Ly49i9 (Ly49 inhibitory receptor 9) - Rat Genome Database

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Gene: Ly49i9 (Ly49 inhibitory receptor 9) Rattus norvegicus
Analyze
Symbol: Ly49i9
Name: Ly49 inhibitory receptor 9
RGD ID: 1359643
Description: INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; bisphenol A
Type: protein-coding
RefSeq Status: PROVISIONAL
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
RGSC_v3.44167,706,243 - 167,719,500 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14167,849,255 - 167,964,436 (-)NCBI
Celera4152,523,715 - 152,536,973 (-)NCBICelera
Cytogenetic Map4q42NCBI


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. The genes and gene organization of the Ly49 region of the rat natural killer cell gene complex. Nylenna O, etal., Eur J Immunol 2005 Jan;35(1):261-72.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:122
Count of miRNA genes:102
Interacting mature miRNAs:107
Transcripts:ENSRNOT00000075833
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001009496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AY649839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: NM_001009496   ⟹   NP_001009496
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
RGSC_v3.44167,706,243 - 167,719,500 (-)RGD
Celera4152,523,715 - 152,536,973 (-)RGD
Protein Sequences
Protein RefSeqs NP_001009496 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAV74513 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_001009496   ⟸   NM_001009496
- UniProtKB: Q5MPW5 (UniProtKB/TrEMBL)
Protein Domains
Ly49-like N-terminal


Additional Information

Database Acc Id Source(s)
Gene3D-CATH 3.10.100.10 UniProtKB/TrEMBL
InterPro C-type_lectin-like UniProtKB/TrEMBL
  C-type_lectin_fold UniProtKB/TrEMBL
  Ly49 UniProtKB/TrEMBL
NCBI Gene 494205 ENTREZGENE
PANTHER KILLER CELL LECTIN-LIKE RECEPTOR 2 UniProtKB/TrEMBL
  KILLER CELL LECTIN-LIKE RECEPTOR, SUBFAMILY A, MEMBER 17 UniProtKB/TrEMBL
Pfam Ly49 UniProtKB/TrEMBL
PhenoGen Ly49i9 PhenoGen
Superfamily-SCOP C-type_lectin_fold UniProtKB/TrEMBL
UniProt Q5MPW5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-07-29 Ly49i9  Ly49 inhibitory receptor 9      Symbol and Name status set to provisional 70820 PROVISIONAL