OR13C9 (olfactory receptor family 13 subfamily C member 9) - Rat Genome Database

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Gene: OR13C9 (olfactory receptor family 13 subfamily C member 9) Homo sapiens
Analyze
Symbol: OR13C9
Name: olfactory receptor family 13 subfamily C member 9
RGD ID: 1353189
HGNC Page HGNC:15104
Description: Predicted to enable olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Located in nucleoplasm and plasma membrane.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: olfactory receptor 13C9; olfactory receptor OR9-13; olfactory receptor, family 13, subfamily C, member 9; OR37L; OR9-13
RGD Orthologs
Mouse
Rat
Pig
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389104,617,248 - 104,618,204 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9104,617,248 - 104,618,204 (-)EnsemblGRCh38hg38GRCh38
GRCh379107,379,529 - 107,380,485 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369106,419,350 - 106,420,306 (-)NCBINCBI36Build 36hg18NCBI36
Build 349104,459,083 - 104,460,040NCBI
Celera977,885,142 - 77,886,098 (-)NCBICelera
Cytogenetic Map9q31.1NCBI
HuRef976,982,330 - 76,983,286 (-)NCBIHuRef
CHM1_19107,526,412 - 107,527,368 (-)NCBICHM1_1
T2T-CHM13v2.09116,792,032 - 116,792,988 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)
nucleoplasm  (IDA)
plasma membrane  (IBA,IDA,IEA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
Schizophrenia  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12906860   PMID:14983052   PMID:21873635  


Genomics

Comparative Map Data
OR13C9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389104,617,248 - 104,618,204 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9104,617,248 - 104,618,204 (-)EnsemblGRCh38hg38GRCh38
GRCh379107,379,529 - 107,380,485 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369106,419,350 - 106,420,306 (-)NCBINCBI36Build 36hg18NCBI36
Build 349104,459,083 - 104,460,040NCBI
Celera977,885,142 - 77,886,098 (-)NCBICelera
Cytogenetic Map9q31.1NCBI
HuRef976,982,330 - 76,983,286 (-)NCBIHuRef
CHM1_19107,526,412 - 107,527,368 (-)NCBICHM1_1
T2T-CHM13v2.09116,792,032 - 116,792,988 (-)NCBIT2T-CHM13v2.0
Or13c9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39452,935,430 - 52,936,381 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl452,935,430 - 52,936,381 (-)EnsemblGRCm39 Ensembl
GRCm38452,935,430 - 52,936,381 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl452,935,430 - 52,936,381 (-)EnsemblGRCm38mm10GRCm38
MGSCv37452,948,302 - 52,949,253 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36452,956,530 - 52,957,481 (-)NCBIMGSCv36mm8
Celera452,910,154 - 52,911,105 (-)NCBICelera
Cytogenetic Map4B2NCBI
cM Map428.57NCBI
Or13c9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8572,351,109 - 72,352,059 (-)NCBIGRCr8
mRatBN7.2567,555,718 - 67,556,668 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl567,552,266 - 67,560,535 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx569,463,773 - 69,464,723 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0571,255,753 - 71,256,703 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0571,252,583 - 71,253,533 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0569,751,364 - 69,752,314 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl569,751,364 - 69,752,314 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0573,915,317 - 73,916,267 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4570,366,726 - 70,367,676 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1570,371,838 - 70,372,789 (-)NCBI
Celera566,463,128 - 66,464,078 (-)NCBICelera
Cytogenetic Map5q23NCBI
LOC100154900
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11245,961,394 - 245,964,479 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21275,289,962 - 275,290,939 (+)NCBISscrofa10.2Sscrofa10.2susScr3

