MYO3B-AS1 (MYO3B antisense RNA 1) - Rat Genome Database

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Gene: MYO3B-AS1 (MYO3B antisense RNA 1) Homo sapiens
Analyze
Symbol: MYO3B-AS1
Name: MYO3B antisense RNA 1
RGD ID: 13793304
HGNC Page HGNC:40713
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382170,340,517 - 170,350,943 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2170,332,085 - 170,408,564 (-)EnsemblGRCh38hg38GRCh38
GRCh372171,197,027 - 171,207,453 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map2q31.1NCBI
HuRef2163,084,536 - 163,087,650 (-)NCBIHuRef
CHM1_12171,203,393 - 171,206,513 (-)NCBICHM1_1
T2T-CHM13v2.02170,817,647 - 170,828,073 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:16344560  


Genomics


Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 2q24.3-31.1(chr2:164066038-172097886)x1 copy number loss See cases [RCV000054123] Chr2:164066038..172097886 [GRCh38]
Chr2:164922548..172962614 [GRCh37]
Chr2:164630794..172670860 [NCBI36]
Chr2:2q24.3-31.1
pathogenic
GRCh38/hg38 2q24.3-31.1(chr2:164850117-175559190)x1 copy number loss See cases [RCV000051201] Chr2:164850117..175559190 [GRCh38]
Chr2:165706627..176423918 [GRCh37]
Chr2:165414873..176132164 [NCBI36]
Chr2:2q24.3-31.1
pathogenic
GRCh38/hg38 2q24.3-32.1(chr2:163965382-182195062)x1 copy number loss See cases [RCV000054122] Chr2:163965382..182195062 [GRCh38]
Chr2:164821892..183059789 [GRCh37]
Chr2:164530138..182768034 [NCBI36]
Chr2:2q24.3-32.1
pathogenic
GRCh38/hg38 2q31.1(chr2:170101430-171243609)x1 copy number loss See cases [RCV000054126] Chr2:170101430..171243609 [GRCh38]
Chr2:170957940..172100119 [GRCh37]
Chr2:170666186..171808365 [NCBI36]
Chr2:2q31.1
pathogenic
GRCh38/hg38 2q24.1-31.1(chr2:154294042-175989372)x3 copy number gain See cases [RCV000142286] Chr2:154294042..175989372 [GRCh38]
Chr2:155150555..176854100 [GRCh37]
Chr2:154858801..176562346 [NCBI36]
Chr2:2q24.1-31.1
pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3523
Count of miRNA genes:830
Interacting mature miRNAs:965
Transcripts:ENST00000413923, ENST00000424391, ENST00000438635, ENST00000457834, ENST00000593578, ENST00000593599, ENST00000593861, ENST00000594762, ENST00000595011, ENST00000595528, ENST00000596641, ENST00000597915, ENST00000598749, ENST00000599635, ENST00000600365, ENST00000600436, ENST00000600489, ENST00000607977, ENST00000608050, ENST00000608085, ENST00000608325, ENST00000608503, ENST00000608716, ENST00000609097, ENST00000609459, ENST00000609532, ENST00000609666, ENST00000609725, ENST00000609890, ENST00000609996, ENST00000610113, ENST00000610274
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 224
Low 3 2 3 8 13 4 1 7 149 3 1 5
Below cutoff 499 475 719 94 514 45 1552 499 913 139 261 701 51 231 978 1

