Gene-Chemical Interaction Annotations
Click to see Annotation Detail View
References
References - curated
Genomics
Variants
Clinical Variants
miRNA Target Status
Predicted Target Of
Summary Value | Count of predictions: | 621 | Count of miRNA genes: | 484 | Interacting mature miRNAs: | 522 | Transcripts: | ENST00000329015 | Prediction methods: | Miranda, Rnahybrid | Result types: | miRGate_prediction | |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
Markers in Region
WI-18470 |
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SHGC-52060 |
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Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPMLow: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM
alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | sensory system | adipose tissue | appendage | |
High | |||||||||||||||
Medium | 5 | 20 | 4 | 39 | 4 | 9 | 5 | 7 | 65 | 3 | 3 | ||||
Low | 105 | 335 | 260 | 7 | 357 | 6 | 34 | 154 | 1265 | 9 | 90 | 445 | 2 | 45 | 23 |
Below cutoff | 976 | 935 | 592 | 242 | 755 | 133 | 1759 | 620 | 1468 | 116 | 609 | 443 | 111 | 488 | 1035 |
Sequence
Nucleotide Sequences
RefSeq Acc Id: | ENST00000329015 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NR_027243 | ||||||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||||||
Type: | NON-CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
Protein Sequences
GenBank Protein | BAC03519 | (Get FASTA) | NCBI Sequence Viewer |
EAX09577 | (Get FASTA) | NCBI Sequence Viewer | |
Q8N2C9 | (Get FASTA) | NCBI Sequence Viewer |