IGKV1-35 (immunoglobulin kappa variable 1-35 (pseudogene)) - Rat Genome Database

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Gene: IGKV1-35 (immunoglobulin kappa variable 1-35 (pseudogene)) Homo sapiens
Analyze
Symbol: IGKV1-35
Name: immunoglobulin kappa variable 1-35 (pseudogene)
RGD ID: 1353789
HGNC Page HGNC:5738
Description:
Type: pseudo (Ensembl: IG_V_pseudogene)
RefSeq Status: VALIDATED
Previously known as: IGKV135; O16
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38289,286,696 - 89,287,170 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl289,286,689 - 89,286,973 (-)EnsemblGRCh38hg38GRCh38
GRCh37289,586,453 - 89,586,927 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36289,367,568 - 89,368,042 (-)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map2p11.2NCBI
HuRef288,304,724 - 88,305,198 (-)NCBIHuRef
CHM1_1289,515,810 - 89,516,284 (-)NCBICHM1_1
T2T-CHM13v2.0289,296,033 - 89,296,507 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:8011175  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:256
Count of miRNA genes:217
Interacting mature miRNAs:222
Transcripts:ENST00000517744
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 3 1 1
Low 297 46 46 106 261 7 1 1 4 14 119 106 9 2
Below cutoff 349 285 119 68 359 34 134 34 47 17 78 266 34 92 72

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000517744
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl289,286,689 - 89,286,973 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC IGKV1-35 COSMIC
Ensembl Genes ENSG00000253461 Ensembl
GTEx ENSG00000253461 GTEx
HGNC ID HGNC:5738 ENTREZGENE
Human Proteome Map IGKV1-35 Human Proteome Map
NCBI Gene 28932 ENTREZGENE
PharmGKB PA35321 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 IGKV1-35  immunoglobulin kappa variable 1-35 (pseudogene)  IGKV1-35  immunoglobulin kappa variable 1-35 pseudogene  Symbol and/or name change 5135510 APPROVED