ZNF687-AS1 (ZNF687 antisense RNA 1) - Rat Genome Database

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Gene: ZNF687-AS1 (ZNF687 antisense RNA 1) Homo sapiens
Analyze
Symbol: ZNF687-AS1
Name: ZNF687 antisense RNA 1
RGD ID: 13793011
HGNC Page HGNC:54048
Description: INTERACTS WITH lipopolysaccharide; S-(1,2-dichlorovinyl)-L-cysteine
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
RGD Orthologs
Mouse
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381151,280,024 - 151,281,929 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1151,279,678 - 151,282,000 (-)EnsemblGRCh38hg38GRCh38
GRCh371151,252,500 - 151,254,405 (-)NCBIGRCh37GRCh37hg19GRCh37
Celera1124,367,790 - 124,370,056 (-)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1122,630,441 - 122,632,348 (-)NCBIHuRef
CHM1_11152,648,262 - 152,650,170 (-)NCBICHM1_1
T2T-CHM13v2.01150,403,717 - 150,405,623 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:16344560  


Genomics

Comparative Map Data
ZNF687-AS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381151,280,024 - 151,281,929 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1151,279,678 - 151,282,000 (-)EnsemblGRCh38hg38GRCh38
GRCh371151,252,500 - 151,254,405 (-)NCBIGRCh37GRCh37hg19GRCh37
Celera1124,367,790 - 124,370,056 (-)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1122,630,441 - 122,632,348 (-)NCBIHuRef
CHM1_11152,648,262 - 152,650,170 (-)NCBICHM1_1
T2T-CHM13v2.01150,403,717 - 150,405,623 (-)NCBIT2T-CHM13v2.0
4930481B07Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39394,922,936 - 94,930,526 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl394,922,936 - 94,927,449 (+)EnsemblGRCm39 Ensembl
GRCm38395,015,529 - 95,021,983 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl395,015,625 - 95,020,138 (+)EnsemblGRCm38mm10GRCm38
MGSCv37394,819,547 - 94,820,994 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera396,446,837 - 96,448,323 (+)NCBICelera
Cytogenetic Map3F2.1NCBI
cM Map340.74NCBI


Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 1q21.3(chr1:150989333-151584777)x1 copy number loss See cases [RCV000138949] Chr1:150989333..151584777 [GRCh38]
Chr1:150961809..151557253 [GRCh37]
Chr1:149228433..149823877 [NCBI36]
Chr1:1q21.3		 likely pathogenic
GRCh38/hg38 1q21.2-25.2(chr1:149854269-180267197)x3 copy number gain See cases [RCV000143515] Chr1:149854269..180267197 [GRCh38]
Chr1:149825831..180236332 [GRCh37]
Chr1:148092455..178502955 [NCBI36]
Chr1:1q21.2-25.2		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:349
Count of miRNA genes:280
Interacting mature miRNAs:288
Transcripts:ENST00000447795, ENST00000494138
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1 5 3 26 3 1 6 3 2 67 25
Low 1226 1400 1590 498 1670 391 1828 670 1708 384 1071 1376 119 701 991 4
Below cutoff 1002 1251 120 111 205 65 1990 1207 1644 31 244 175 46 432 1412

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000447795
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1151,280,024 - 151,281,929 (-)Ensembl
RefSeq Acc Id: ENST00000494138
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1151,280,024 - 151,281,970 (-)Ensembl
RefSeq Acc Id: ENST00000660511
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1151,280,030 - 151,281,950 (-)Ensembl
RefSeq Acc Id: ENST00000661167
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1151,279,678 - 151,282,000 (-)Ensembl
RefSeq Acc Id: NR_135595
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381151,280,024 - 151,281,929 (-)NCBI
T2T-CHM13v2.01150,403,717 - 150,405,623 (-)NCBI
Sequence:
Promoters
RGD ID:15095285
Promoter ID:EPDNEWNC_H120
Type:initiation region
Name:ZNF687-AS1_1
Description:ZNF687 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:54048]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381151,281,972 - 151,282,032EPDNEWNC

Additional Information

Database Acc Id Source(s)
COSMIC ZNF687-AS1 COSMIC
Ensembl Genes ENSG00000232671 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000447795 ENTREZGENE
GTEx ENSG00000232671 GTEx
HGNC ID HGNC:54048 ENTREZGENE
Human Proteome Map ZNF687-AS1 Human Proteome Map
NCBI Gene ZNF687-AS1 ENTREZGENE
RNAcentral URS0000A76C56 RNACentral