732,350 - 22,741,646 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03823,143,360 - 23,152,706 (-)NCBIUU_Cfam_GSD_1.0
Fcrl6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244050585,950,574 - 5,960,521 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936740794,680 - 809,560 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC103223750
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1204,134,780 - 4,170,617 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl204,135,153 - 4,148,730 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660383,239,258 - 3,256,054 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fcrl6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247941,436,143 - 1,446,215 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FCRL6
511 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system hemolymphoid system nervous system reproductive system respiratory system
High
Medium
Low 5 2 4
Below cutoff 4 1 2 1 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000007010   ⟹   ENSSSCP00000006820
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl490,681,443 - 90,698,077 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000094136   ⟹   ENSSSCP00000076118
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl490,681,443 - 90,700,792 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000100479   ⟹   ENSSSCP00000079515
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl490,681,364 - 90,698,077 (-)Ensembl
RefSeq Acc Id: XM_021089590   ⟹   XP_020945249
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1490,681,084 - 90,698,102 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020945249   ⟸   XM_021089590
- UniProtKB: A0A8D0W9M7 (UniProtKB/TrEMBL),   A0A480EB38 (UniProtKB/TrEMBL),   A0A8D1GJA8 (UniProtKB/TrEMBL),   A0A8D1XZC7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000006820   ⟸   ENSSSCT00000007010
RefSeq Acc Id: ENSSSCP00000076118   ⟸   ENSSSCT00000094136
RefSeq Acc Id: ENSSSCP00000079515   ⟸   ENSSSCT00000100479
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000006397 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015050627 UniProtKB/TrEMBL
  ENSSSCG00030027515 UniProtKB/TrEMBL
  ENSSSCG00035020452 UniProtKB/TrEMBL
  ENSSSCG00040020698 UniProtKB/TrEMBL
  ENSSSCG00045003973 UniProtKB/TrEMBL
  ENSSSCG00050010593 UniProtKB/TrEMBL
  ENSSSCG00055028323 UniProtKB/TrEMBL
  ENSSSCG00065024779 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000007010.5 UniProtKB/TrEMBL
  ENSSSCT00000094136.1 UniProtKB/TrEMBL
  ENSSSCT00000100479 ENTREZGENE
  ENSSSCT00000100479.1 UniProtKB/TrEMBL
  ENSSSCT00015067630.1 UniProtKB/TrEMBL
  ENSSSCT00030038475.1 UniProtKB/TrEMBL
  ENSSSCT00035026609.1 UniProtKB/TrEMBL
  ENSSSCT00040027893.1 UniProtKB/TrEMBL
  ENSSSCT00045006610.1 UniProtKB/TrEMBL
  ENSSSCT00050014266.1 UniProtKB/TrEMBL
  ENSSSCT00055056222.1 UniProtKB/TrEMBL
  ENSSSCT00065033118.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
NCBI Gene FCRL6 ENTREZGENE
PANTHER FC RECEPTOR-LIKE PROTEIN 6 UniProtKB/TrEMBL
  IMMUNOGLOBULIN FC RECEPTOR UniProtKB/TrEMBL
Pfam Ig_2 UniProtKB/TrEMBL
  Ig_3 UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART IGc2 UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A480EB38 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0W9M7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1DUC5_PIG UniProtKB/TrEMBL
  A0A8D1GJA8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1XZC7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4F9W4_PIG UniProtKB/TrEMBL
  A0A8W4FJ77_PIG UniProtKB/TrEMBL
  F1RJ82_PIG UniProtKB/TrEMBL
VGNC ID VGNC:88072 ENTREZGENE