Sequence


RefSeq Acc Id: ENST00000413923
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,341,114 - 170,344,928 (-)Ensembl
RefSeq Acc Id: ENST00000424391
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,341,101 - 170,350,943 (-)Ensembl
RefSeq Acc Id: ENST00000438635
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,344,849 - 170,351,055 (-)Ensembl
RefSeq Acc Id: ENST00000457834
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,344,835 - 170,351,071 (-)Ensembl
RefSeq Acc Id: ENST00000593578
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,334,013 - 170,344,927 (-)Ensembl
RefSeq Acc Id: ENST00000593599
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,341,191 - 170,344,928 (-)Ensembl
RefSeq Acc Id: ENST00000593861
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,334,765 - 170,344,928 (-)Ensembl
RefSeq Acc Id: ENST00000594762
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,334,099 - 170,344,928 (-)Ensembl
RefSeq Acc Id: ENST00000595011
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,341,263 - 170,351,108 (-)Ensembl
RefSeq Acc Id: ENST00000595528
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,333,982 - 170,344,928 (-)Ensembl
RefSeq Acc Id: ENST00000596641
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,340,518 - 170,344,928 (-)Ensembl
RefSeq Acc Id: ENST00000597915
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,333,928 - 170,344,928 (-)Ensembl
RefSeq Acc Id: ENST00000598749
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,340,639 - 170,344,928 (-)Ensembl
RefSeq Acc Id: ENST00000599635
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,334,372 - 170,344,928 (-)Ensembl
RefSeq Acc Id: ENST00000600365
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,334,859 - 170,344,928 (-)Ensembl
RefSeq Acc Id: ENST00000600436
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,334,372 - 170,344,928 (-)Ensembl
RefSeq Acc Id: ENST00000600489
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,344,799 - 170,351,118 (-)Ensembl
RefSeq Acc Id: ENST00000607977
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,341,207 - 170,346,276 (-)Ensembl
RefSeq Acc Id: ENST00000608050
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,343,588 - 170,351,103 (-)Ensembl
RefSeq Acc Id: ENST00000608085
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,343,594 - 170,350,763 (-)Ensembl
RefSeq Acc Id: ENST00000608325
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,341,238 - 170,351,108 (-)Ensembl
RefSeq Acc Id: ENST00000608503
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,341,195 - 170,347,997 (-)Ensembl
RefSeq Acc Id: ENST00000608716
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,341,195 - 170,350,627 (-)Ensembl
RefSeq Acc Id: ENST00000609097
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,341,218 - 170,346,276 (-)Ensembl
RefSeq Acc Id: ENST00000609459
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,343,587 - 170,351,102 (-)Ensembl
RefSeq Acc Id: ENST00000609532
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,341,321 - 170,351,099 (-)Ensembl
RefSeq Acc Id: ENST00000609666
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,340,523 - 170,351,111 (-)Ensembl
RefSeq Acc Id: ENST00000609725
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,343,606 - 170,350,792 (-)Ensembl
RefSeq Acc Id: ENST00000609890
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,341,196 - 170,350,581 (-)Ensembl
RefSeq Acc Id: ENST00000609996
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,341,195 - 170,350,373 (-)Ensembl
RefSeq Acc Id: ENST00000610113
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,343,591 - 170,351,117 (-)Ensembl
RefSeq Acc Id: ENST00000610274
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,341,165 - 170,351,108 (-)Ensembl
RefSeq Acc Id: ENST00000610954
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,343,587 - 170,351,106 (-)Ensembl
RefSeq Acc Id: ENST00000613316
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,343,587 - 170,350,942 (-)Ensembl
RefSeq Acc Id: ENST00000616148
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,343,587 - 170,350,870 (-)Ensembl
RefSeq Acc Id: ENST00000620227
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,343,587 - 170,350,848 (-)Ensembl
RefSeq Acc Id: ENST00000622590
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,343,587 - 170,350,916 (-)Ensembl
RefSeq Acc Id: ENST00000625235
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,340,553 - 170,344,928 (-)Ensembl
RefSeq Acc Id: ENST00000625384
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,333,933 - 170,341,410 (-)Ensembl
RefSeq Acc Id: ENST00000625393
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,341,113 - 170,344,901 (-)Ensembl
RefSeq Acc Id: ENST00000625406
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,333,937 - 170,344,928 (-)Ensembl
