ZSCAN23 (zinc finger and SCAN domain containing 23) - Rat Genome Database

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Gene: ZSCAN23 (zinc finger and SCAN domain containing 23) Homo sapiens
Analyze
Symbol: ZSCAN23
Name: zinc finger and SCAN domain containing 23
RGD ID: 1353335
HGNC Page HGNC:21193
Description: Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: dJ29K1.3; dJ29K1.3.1; FLJ99276; LOC105374997; MGC126606; MGC126608; uncharacterized LOC105374997; zinc finger and SCAN domain-containing protein 23; zinc finger protein 390; zinc finger protein 453; ZNF390; ZNF453
RGD Orthologs
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38628,421,400 - 28,443,491 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl628,431,930 - 28,443,502 (-)EnsemblGRCh38hg38GRCh38
GRCh37628,400,432 - 28,411,268 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36628,482,851 - 28,519,256 (-)NCBINCBI36Build 36hg18NCBI36
Celera630,006,860 - 30,017,706 (-)NCBICelera
Cytogenetic Map6p22.1NCBI
HuRef628,206,244 - 28,217,065 (-)NCBIHuRef
CHM1_1628,402,835 - 28,413,681 (-)NCBICHM1_1
T2T-CHM13v2.0628,290,130 - 28,314,932 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
megacolon  (IAGP)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:14574404   PMID:14702039   PMID:15489334   PMID:21873635   PMID:23376485   PMID:23414517   PMID:26186194   PMID:28473536   PMID:28514442   PMID:29954144   PMID:32296183  
PMID:33187986   PMID:33961781   PMID:36949045   PMID:38226836  


Genomics

Comparative Map Data
ZSCAN23
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38628,421,400 - 28,443,491 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl628,431,930 - 28,443,502 (-)EnsemblGRCh38hg38GRCh38
GRCh37628,400,432 - 28,411,268 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36628,482,851 - 28,519,256 (-)NCBINCBI36Build 36hg18NCBI36
Celera630,006,860 - 30,017,706 (-)NCBICelera
Cytogenetic Map6p22.1NCBI
HuRef628,206,244 - 28,217,065 (-)NCBIHuRef
CHM1_1628,402,835 - 28,413,681 (-)NCBICHM1_1
T2T-CHM13v2.0628,290,130 - 28,314,932 (-)NCBIT2T-CHM13v2.0
Zscan23
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495546513,714,013 - 13,728,875 (-)NCBIChiLan1.0ChiLan1.0
ZSCAN23
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2543,043,198 - 43,065,286 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1639,035,300 - 39,066,274 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0628,228,656 - 28,251,747 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1628,903,986 - 28,921,949 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl628,860,912 - 28,919,353 (-)Ensemblpanpan1.1panPan2
LOC100685292
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13525,526,779 - 25,556,420 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3525,520,752 - 25,533,507 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3525,397,162 - 25,414,110 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0 Ensembl3525,838,172 - 25,854,848 (-)EnsemblROS_Cfam_1.0 Ensembl
Zscan23
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494628,829,526 - 28,838,574 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936914610,293 - 619,467 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936914610,314 - 616,157 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZSCAN23
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl722,215,053 - 22,229,218 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1722,216,543 - 22,229,304 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2724,158,678 - 24,173,224 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZSCAN23
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11744,119,840 - 44,144,330 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1744,120,081 - 44,129,270 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604428,120,579 - 28,139,203 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zscan23
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475624,671,033 - 24,713,654 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475624,667,952 - 24,713,682 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ZSCAN23
