IGHV3-57 (immunoglobulin heavy variable 3-57 (pseudogene)) - Rat Genome Database

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Gene: IGHV3-57 (immunoglobulin heavy variable 3-57 (pseudogene)) Homo sapiens
Analyze
Symbol: IGHV3-57
Name: immunoglobulin heavy variable 3-57 (pseudogene)
RGD ID: 1353392
HGNC Page HGNC:5612
Description:
Type: pseudo (Ensembl: IG_V_pseudogene)
RefSeq Status: VALIDATED
Previously known as: 3-57P; IGHV357
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3814106,618,909 - 106,619,214 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl14106,618,894 - 106,619,173 (-)EnsemblGRCh38hg38GRCh38
GRCh3714107,074,922 - 107,075,227 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3614106,145,967 - 106,146,272 (-)NCBINCBI36Build 36hg18NCBI36
Celera1487,012,853 - 87,013,158 (-)NCBICelera
Cytogenetic Map14q32.33NCBI
CHM1_114106,955,865 - 106,956,170 (-)NCBICHM1_1
T2T-CHM13v2.014100,939,428 - 100,939,733 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:3097326  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:252
Count of miRNA genes:236
Interacting mature miRNAs:250
Transcripts:ENST00000520143
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 15 4 8 38 1 1 1 2 9 8 1
Below cutoff 245 88 45 73 248 5 28 9 16 7 53 122 68 29 17

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000520143
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl14106,618,894 - 106,619,173 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC IGHV3-57 COSMIC
Ensembl Genes ENSG00000253759 Ensembl, ENTREZGENE
GTEx ENSG00000253759 GTEx
HGNC ID HGNC:5612 ENTREZGENE
Human Proteome Map IGHV3-57 Human Proteome Map
NCBI Gene 28418 ENTREZGENE
PharmGKB PA35211 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 IGHV3-57  immunoglobulin heavy variable 3-57 (pseudogene)  IGHV3-57  immunoglobulin heavy variable 3-57 pseudogene  Symbol and/or name change 5135510 APPROVED