CHROMR (cholesterol induced regulator of metabolism RNA) - Rat Genome Database

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Gene: CHROMR (cholesterol induced regulator of metabolism RNA) Homo sapiens
Analyze
Symbol: CHROMR
Name: cholesterol induced regulator of metabolism RNA
RGD ID: 13792976
HGNC Page HGNC:54059
Description: ASSOCIATED WITH Dystonia; dystonia; dystonia 16; INTERACTS WITH methylparaben; sodium arsenite
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: CHROME; PRKRA antisense RNA 1; PRKRA-AS1
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382178,413,659 - 178,440,243 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2178,413,635 - 178,440,243 (+)EnsemblGRCh38hg38GRCh38
GRCh372179,278,386 - 179,304,970 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map2q31.2NCBI
HuRef2171,149,112 - 171,169,502 (+)NCBIHuRef
CHM1_12179,284,435 - 179,304,145 (+)NCBICHM1_1
T2T-CHM13v2.02178,896,451 - 178,923,035 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
dystonia  (IAGP)
dystonia 16  (IAGP)
genetic disease  (IAGP)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
Dystonia  (IAGP)
References
Additional References at PubMed
PMID:12766061   PMID:15146197   PMID:16344560   PMID:17213182   PMID:23472185   PMID:31410392   PMID:36001732  


Genomics

Variants

.
Variants in CHROMR
54 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
NM_003690.5(PRKRA):c.610-1G>A single nucleotide variant Dystonia 16 [RCV001292653] Chr2:178436320 [GRCh38]
Chr2:179301047 [GRCh37]
Chr2:2q31.2		 pathogenic
NM_003690.5(PRKRA):c.*313G>A single nucleotide variant Dystonia 16 [RCV000407066]|not provided [RCV001690098] Chr2:178431784 [GRCh38]
Chr2:179296511 [GRCh37]
Chr2:2q31.2		 benign|uncertain significance
NM_003690.5(PRKRA):c.785-2_785-1insATATTTGGATAT insertion Dystonia 16 [RCV000490410] Chr2:178432255..178432256 [GRCh38]
Chr2:179296982..179296983 [GRCh37]
Chr2:2q31.2		 uncertain significance
NM_003690.5(PRKRA):c.784+1G>A single nucleotide variant Dystonia 16 [RCV001292746] Chr2:178436144 [GRCh38]
Chr2:179300871 [GRCh37]
Chr2:2q31.2		 pathogenic
NM_003690.5(PRKRA):c.795C>T (p.Ser265=) single nucleotide variant Dystonia 16 [RCV000537834]|not provided [RCV001672841] Chr2:178432244 [GRCh38]
Chr2:179296971 [GRCh37]
Chr2:2q31.2		 benign|likely benign
NM_003690.5(PRKRA):c.704G>C (p.Ser235Thr) single nucleotide variant Dystonia 16 [RCV001859728]|not provided [RCV000585196] Chr2:178436225 [GRCh38]
Chr2:179300952 [GRCh37]
Chr2:2q31.2		 uncertain significance
GRCh38/hg38 2q31.2-33.1(chr2:177874070-198525492)x1 copy number loss See cases [RCV000052559] Chr2:177874070..198525492 [GRCh38]
Chr2:178738797..199390216 [GRCh37]
Chr2:178447043..199098461 [NCBI36]
Chr2:2q31.2-33.1		 pathogenic
NM_003690.5(PRKRA):c.665C>T (p.Pro222Leu) single nucleotide variant Dystonia 16 [RCV000006718]|PRKRA-related condition [RCV003914817]|not provided [RCV001786327] Chr2:178436264 [GRCh38]
Chr2:179300991 [GRCh37]
Chr2:2q31.2		 pathogenic
NM_003690.5(PRKRA):c.610-11_610-10del microsatellite Dystonia 16 [RCV000646158]|Dystonic disorder [RCV000285008]|not provided [RCV001653611] Chr2:178436329..178436330 [GRCh38]
Chr2:179301056..179301057 [GRCh37]