15 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 6p22.3-21.33(chr6:18120520-30767516)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052180]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052180]|See cases [RCV000052180] Chr6:18120520..30767516 [GRCh38]
Chr6:18120751..30735293 [GRCh37]
Chr6:18228730..30843272 [NCBI36]
Chr6:6p22.3-21.33		 pathogenic
NM_001012455.1(ZSCAN23):c.1159G>A (p.Glu387Lys) single nucleotide variant Malignant melanoma [RCV000067250] Chr6:28434476 [GRCh38]
Chr6:28402253 [GRCh37]
Chr6:28510232 [NCBI36]
Chr6:6p22.1		 not provided
GRCh38/hg38 6p22.2-22.1(chr6:26280579-28727313)x3 copy number gain See cases [RCV000133692] Chr6:26280579..28727313 [GRCh38]
Chr6:26280807..28695090 [GRCh37]
Chr6:26388786..28803069 [NCBI36]
Chr6:6p22.2-22.1		 uncertain significance
GRCh38/hg38 6p25.2-21.33(chr6:3224310-30657190)x3 copy number gain See cases [RCV000138956] Chr6:3224310..30657190 [GRCh38]
Chr6:3224544..30624967 [GRCh37]
Chr6:3169543..30732946 [NCBI36]
Chr6:6p25.2-21.33		 pathogenic
GRCh38/hg38 6p25.3-12.3(chr6:156974-46789291)x3 copy number gain See cases [RCV000143497] Chr6:156974..46789291 [GRCh38]
Chr6:156974..46757028 [GRCh37]
Chr6:101974..46864987 [NCBI36]
Chr6:6p25.3-12.3		 pathogenic
GRCh37/hg19 6p25.3-q27(chr6:156975-170919482)x3 copy number gain See cases [RCV000512067] Chr6:156975..170919482 [GRCh37]
Chr6:6p25.3-q27		 pathogenic
GRCh37/hg19 6p25.3-q27(chr6:156975-170919482) copy number gain See cases [RCV000510595] Chr6:156975..170919482 [GRCh37]
Chr6:6p25.3-q27		 pathogenic
NM_001012455.2(ZSCAN23):c.508G>C (p.Glu170Gln) single nucleotide variant not specified [RCV004328882] Chr6:28435508 [GRCh38]
Chr6:28403285 [GRCh37]
Chr6:6p22.1		 uncertain significance
NM_001012455.2(ZSCAN23):c.826C>G (p.Pro276Ala) single nucleotide variant not specified [RCV004314675] Chr6:28434809 [GRCh38]
Chr6:28402586 [GRCh37]
Chr6:6p22.1		 uncertain significance
GRCh37/hg19 6p25.3-q27(chr6:60107-171054786)x3 copy number gain not provided [RCV000745400] Chr6:60107..171054786 [GRCh37]
Chr6:6p25.3-q27		 pathogenic
GRCh37/hg19 6p25.3-q27(chr6:165632-170919470)x3 copy number gain not provided [RCV000745404] Chr6:165632..170919470 [GRCh37]
Chr6:6p25.3-q27		 pathogenic
GRCh37/hg19 6p25.3-q27(chr6:108666-170980171)x3 copy number gain not provided [RCV000745403] Chr6:108666..170980171 [GRCh37]
Chr6:6p25.3-q27		 pathogenic
GRCh37/hg19 6p22.1-21.32(chr6:28130359-32108367)x3 copy number gain not provided [RCV000745592] Chr6:28130359..32108367 [GRCh37]
Chr6:6p22.1-21.32		 uncertain significance
NM_001012455.2(ZSCAN23):c.839A>C (p.Asp280Ala) single nucleotide variant not specified [RCV004303646] Chr6:28434796 [GRCh38]
Chr6:28402573 [GRCh37]
Chr6:6p22.1		 uncertain significance
NC_000006.11:g.28005012_31683185del deletion Megacolon [RCV001290055] Chr6:28005012..31683185 [GRCh37]
Chr6:6p22.1-21.33		 likely pathogenic
NM_001012455.2(ZSCAN23):c.647A>T (p.Gln216Leu) single nucleotide variant not specified [RCV004133133] Chr6:28434988 [GRCh38]
Chr6:28402765 [GRCh37]
Chr6:6p22.1		 likely benign
NM_001012455.2(ZSCAN23):c.335G>A (p.Arg112His) single nucleotide variant not specified [RCV004232284] Chr6:28435932 [GRCh38]
Chr6:28403709 [GRCh37]
Chr6:6p22.1		 likely benign
NM_001012455.2(ZSCAN23):c.1166G>A (p.Ser389Asn) single nucleotide variant not specified [RCV004147835] Chr6:28434469 [GRCh38]
Chr6:28402246 [GRCh37]
Chr6:6p22.1		 uncertain significance
NM_001012455.2(ZSCAN23):c.79G>A (p.Glu27Lys) single nucleotide variant not specified [RCV004142852] Chr6:28436188 [GRCh38]
Chr6:28403965 [GRCh37]
Chr6:6p22.1		 uncertain significance
NM_001012455.2(ZSCAN23):c.740G>A (p.Arg247Lys) single nucleotide variant not specified [RCV004237774] Chr6:28434895 [GRCh38]
Chr6:28402672 [GRCh37]
Chr6:6p22.1		 uncertain significance
NM_001012455.2(ZSCAN23):c.658A>G (p.Ile220Val) single nucleotide variant not specified [RCV004178861] Chr6:28434977 [GRCh38]
Chr6:28402754 [GRCh37]
Chr6:6p22.1		 uncertain significance
NM_001012455.2(ZSCAN23):c.695G>A (p.Arg232His) single nucleotide variant not specified [RCV004177407] Chr6:28434940 [GRCh38]
Chr6:28402717 [GRCh37]
Chr6:6p22.1		 likely benign
NM_001012455.2(ZSCAN23):c.73G>C (p.Glu25Gln) single nucleotide variant not specified [RCV004299178] Chr6:28436194 [GRCh38]
Chr6:28403971 [GRCh37]
Chr6:6p22.1		 uncertain significance
