CEACAMP3 (CEA cell adhesion molecule pseudogene 3) - Rat Genome Database

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Gene: CEACAMP3 (CEA cell adhesion molecule pseudogene 3) Homo sapiens
Analyze
Symbol: CEACAMP3
Name: CEA cell adhesion molecule pseudogene 3
RGD ID: 1354278
HGNC Page HGNC:1825
Description: INTERACTS WITH sodium arsenite
Type: pseudo (Ensembl: transcribed_unprocessed_pseudogene)
RefSeq Status: INFERRED
Previously known as: carcinoembryonic antigen related cell adhesion molecule pseudogene 3; CEACAM24P; CGM10
Related Functional Gene: CEACAM3  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381941,601,256 - 41,601,503 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1941,599,735 - 41,605,221 (+)EnsemblGRCh38hg38GRCh38
GRCh371942,107,611 - 42,107,858 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361946,799,451 - 46,799,698 (+)NCBINCBI36Build 36hg18NCBI36
Celera1938,907,481 - 38,907,728 (+)NCBICelera
Cytogenetic Map19q13.2NCBI
HuRef1938,539,482 - 38,539,729 (+)NCBIHuRef
CHM1_11942,106,791 - 42,107,038 (+)NCBICHM1_1
T2T-CHM13v2.01944,423,020 - 44,423,267 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:1427854   PMID:7851895   PMID:7851896  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:248
Count of miRNA genes:205
Interacting mature miRNAs:213
Transcripts:ENST00000473762, ENST00000483806
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 4
Low 49 240 9 1 497 1 64 4 84 3 56 68 44 22 1
Below cutoff 801 1188 581 210 865 139 1566 486 1258 81 627 684 71 661 921

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000473762
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1941,602,243 - 41,605,984 (+)Ensembl
RefSeq Acc Id: ENST00000483806
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1941,599,735 - 41,605,221 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC CEACAMP3 COSMIC
Ensembl Genes ENSG00000239736 Ensembl
GTEx ENSG00000239736 GTEx
HGNC ID HGNC:1825 ENTREZGENE
Human Proteome Map CEACAMP3 Human Proteome Map
NCBI Gene 1092 ENTREZGENE
PharmGKB PA26369 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-08-27 CEACAMP3  CEA cell adhesion molecule pseudogene 3  CEACAMP3  carcinoembryonic antigen related cell adhesion molecule pseudogene 3  Symbol and/or name change 5135510 APPROVED
2016-01-19 CEACAMP3  carcinoembryonic antigen related cell adhesion molecule pseudogene 3    carcinoembryonic antigen-related cell adhesion molecule pseudogene 3  Symbol and/or name change 5135510 APPROVED