Chr2:2q31.2		 benign|likely benign
GRCh38/hg38 2q31.2-32.3(chr2:177827730-195125329)x1 copy number loss See cases [RCV000141735] Chr2:177827730..195125329 [GRCh38]
Chr2:178692457..195990053 [GRCh37]
Chr2:178400703..195698298 [NCBI36]
Chr2:2q31.2-32.3		 pathogenic
NM_003690.5(PRKRA):c.*265A>C single nucleotide variant Dystonia 16 [RCV000307058] Chr2:178431832 [GRCh38]
Chr2:179296559 [GRCh37]
Chr2:2q31.2		 uncertain significance
NM_003690.5(PRKRA):c.*159T>C single nucleotide variant Dystonia 16 [RCV000331570]|not provided [RCV001556258] Chr2:178431938 [GRCh38]
Chr2:179296665 [GRCh37]
Chr2:2q31.2		 benign|likely benign
NM_003690.5(PRKRA):c.766A>G (p.Ile256Val) single nucleotide variant Dystonia 16 [RCV000646154] Chr2:178436163 [GRCh38]
Chr2:179300890 [GRCh37]
Chr2:2q31.2		 uncertain significance
NM_003690.5(PRKRA):c.*151A>T single nucleotide variant Dystonia 16 [RCV000263510] Chr2:178431946 [GRCh38]
Chr2:179296673 [GRCh37]
Chr2:2q31.2		 uncertain significance
NM_003690.5(PRKRA):c.*158A>G single nucleotide variant Dystonia 16 [RCV000367520]|not provided [RCV001594965] Chr2:178431939 [GRCh38]
Chr2:179296666 [GRCh37]
Chr2:2q31.2		 benign|uncertain significance
GRCh38/hg38 2q31.1-33.2(chr2:174898848-203941548)x1 copy number loss See cases [RCV000050980] Chr2:174898848..203941548 [GRCh38]
Chr2:175763576..204806271 [GRCh37]
Chr2:175471822..204514516 [NCBI36]
Chr2:2q31.1-33.2		 pathogenic
GRCh38/hg38 2q31.1-33.1(chr2:176304445-202039790)x1 copy number loss See cases [RCV000052558] Chr2:176304445..202039790 [GRCh38]
Chr2:177169173..202904513 [GRCh37]
Chr2:176877419..202612758 [NCBI36]
Chr2:2q31.1-33.1		 pathogenic
GRCh38/hg38 2q24.3-32.1(chr2:163965382-182195062)x1 copy number loss See cases [RCV000054122] Chr2:163965382..182195062 [GRCh38]
Chr2:164821892..183059789 [GRCh37]
Chr2:164530138..182768034 [NCBI36]
Chr2:2q24.3-32.1		 pathogenic
GRCh38/hg38 2q31.1-32.1(chr2:170407688-186189894)x1 copy number loss See cases [RCV000054127] Chr2:170407688..186189894 [GRCh38]
Chr2:171264198..187054621 [GRCh37]
Chr2:170972444..186762866 [NCBI36]
Chr2:2q31.1-32.1		 pathogenic
GRCh38/hg38 2q31.1-32.2(chr2:171429233-189179568)x1 copy number loss See cases [RCV000136850] Chr2:171429233..189179568 [GRCh38]
Chr2:172285743..190044294 [GRCh37]
Chr2:171993989..189752539 [NCBI36]
Chr2:2q31.1-32.2		 pathogenic
GRCh38/hg38 2q31.1-32.2(chr2:174634502-189000964)x1 copy number loss See cases [RCV000136861] Chr2:174634502..189000964 [GRCh38]
Chr2:175499230..189865690 [GRCh37]
Chr2:175207476..189573935 [NCBI36]
Chr2:2q31.1-32.2		 pathogenic
NM_003690.5(PRKRA):c.685C>T (p.Leu229=) single nucleotide variant Dystonia 16 [RCV000860770]|not provided [RCV001579885] Chr2:178436244 [GRCh38]
Chr2:179300971 [GRCh37]
Chr2:2q31.2		 benign|likely benign
NM_003690.5(PRKRA):c.870C>T (p.Ser290=) single nucleotide variant Dystonia 16 [RCV000373560] Chr2:178432169 [GRCh38]
Chr2:179296896 [GRCh37]
Chr2:2q31.2		 uncertain significance
NM_003690.5(PRKRA):c.*573_*575dup duplication Dystonic disorder [RCV000301893] Chr2:178431521..178431522 [GRCh38]
Chr2:179296248..179296249 [GRCh37]
Chr2:2q31.2		 benign
NM_003690.5(PRKRA):c.861C>T (p.Ser287=) single nucleotide variant Dystonia 16 [RCV000615771]|not provided [RCV001556543] Chr2:178432178 [GRCh38]