NM_001012455.2(ZSCAN23):c.746A>G (p.Tyr249Cys) single nucleotide variant not specified [RCV004345937] Chr6:28434889 [GRCh38]
Chr6:28402666 [GRCh37]
Chr6:6p22.1		 uncertain significance
NM_001012455.2(ZSCAN23):c.1151C>T (p.Pro384Leu) single nucleotide variant not specified [RCV004358636] Chr6:28434484 [GRCh38]
Chr6:28402261 [GRCh37]
Chr6:6p22.1		 uncertain significance
NM_001012455.2(ZSCAN23):c.236C>G (p.Pro79Arg) single nucleotide variant not specified [RCV004487747] Chr6:28436031 [GRCh38]
Chr6:28403808 [GRCh37]
Chr6:6p22.1		 uncertain significance
NM_001012455.2(ZSCAN23):c.782A>G (p.Asn261Ser) single nucleotide variant not specified [RCV004487749] Chr6:28434853 [GRCh38]
Chr6:28402630 [GRCh37]
Chr6:6p22.1		 uncertain significance
NM_001012455.2(ZSCAN23):c.796G>A (p.Glu266Lys) single nucleotide variant not specified [RCV004487750] Chr6:28434839 [GRCh38]
Chr6:28402616 [GRCh37]
Chr6:6p22.1		 uncertain significance
NM_001012455.2(ZSCAN23):c.922A>T (p.Ser308Cys) single nucleotide variant not specified [RCV004487752] Chr6:28434713 [GRCh38]
Chr6:28402490 [GRCh37]
Chr6:6p22.1		 uncertain significance
NM_001012455.2(ZSCAN23):c.1139G>A (p.Arg380Gln) single nucleotide variant not specified [RCV004487746] Chr6:28434496 [GRCh38]
Chr6:28402273 [GRCh37]
Chr6:6p22.1		 uncertain significance
NM_001012455.2(ZSCAN23):c.446A>C (p.Lys149Thr) single nucleotide variant not specified [RCV004487748] Chr6:28435570 [GRCh38]
Chr6:28403347 [GRCh37]
Chr6:6p22.1		 uncertain significance
NM_001012455.2(ZSCAN23):c.804G>C (p.Gln268His) single nucleotide variant not specified [RCV004487751] Chr6:28434831 [GRCh38]
Chr6:28402608 [GRCh37]
Chr6:6p22.1		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1049
Count of miRNA genes:670
Interacting mature miRNAs:740
Transcripts:ENST00000289788, ENST00000481983, ENST00000486481
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 2 4 1 1 1 2 2 27 12 21 8
Low 1476 1240 1122 153 561 41 1819 794 1752 178 1266 1177 122 1 591 1169 6 2
Below cutoff 838 1244 467 339 712 289 2444 1362 1946 192 112 368 50 611 1579

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001012455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005248950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011514406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011514408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011514410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017010479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047418384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054354667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_007059223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_007059224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_007059225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_007059226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008487281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008487282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008487283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008487284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK092117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK309235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL833347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC101557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC101559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC143560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX283350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KT584331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MG828700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z98745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000289788   ⟹   ENSP00000289788
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl628,432,655 - 28,443,491 (-)Ensembl
RefSeq Acc Id: ENST00000481983   ⟹   ENSP00000435430
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl628,431,930 - 28,443,480 (-)Ensembl
RefSeq Acc Id: ENST00000486481
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl628,434,891 - 28,443,502 (-)Ensembl
RefSeq Acc Id: NM_001012455   ⟹   NP_001012458
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,432,655 - 28,443,491 (-)NCBI