RefSeq Acc Id: ENST00000625440
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,334,801 - 170,344,926 (-)Ensembl
RefSeq Acc Id: ENST00000625454
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,334,049 - 170,341,410 (-)Ensembl
RefSeq Acc Id: ENST00000625790
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,346,300 - 170,351,012 (-)Ensembl
RefSeq Acc Id: ENST00000625968
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,341,196 - 170,408,564 (-)Ensembl
RefSeq Acc Id: ENST00000626351
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,334,083 - 170,344,928 (-)Ensembl
RefSeq Acc Id: ENST00000626618
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,346,309 - 170,348,654 (-)Ensembl
RefSeq Acc Id: ENST00000626724
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,343,587 - 170,350,641 (-)Ensembl
RefSeq Acc Id: ENST00000626776
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,333,925 - 170,344,883 (-)Ensembl
RefSeq Acc Id: ENST00000626959
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,337,849 - 170,344,883 (-)Ensembl
RefSeq Acc Id: ENST00000627214
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,341,153 - 170,350,892 (-)Ensembl
RefSeq Acc Id: ENST00000627332
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,333,928 - 170,344,883 (-)Ensembl
RefSeq Acc Id: ENST00000627387
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,333,925 - 170,344,926 (-)Ensembl
RefSeq Acc Id: ENST00000627454
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,333,931 - 170,344,928 (-)Ensembl
RefSeq Acc Id: ENST00000627884
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,333,924 - 170,344,928 (-)Ensembl
RefSeq Acc Id: ENST00000628002
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,342,104 - 170,343,656 (-)Ensembl
RefSeq Acc Id: ENST00000628338
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,343,587 - 170,351,030 (-)Ensembl
RefSeq Acc Id: ENST00000628535
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,341,153 - 170,350,973 (-)Ensembl
RefSeq Acc Id: ENST00000629445
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,333,955 - 170,344,882 (-)Ensembl
RefSeq Acc Id: ENST00000629469
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,341,154 - 170,350,343 (-)Ensembl
RefSeq Acc Id: ENST00000629973
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,334,043 - 170,344,883 (-)Ensembl
RefSeq Acc Id: ENST00000630033
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,340,594 - 170,344,928 (-)Ensembl
RefSeq Acc Id: ENST00000630277
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,333,928 - 170,344,928 (-)Ensembl
RefSeq Acc Id: ENST00000630367
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,332,085 - 170,344,880 (-)Ensembl
RefSeq Acc Id: ENST00000630496
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,333,959 - 170,343,600 (-)Ensembl
RefSeq Acc Id: ENST00000630498
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,341,098 - 170,344,928 (-)Ensembl
RefSeq Acc Id: ENST00000630532
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,343,587 - 170,350,988 (-)Ensembl
RefSeq Acc Id: ENST00000630561
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,333,927 - 170,345,826 (-)Ensembl
RefSeq Acc Id: ENST00000630683
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,343,587 - 170,350,978 (-)Ensembl
RefSeq Acc Id: ENST00000630733
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,334,074 - 170,341,253 (-)Ensembl
RefSeq Acc Id: ENST00000630778
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,340,522 - 170,344,928 (-)Ensembl
RefSeq Acc Id: ENST00000631125
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,333,999 - 170,341,410 (-)Ensembl
RefSeq Acc Id: ENST00000631172
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2170,333,924 - 170,344,883 (-)Ensembl
RefSeq Acc Id: NR_110576
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382170,340,517 - 170,350,943 (-)NCBI
T2T-CHM13v2.02170,817,647 - 170,828,073 (-)NCBI
Sequence:
Promoters
RGD ID:15095495
Promoter ID:EPDNEWNC_H333
Type:initiation region
Name:MYO3B-AS1_1
Description:MYO3B antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:40713]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh382170,343,670 - 170,343,730EPDNEWNC
RGD ID:15095509
Promoter ID:EPDNEWNC_H334
Type:initiation region
Name:MYO3B-AS1_2
Description:MYO3B antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:40713]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh382170,351,071 - 170,351,131EPDNEWNC

Additional Information

Database Acc Id Source(s)
COSMIC MYO3B-AS1 COSMIC
Ensembl Genes ENSG00000231898 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000609666 ENTREZGENE
GTEx ENSG00000231898 GTEx
HGNC ID HGNC:40713 ENTREZGENE
Human Proteome Map MYO3B-AS1 Human Proteome Map
NCBI Gene MYO3B-AS1 ENTREZGENE
RNAcentral URS000075A229 RNACentral