Chr2:179296905 [GRCh37]
Chr2:2q31.2		 likely benign
NM_003690.5(PRKRA):c.851G>T (p.Cys284Phe) single nucleotide variant Dystonia 16 [RCV000646155] Chr2:178432188 [GRCh38]
Chr2:179296915 [GRCh37]
Chr2:2q31.2		 uncertain significance
NM_003690.5(PRKRA):c.611C>G (p.Thr204Arg) single nucleotide variant Dystonia 16 [RCV000646156] Chr2:178436318 [GRCh38]
Chr2:179301045 [GRCh37]
Chr2:2q31.2		 uncertain significance
GRCh38/hg38 2q31.1-31.3(chr2:174236451-181188846)x1 copy number loss See cases [RCV000143597] Chr2:174236451..181188846 [GRCh38]
Chr2:175101179..182053573 [GRCh37]
Chr2:174809425..181761818 [NCBI36]
Chr2:2q31.1-31.3		 pathogenic
NM_003690.5(PRKRA):c.*198C>T single nucleotide variant Dystonia 16 [RCV000371098]|not provided [RCV001597096] Chr2:178431899 [GRCh38]
Chr2:179296626 [GRCh37]
Chr2:2q31.2		 benign
NM_003690.5(PRKRA):c.*180C>T single nucleotide variant Dystonia 16 [RCV000276536] Chr2:178431917 [GRCh38]
Chr2:179296644 [GRCh37]
Chr2:2q31.2		 uncertain significance
NM_003690.5(PRKRA):c.677T>A (p.Ile226Asn) single nucleotide variant Dystonia 16 [RCV000379417]|not provided [RCV001653610]|not specified [RCV002248618] Chr2:178436252 [GRCh38]
Chr2:179300979 [GRCh37]
Chr2:2q31.2		 benign|likely benign
NM_003690.5(PRKRA):c.*435ATTG[1] microsatellite Dystonic disorder [RCV000365167] Chr2:178431655..178431658 [GRCh38]
Chr2:179296382..179296385 [GRCh37]
Chr2:2q31.2		 benign
NM_003690.5(PRKRA):c.*3C>T single nucleotide variant Dystonia 16 [RCV000318859]|not provided [RCV001675829] Chr2:178432094 [GRCh38]
Chr2:179296821 [GRCh37]
Chr2:2q31.2		 benign
GRCh38/hg38 2q31.1-32.3(chr2:176086763-193201970)x1 copy number loss See cases [RCV000143484] Chr2:176086763..193201970 [GRCh38]
Chr2:176951491..194066696 [GRCh37]
Chr2:176659737..193774941 [NCBI36]
Chr2:2q31.1-32.3		 pathogenic
NM_003690.5(PRKRA):c.784+6A>T single nucleotide variant Dystonia 16 [RCV001079517]|not provided [RCV000488037] Chr2:178436139 [GRCh38]
Chr2:179300866 [GRCh37]
Chr2:2q31.2		 likely benign|conflicting interpretations of pathogenicity|uncertain significance
NM_003690.5(PRKRA):c.784+15T>C single nucleotide variant Dystonia 16 [RCV000279031] Chr2:178436130 [GRCh38]
Chr2:179300857 [GRCh37]
Chr2:2q31.2		 uncertain significance
NC_000002.11:g.(?_179296804)_(179456251_?)dup duplication Dystonia 16 [RCV000708061] Chr2:178432077..178591524 [GRCh38]
Chr2:179296804..179456251 [GRCh37]
Chr2:2q31.2		 uncertain significance
NM_003690.5(PRKRA):c.*31G>A single nucleotide variant Dystonia 16 [RCV001135060] Chr2:178432066 [GRCh38]
Chr2:179296793 [GRCh37]
Chr2:2q31.2		 likely benign
NM_003690.5(PRKRA):c.796G>A (p.Ala266Thr) single nucleotide variant Dystonia 16 [RCV001130039] Chr2:178432243 [GRCh38]
Chr2:179296970 [GRCh37]
Chr2:2q31.2		 conflicting interpretations of pathogenicity|uncertain significance
NM_003690.5(PRKRA):c.637T>C (p.Cys213Arg) single nucleotide variant Dystonia 16 [RCV000850587] Chr2:178436292 [GRCh38]
Chr2:179301019 [GRCh37]
Chr2:2q31.2		 uncertain significance
NM_003690.5(PRKRA):c.*655T>C single nucleotide variant Dystonia 16 [RCV001133566] Chr2:178431442 [GRCh38]
Chr2:179296169 [GRCh37]
