KRT17P1 (keratin 17 pseudogene 1) - Rat Genome Database

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Pathways
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Gene: KRT17P1 (keratin 17 pseudogene 1) Homo sapiens
Analyze
Symbol: KRT17P1
Name: keratin 17 pseudogene 1
RGD ID: 1353793
HGNC Page HGNC:6428
Description: INTERACTS WITH lipopolysaccharide; S-(1,2-dichlorovinyl)-L-cysteine
Type: pseudo (Ensembl: transcribed_unprocessed_pseudogene)
RefSeq Status: VALIDATED
Related Functional Gene: KRT17  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381716,840,787 - 16,845,872 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1716,840,895 - 16,845,815 (-)EnsemblGRCh38hg38GRCh38
GRCh371716,744,101 - 16,749,186 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361716,685,768 - 16,689,954 (-)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map17p11.2NCBI
HuRef1716,500,885 - 16,502,210 (-)NCBIHuRef
CHM1_11716,754,992 - 16,758,965 (-)NCBICHM1_1
T2T-CHM13v2.01716,786,542 - 16,791,959 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:1281771   PMID:11997339   PMID:16344560  


Genomics


Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 17p11.2(chr17:16361086-18219405)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000054335]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000054335]|See cases [RCV000054335] Chr17:16361086..18219405 [GRCh38]
Chr17:16264400..18122719 [GRCh37]
Chr17:16205125..18063444 [NCBI36]
Chr17:17p11.2		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1663
Count of miRNA genes:820
Interacting mature miRNAs:975
Transcripts:ENST00000340966, ENST00000399211, ENST00000577449, ENST00000580363, ENST00000582047, ENST00000582224
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2 6 3 2
Low 14 34 7 41 54 1 657 67 1072 23 341 43 42 1 342
Below cutoff 776 1291 615 234 736 117 2097 733 1642 99 699 560 123 440 1495 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000399211
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1716,840,895 - 16,845,815 (-)Ensembl
RefSeq Acc Id: ENST00000577449
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1716,843,487 - 16,845,599 (-)Ensembl
RefSeq Acc Id: ENST00000580363
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1716,843,865 - 16,845,881 (-)Ensembl
RefSeq Acc Id: ENST00000582047
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1716,841,539 - 16,842,449 (-)Ensembl
RefSeq Acc Id: ENST00000582224
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1716,842,950 - 16,844,570 (-)Ensembl
RefSeq Acc Id: NR_146392
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381716,840,787 - 16,845,872 (-)NCBI
T2T-CHM13v2.01716,786,542 - 16,791,959 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC KRT17P1 COSMIC
Ensembl Genes ENSG00000131885 Ensembl
GTEx ENSG00000131885 GTEx
HGNC ID HGNC:6428 ENTREZGENE
Human Proteome Map KRT17P1 Human Proteome Map
NCBI Gene KRT17P1 ENTREZGENE
PharmGKB PA30215 PharmGKB