TRBV5-3 (T cell receptor beta variable 5-3 (non-functional)) - Rat Genome Database

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Pathways
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Gene: TRBV5-3 (T cell receptor beta variable 5-3 (non-functional)) Homo sapiens
Analyze
No known orthologs.
Symbol: TRBV5-3
Name: T cell receptor beta variable 5-3 (non-functional)
RGD ID: 1353738
HGNC Page HGNC:12220
Description: Predicted to be involved in cell surface receptor signaling pathway. Predicted to be located in membrane. Predicted to be part of T cell receptor complex. Predicted to be active in plasma membrane.
Type: pseudo (Ensembl: TR_V_gene)
RefSeq Status: VALIDATED
Previously known as: TCRBV5S3; TCRBV5S5P; TRBV53
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387142,389,202 - 142,389,668 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7142,389,202 - 142,389,668 (+)EnsemblGRCh38hg38GRCh38
GRCh377142,242,281 - 142,242,747 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367141,757,668 - 141,758,134 (+)NCBINCBI36Build 36hg18NCBI36
Celera7136,888,145 - 136,888,611 (+)NCBICelera
Cytogenetic Map7q34NCBI
HuRef7136,405,256 - 136,405,722 (+)NCBIHuRef
CHM1_17142,023,174 - 142,023,640 (+)NCBICHM1_1
T2T-CHM13v2.07143,725,917 - 143,726,383 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27141,449,398 - 141,449,864 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:1660526   PMID:8650574   PMID:21873635  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:239
Count of miRNA genes:228
Interacting mature miRNAs:238
Transcripts:ENST00000390362
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH103934  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh377142,243,970 - 142,244,101UniSTSGRCh37
Build 367141,756,314 - 141,756,445RGDNCBI36
Celera7136,886,791 - 136,886,922RGD
Cytogenetic Map7q34UniSTS
HuRef7136,403,902 - 136,404,033UniSTS
CRA_TCAGchr7v27141,448,044 - 141,448,175UniSTS
GeneMap99-GB4 RH Map7651.77UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 12 53 10 1 121 1 11 5 9 7 239 19 2 1
Below cutoff 239 430 156 34 536 18 261 89 175 49 179 248 16 117 146

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000390362   ⟹   ENSP00000374885
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7142,389,202 - 142,389,668 (+)Ensembl
Protein Sequences
GenBank Protein A0A0A0MS03 (Get FASTA)   NCBI Sequence Viewer  
  CAA43679 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000374885.1
  ENSP00000488267.1
Reference Protein Sequences
RefSeq Acc Id: ENSP00000374885   ⟸   ENST00000390362
Protein Domains
Ig-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0A0MS03-F1-model_v2 AlphaFold A0A0A0MS03 1-114 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:12220 AgrOrtholog
COSMIC TRBV5-3 COSMIC
Ensembl Genes ENSG00000211715 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSG00000282148 UniProtKB/TrEMBL
Ensembl Transcript ENST00000390362.1 UniProtKB/Swiss-Prot
  ENST00000634123.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000211715 GTEx
  ENSG00000282148 GTEx
HGNC ID HGNC:12220 ENTREZGENE
Human Proteome Map TRBV5-3 Human Proteome Map
InterPro Ig-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_V-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 28612 ENTREZGENE
PANTHER T CELL RECEPTOR BETA VARIABLE 5-5-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  T-CELL RECEPTOR BETA CHAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam V-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA36900 PharmGKB
PROSITE IG_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART IGv UniProtKB/Swiss-Prot
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0A0MS03 ENTREZGENE
  A0A0J9YX65_HUMAN UniProtKB/TrEMBL
  TVB53_HUMAN UniProtKB/Swiss-Prot