Chr2:2q31.2		 uncertain significance
NM_003690.5(PRKRA):c.*576G>A single nucleotide variant Dystonia 16 [RCV001133567] Chr2:178431521 [GRCh38]
Chr2:179296248 [GRCh37]
Chr2:2q31.2		 uncertain significance
NM_003690.5(PRKRA):c.*200G>A single nucleotide variant Dystonia 16 [RCV001133569]|not provided [RCV001561469] Chr2:178431897 [GRCh38]
Chr2:179296624 [GRCh37]
Chr2:2q31.2		 benign|likely benign
NM_003690.5(PRKRA):c.*553A>G single nucleotide variant Dystonia 16 [RCV001133568] Chr2:178431544 [GRCh38]
Chr2:179296271 [GRCh37]
Chr2:2q31.2		 uncertain significance
NM_003690.5(PRKRA):c.784+237A>G single nucleotide variant not provided [RCV001562847] Chr2:178435908 [GRCh38]
Chr2:179300635 [GRCh37]
Chr2:2q31.2		 likely benign
NM_003690.5(PRKRA):c.654G>A (p.Leu218=) single nucleotide variant Dystonia 16 [RCV001130040] Chr2:178436275 [GRCh38]
Chr2:179301002 [GRCh37]
Chr2:2q31.2		 conflicting interpretations of pathogenicity|uncertain significance
NM_003690.5(PRKRA):c.800A>G (p.Asn267Ser) single nucleotide variant Dystonia 16 [RCV001233813] Chr2:178432239 [GRCh38]
Chr2:179296966 [GRCh37]
Chr2:2q31.2		 uncertain significance
NM_003690.5(PRKRA):c.*79G>A single nucleotide variant Dystonia 16 [RCV001135059] Chr2:178432018 [GRCh38]
Chr2:179296745 [GRCh37]
Chr2:2q31.2		 uncertain significance
NM_003690.5(PRKRA):c.610-291C>T single nucleotide variant not provided [RCV001580846] Chr2:178436610 [GRCh38]
Chr2:179301337 [GRCh37]
Chr2:2q31.2		 likely benign
NM_003690.5(PRKRA):c.610-1_610insGAATGCTGCTGAGAAATTTCTTGCCAAATTTAGTAATATTTCTCCAGAGAACCACATTTCTTTA insertion Dystonia 16 [RCV001355601] Chr2:178436319..178436320 [GRCh38]
Chr2:179301046..179301047 [GRCh37]
Chr2:2q31.2		 likely pathogenic
NM_003690.5(PRKRA):c.792G>C (p.Leu264=) single nucleotide variant Dystonia 16 [RCV001492593] Chr2:178432247 [GRCh38]
Chr2:179296974 [GRCh37]
Chr2:2q31.2		 likely benign
NM_003690.5(PRKRA):c.891T>C (p.Asp297=) single nucleotide variant Dystonia 16 [RCV001420044] Chr2:178432148 [GRCh38]
Chr2:179296875 [GRCh37]
Chr2:2q31.2		 likely benign
NM_003690.5(PRKRA):c.784+241T>A single nucleotide variant not provided [RCV001581846] Chr2:178435904 [GRCh38]
Chr2:179300631 [GRCh37]
Chr2:2q31.2		 likely benign
NM_003690.5(PRKRA):c.795C>A (p.Ser265Arg) single nucleotide variant Dystonia 16 [RCV001929742] Chr2:178432244 [GRCh38]
Chr2:179296971 [GRCh37]
Chr2:2q31.2		 uncertain significance
NM_003690.5(PRKRA):c.902A>G (p.Asn301Ser) single nucleotide variant Dystonia 16 [RCV001987261] Chr2:178432137 [GRCh38]
Chr2:179296864 [GRCh37]
Chr2:2q31.2		 uncertain significance
NM_003690.5(PRKRA):c.680A>G (p.Asn227Ser) single nucleotide variant Dystonia 16 [RCV002022974] Chr2:178436249 [GRCh38]
Chr2:179300976 [GRCh37]
Chr2:2q31.2		 uncertain significance
NM_003690.5(PRKRA):c.784+14T>A single nucleotide variant Dystonia 16 [RCV002152969] Chr2:178436131 [GRCh38]
Chr2:179300858 [GRCh37]
Chr2:2q31.2		 likely benign
NM_003690.5(PRKRA):c.840C>T (p.Pro280=) single nucleotide variant Dystonia 16 [RCV002199644] Chr2:178432199 [GRCh38]
Chr2:179296926 [GRCh37]
Chr2:2q31.2		 likely benign
NM_003690.5(PRKRA):c.784+15del deletion Dystonia 16 [RCV002083090] Chr2:178436130 [GRCh38]
Chr2:179300857 [GRCh37]
