LINC02628 (long intergenic non-protein coding RNA 2628) - Rat Genome Database

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Gene: LINC02628 (long intergenic non-protein coding RNA 2628) Homo sapiens
Analyze
Symbol: LINC02628
Name: long intergenic non-protein coding RNA 2628
RGD ID: 13825340
HGNC Page HGNC:54107
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381033,579,012 - 33,601,030 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1033,578,931 - 33,600,040 (-)EnsemblGRCh38hg38GRCh38
Cytogenetic Map10p11.22NCBI
CHM1_11033,869,472 - 33,891,557 (-)NCBICHM1_1
T2T-CHM13v2.01033,607,807 - 33,629,782 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LINC02628
1 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 10p15.1-q11.22(chr10:4604734-48074662)x3 copy number gain See cases [RCV000141497] Chr10:4604734..48074662 [GRCh38]
Chr10:4646926..47531169 [GRCh37]
Chr10:4636926..47125152 [NCBI36]
Chr10:10p15.1-q11.22		 benign
GRCh38/hg38 10p11.22-11.1(chr10:31999920-38119681)x3 copy number gain See cases [RCV000135414] Chr10:31999920..38119681 [GRCh38]
Chr10:32288848..38408609 [GRCh37]
Chr10:32328854..38448615 [NCBI36]
Chr10:10p11.22-11.1		 pathogenic
Single allele deletion not provided [RCV000677961] Chr10:33254302..35641435 [GRCh38]
Chr10:33543230..35930363 [GRCh37]
Chr10:10p11.22-11.21		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:88
Count of miRNA genes:88
Interacting mature miRNAs:88
Transcripts:ENST00000457848
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1 1 3 1 1 145 2
Below cutoff 44 59 21 7 37 3 63 29 34 15 223 27 4 16 42

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000457848
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1033,578,931 - 33,600,040 (-)Ensembl
RefSeq Acc Id: NR_187516
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381033,579,012 - 33,601,030 (-)NCBI
T2T-CHM13v2.01033,607,807 - 33,629,782 (-)NCBI

Additional Information

Database Acc Id Source(s)
COSMIC LINC02628 COSMIC
Ensembl Genes ENSG00000226412 Ensembl
GTEx ENSG00000226412 GTEx
HGNC ID HGNC:54107 ENTREZGENE
Human Proteome Map LINC02628 Human Proteome Map
NCBI Gene LINC02628 ENTREZGENE
RNAcentral URS00026A1DA3 RNACentral