GRCh37628,399,373 - 28,411,279 (-)NCBI
Celera630,006,860 - 30,017,706 (-)RGD
HuRef628,206,244 - 28,217,065 (-)RGD
CHM1_1628,402,835 - 28,413,681 (-)NCBI
T2T-CHM13v2.0628,304,101 - 28,314,932 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047418384   ⟹   XP_047274340
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,427,062 - 28,443,491 (-)NCBI
RefSeq Acc Id: XM_054354667   ⟹   XP_054210642
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0628,298,506 - 28,314,833 (-)NCBI
RefSeq Acc Id: XR_007059223
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,421,400 - 28,443,491 (-)NCBI
RefSeq Acc Id: XR_007059224
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,421,400 - 28,443,491 (-)NCBI
RefSeq Acc Id: XR_007059225
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,421,400 - 28,443,491 (-)NCBI
RefSeq Acc Id: XR_007059226
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,421,400 - 28,443,491 (-)NCBI
RefSeq Acc Id: XR_008487281
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0628,290,130 - 28,314,833 (-)NCBI
RefSeq Acc Id: XR_008487282
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0628,290,130 - 28,314,833 (-)NCBI
RefSeq Acc Id: XR_008487283
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0628,290,130 - 28,314,833 (-)NCBI
RefSeq Acc Id: XR_008487284
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0628,290,130 - 28,314,932 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001012458   ⟸   NM_001012455
- UniProtKB: Q96KV9 (UniProtKB/Swiss-Prot),   Q3MJ62 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSP00000435430   ⟸   ENST00000481983
RefSeq Acc Id: ENSP00000289788   ⟸   ENST00000289788
RefSeq Acc Id: XP_047274340   ⟸   XM_047418384
- Peptide Label: isoform X1
- UniProtKB: Q3MJ62 (UniProtKB/Swiss-Prot),   Q96KV9 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054210642   ⟸   XM_054354667
- Peptide Label: isoform X1
- UniProtKB: Q96KV9 (UniProtKB/Swiss-Prot),   Q3MJ62 (UniProtKB/Swiss-Prot)
Protein Domains
SCAN box

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3MJ62-F1-model_v2 AlphaFold Q3MJ62 1-389 view protein structure

Promoters
RGD ID:6872330
Promoter ID:EPDNEW_H9329
Type:initiation region
Name:ZSCAN23_1
Description:zinc finger and SCAN domain containing 23
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,443,480 - 28,443,540EPDNEW
RGD ID:6805054
Promoter ID:HG_KWN:52690
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_001012455,   OTTHUMT00000043752,   OTTHUMT00000043753,   UC003NLH.2,   UC010JRF.1
Position:
Human AssemblyChrPosition (strand)Source
Build 36628,518,921 - 28,519,421 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
COSMIC ZSCAN23 COSMIC
Ensembl Genes ENSG00000187987 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000289788 ENTREZGENE
  ENST00000289788.5 UniProtKB/Swiss-Prot
  ENST00000481983.5 UniProtKB/TrEMBL
Gene3D-CATH 1.10.4020.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/Swiss-Prot
GTEx ENSG00000187987 GTEx
HGNC ID HGNC:21193 ENTREZGENE
Human Proteome Map ZSCAN23 Human Proteome Map
InterPro SCAN_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SCAN_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/Swiss-Prot
  Znf_C2H2_type UniProtKB/Swiss-Prot
KEGG Report hsa:222696 UniProtKB/Swiss-Prot
NCBI Gene 222696 ENTREZGENE
PANTHER PROTEIN ZBED8-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SCAN DOMAIN-CONTAINING PROTEIN 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam SCAN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/Swiss-Prot
PharmGKB PA162410995 PharmGKB
PROSITE SCAN_BOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot
SMART SCAN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/Swiss-Prot
Superfamily-SCOP Retrovirus capsid dimerization domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF57667 UniProtKB/Swiss-Prot
UniProt G3V1D5_HUMAN UniProtKB/TrEMBL
  Q3MJ62 ENTREZGENE
  Q96KV9 ENTREZGENE
  ZSC23_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary Q96KV9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-04-14 ZSCAN23  zinc finger and SCAN domain containing 23  LOC105374997  uncharacterized LOC105374997  Data merged from RGD:38622787 737654 PROVISIONAL