Chr2:2q31.2		 benign|likely benign
NM_003690.5(PRKRA):c.638G>T (p.Cys213Phe) single nucleotide variant Dystonia 16 [RCV002250264] Chr2:178436291 [GRCh38]
Chr2:179301018 [GRCh37]
Chr2:2q31.2		 pathogenic|likely pathogenic
NM_003690.5(PRKRA):c.923T>C (p.Ile308Thr) single nucleotide variant Dystonia 16 [RCV003130337] Chr2:178432116 [GRCh38]
Chr2:179296843 [GRCh37]
Chr2:2q31.2		 uncertain significance
NM_003690.5(PRKRA):c.784+15dup duplication Dystonia 16 [RCV003015104] Chr2:178436129..178436130 [GRCh38]
Chr2:179300856..179300857 [GRCh37]
Chr2:2q31.2		 benign
NM_003690.5(PRKRA):c.616G>A (p.Val206Ile) single nucleotide variant Dystonia 16 [RCV002805809] Chr2:178436313 [GRCh38]
Chr2:179301040 [GRCh37]
Chr2:2q31.2		 uncertain significance
NM_003690.5(PRKRA):c.861C>A (p.Ser287=) single nucleotide variant Dystonia 16 [RCV003057362] Chr2:178432178 [GRCh38]
Chr2:179296905 [GRCh37]
Chr2:2q31.2		 uncertain significance
NM_003690.5(PRKRA):c.854A>G (p.His285Arg) single nucleotide variant Dystonia 16 [RCV002801745] Chr2:178432185 [GRCh38]
Chr2:179296912 [GRCh37]
Chr2:2q31.2		 uncertain significance
NM_003690.5(PRKRA):c.785-14A>C single nucleotide variant Dystonia 16 [RCV002962818] Chr2:178432268 [GRCh38]
Chr2:179296995 [GRCh37]
Chr2:2q31.2		 likely benign
NM_003690.5(PRKRA):c.610-18T>G single nucleotide variant Dystonia 16 [RCV003089280] Chr2:178436337 [GRCh38]
Chr2:179301064 [GRCh37]
Chr2:2q31.2		 likely benign
NM_003690.5(PRKRA):c.817C>T (p.Leu273Phe) single nucleotide variant not provided [RCV003225483] Chr2:178432222 [GRCh38]
Chr2:179296949 [GRCh37]
Chr2:2q31.2		 uncertain significance
NM_003690.5(PRKRA):c.699C>T (p.Leu233=) single nucleotide variant Dystonia 16 [RCV003615754] Chr2:178436230 [GRCh38]
Chr2:179300957 [GRCh37]
Chr2:2q31.2		 likely benign
NM_003690.5(PRKRA):c.634G>C (p.Gly212Arg) single nucleotide variant Inborn genetic diseases [RCV004515254] Chr2:178436295 [GRCh38]
Chr2:179301022 [GRCh37]
Chr2:2q31.2		 uncertain significance
NM_003690.5(PRKRA):c.785-10G>A single nucleotide variant PRKRA-related condition [RCV003967245] Chr2:178432264 [GRCh38]
Chr2:179296991 [GRCh37]
Chr2:2q31.2		 likely benign
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:594
Count of miRNA genes:485
Interacting mature miRNAs:515
Transcripts:ENST00000415236, ENST00000420672, ENST00000436616, ENST00000442036, ENST00000450044, ENST00000453026, ENST00000454488
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 188 219 523 4 612 3 476 104 667 42 556 603 5 81 374
Low 2193 2471 1180 597 1033 437 3870 2079 3046 370 899 1003 169 1 1123 2403 5 2
Below cutoff 48 299 23 23 304 25 11 14 21 7 5 7 11

Sequence

Nucleotide Sequences
RefSeq Transcripts NR_110204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_110205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_110206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC009948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL520497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI915242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM996025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX371397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX538254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD676753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN415424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA520566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DT216517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OA987383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OA987384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OA987385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OA987386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OA987387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000415236
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2178,414,023 - 178,432,282 (+)Ensembl
RefSeq Acc Id: ENST00000420672
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2178,413,939 - 178,430,824 (+)Ensembl
RefSeq Acc Id: ENST00000436616
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2178,413,654 - 178,434,091 (+)Ensembl
RefSeq Acc Id: ENST00000442036
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2178,413,987 - 178,419,123 (+)Ensembl
RefSeq Acc Id: ENST00000450044
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2178,413,968 - 178,431,341 (+)Ensembl
RefSeq Acc Id: ENST00000453026
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2178,413,635 - 178,440,243 (+)Ensembl
RefSeq Acc Id: ENST00000454488
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2178,413,925 - 178,434,091 (+)Ensembl
RefSeq Acc Id: ENST00000659708
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2178,413,925 - 178,434,101 (+)Ensembl
RefSeq Acc Id: ENST00000660374
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2178,413,945 - 178,432,227 (+)Ensembl
RefSeq Acc Id: ENST00000661271
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2178,413,853 - 178,434,091 (+)Ensembl
RefSeq Acc Id: ENST00000662743
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2178,413,979 - 178,434,057 (+)Ensembl
RefSeq Acc Id: ENST00000663803
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2178,413,677 - 178,435,210 (+)Ensembl
RefSeq Acc Id: ENST00000665039
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2178,413,665 - 178,434,067 (+)Ensembl
RefSeq Acc Id: ENST00000666480
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2178,413,677 - 178,433,024 (+)Ensembl
RefSeq Acc Id: ENST00000668138
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2178,413,945 - 178,432,294 (+)Ensembl
RefSeq Acc Id: ENST00000671256
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2178,430,596 - 178,439,857 (+)Ensembl
RefSeq Acc Id: ENST00000671679
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2178,430,246 - 178,434,502 (+)Ensembl
RefSeq Acc Id: ENST00000684892
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2178,413,925 - 178,431,692 (+)Ensembl
RefSeq Acc Id: ENST00000686412
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2178,413,975 - 178,415,577 (+)Ensembl
RefSeq Acc Id: ENST00000688261
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2178,413,671 - 178,432,324 (+)Ensembl
RefSeq Acc Id: ENST00000688877
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2178,413,702 - 178,432,324 (+)Ensembl
RefSeq Acc Id: ENST00000690304
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2178,413,975 - 178,415,577 (+)Ensembl
RefSeq Acc Id: ENST00000690483
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2178,413,654 - 178,434,096 (+)Ensembl
RefSeq Acc Id: ENST00000691078
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2178,413,674 - 178,434,094 (+)Ensembl
RefSeq Acc Id: ENST00000691493
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2178,413,972 - 178,434,091 (+)Ensembl
RefSeq Acc Id: ENST00000691722
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2178,413,894 - 178,434,091 (+)Ensembl
RefSeq Acc Id: ENST00000692047
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2178,413,925 - 178,432,324 (+)Ensembl
RefSeq Acc Id: ENST00000700940
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2178,413,969 - 178,432,323 (+)Ensembl
RefSeq Acc Id: ENST00000701108
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2178,413,969 - 178,432,324 (+)Ensembl
RefSeq Acc Id: ENST00000701496
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2178,413,680 - 178,432,343 (+)Ensembl
RefSeq Acc Id: ENST00000701883
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2178,413,979 - 178,440,243 (+)Ensembl
RefSeq Acc Id: ENST00000701929
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2178,413,677 - 178,434,091 (+)Ensembl
RefSeq Acc Id: ENST00000702167
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2178,413,985 - 178,432,324 (+)Ensembl
RefSeq Acc Id: ENST00000702484
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2178,413,975 - 178,434,091 (+)Ensembl
RefSeq Acc Id: ENST00000702755
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2178,413,728 - 178,434,098 (+)Ensembl
RefSeq Acc Id: ENST00000702767
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2178,413,925 - 178,434,091 (+)Ensembl
RefSeq Acc Id: NR_110204
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382178,413,659 - 178,440,243 (+)NCBI
T2T-CHM13v2.02178,896,451 - 178,923,035 (+)NCBI
Sequence:
RefSeq Acc Id: NR_110205
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382178,413,659 - 178,434,091 (+)NCBI
T2T-CHM13v2.02178,896,451 - 178,916,883 (+)NCBI
Sequence:
RefSeq Acc Id: NR_110206
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382178,413,659 - 178,434,091 (+)NCBI
T2T-CHM13v2.02178,896,451 - 178,916,883 (+)NCBI
Sequence:
Promoters
RGD ID:15095518
Promoter ID:EPDNEWNC_H345
Type:initiation region
Name:PRKRA-AS1_1
Description:PRKRA antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:54059]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh382178,413,950 - 178,414,010EPDNEWNC

Additional Information

Database Acc Id Source(s)
COSMIC CHROMR COSMIC
Ensembl Genes ENSG00000223960 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000436616 ENTREZGENE
  ENST00000453026 ENTREZGENE
  ENST00000691078 ENTREZGENE
GTEx ENSG00000223960 GTEx
HGNC ID HGNC:54059 ENTREZGENE
Human Proteome Map CHROMR Human Proteome Map
NCBI Gene PRKRA-AS1 ENTREZGENE
RNAcentral URS000075A525 RNACentral
  URS000075ABC6 RNACentral
  URS000075DD89 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-06-11 CHROMR  cholesterol induced regulator of metabolism RNA  PRKRA-AS1  PRKRA antisense RNA 1  Symbol and/or name change 5135510 APPROVED