Variants

.
Variants in OR13C9
8 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 9q22.33-33.1(chr9:99138048-115011033)x1 copy number loss See cases [RCV000050315] Chr9:99138048..115011033 [GRCh38]
Chr9:101900330..117773312 [GRCh37]
Chr9:100940151..116813133 [NCBI36]
Chr9:9q22.33-33.1		 pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138179445)x3 copy number gain See cases [RCV000050348] Chr9:193412..138179445 [GRCh38]
Chr9:204193..141073897 [GRCh37]
Chr9:194193..140193718 [NCBI36]
Chr9:9p24.3-q34.3		 pathogenic
GRCh38/hg38 9q22.33-33.1(chr9:99349916-115767475)x1 copy number loss See cases [RCV000052921] Chr9:99349916..115767475 [GRCh38]
Chr9:102112198..118529754 [GRCh37]
Chr9:101152019..117569575 [NCBI36]
Chr9:9q22.33-33.1		 pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138124532)x3 copy number gain See cases [RCV000053745] Chr9:193412..138124532 [GRCh38]
Chr9:204193..141018984 [GRCh37]
Chr9:194193..140138805 [NCBI36]
Chr9:9p24.3-q34.3		 pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138114463)x3 copy number gain See cases [RCV000053746] Chr9:193412..138114463 [GRCh38]
Chr9:214367..141008915 [GRCh37]
Chr9:204367..140128736 [NCBI36]
Chr9:9p24.3-q34.3		 pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138179445)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053748]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053748]|See cases [RCV000053748] Chr9:193412..138179445 [GRCh38]
Chr9:266045..141073897 [GRCh37]
Chr9:256045..140193718 [NCBI36]
Chr9:9p24.3-q34.3		 pathogenic
GRCh38/hg38 9q22.1-32(chr9:88522292-113687796)x3 copy number gain See cases [RCV000053752] Chr9:88522292..113687796 [GRCh38]
Chr9:91137207..116450076 [GRCh37]
Chr9:90327027..115489897 [NCBI36]
Chr9:9q22.1-32		 pathogenic
GRCh38/hg38 9q22.32-31.2(chr9:94184266-106730550)x3 copy number gain See cases [RCV000053774] Chr9:94184266..106730550 [GRCh38]
Chr9:96946548..109492831 [GRCh37]
Chr9:95986369..108532652 [NCBI36]
Chr9:9q22.32-31.2		 pathogenic
NM_001001956.1(OR13C9):c.956G>A (p.Ter319=) single nucleotide variant Malignant melanoma [RCV000068479] Chr9:104617249 [GRCh38]
Chr9:107379530 [GRCh37]
Chr9:106419351 [NCBI36]
Chr9:9q31.1		 not provided
NM_001001956.1(OR13C9):c.192G>A (p.Gly64=) single nucleotide variant Malignant melanoma [RCV000068480] Chr9:104618013 [GRCh38]
Chr9:107380294 [GRCh37]
Chr9:106420115 [NCBI36]
Chr9:9q31.1		 not provided
GRCh38/hg38 9p24.3-q34.3(chr9:204193-138179445) copy number gain See cases [RCV000133791] Chr9:204193..138179445 [GRCh38]
Chr9:204193..141073897 [GRCh37]
Chr9:194193..140193718 [NCBI36]
Chr9:9p24.3-q34.3		 pathogenic
GRCh38/hg38 9q22.32-31.3(chr9:95061030-108695569)x1 copy number loss See cases [RCV000134375] Chr9:95061030..108695569 [GRCh38]
Chr9:97823312..111457849 [GRCh37]
Chr9:96863133..110497670 [NCBI36]
Chr9:9q22.32-31.3		 pathogenic
GRCh38/hg38 9q31.1-32(chr9:103767420-112984794)x1 copy number loss See cases [RCV000134976] Chr9:103767420..112984794 [GRCh38]
Chr9:106529701..115747074 [GRCh37]
Chr9:105569522..114786895 [NCBI36]
Chr9:9q31.1-32		 pathogenic
GRCh38/hg38 9q31.1(chr9:103006145-105161449)x1 copy number loss See cases [RCV000135554] Chr9:103006145..105161449 [GRCh38]
Chr9:105768427..107923730 [GRCh37]
Chr9:104808248..106963551 [NCBI36]
Chr9:9q31.1		 uncertain significance
GRCh38/hg38 9q31.1(chr9:104300531-104730156)x3 copy number gain See cases [RCV000136069] Chr9:104300531..104730156 [GRCh38]
Chr9:107062812..107492437 [GRCh37]
Chr9:106102633..106532258 [NCBI36]
Chr9:9q31.1		 likely benign
GRCh38/hg38 9q21.11-31.2(chr9:68420430-106579493)x3 copy number gain See cases [RCV000136788] Chr9:68420430..106579493 [GRCh38]
Chr9:71130848..109341774 [GRCh37]
Chr9:70225166..108381595 [NCBI36]
Chr9:9q21.11-31.2		 pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138124524)x3 copy number gain See cases [RCV000138783] Chr9:193412..138124524 [GRCh38]
Chr9:204090..141018976 [GRCh37]
Chr9:194090..140138797 [NCBI36]
Chr9:9p24.3-q34.3		 pathogenic
GRCh38/hg38 9q22.33-31.3(chr9:99024205-109947890)x1 copy number loss See cases [RCV000138281] Chr9:99024205..109947890 [GRCh38]
Chr9:101786487..112710170 [GRCh37]
Chr9:100826308..111749991 [NCBI36]
Chr9:9q22.33-31.3		 pathogenic|likely pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138159073)x3 copy number gain See cases [RCV000138962] Chr9:193412..138159073 [GRCh38]
Chr9:204104..141053525 [GRCh37]
Chr9:194104..140173346 [NCBI36]
Chr9:9p24.3-q34.3		 pathogenic|conflicting data from submitters
GRCh38/hg38 9p11.2-q34.3(chr9:193412-138159073)x3 copy number gain See cases [RCV000139207] Chr9:193412..138159073 [GRCh38]
Chr9:68420641..141053525 [GRCh37]
Chr9:67910461..140173346 [NCBI36]
Chr9:9p11.2-q34.3		 pathogenic
GRCh38/hg38 9q21.12-31.3(chr9:69627642-111454304)x3 copy number gain See cases [RCV000139789] Chr9:69627642..111454304 [GRCh38]
Chr9:72242558..114216584 [GRCh37]
Chr9:71432378..113256405 [NCBI36]
Chr9:9q21.12-31.3		 pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:203861-138125937)x3 copy number gain See cases [RCV000141876] Chr9:203861..138125937 [GRCh38]
Chr9:203861..141020389 [GRCh37]
Chr9:193861..140140210 [NCBI36]
Chr9:9p24.3-q34.3		 pathogenic
GRCh38/hg38 9q31.1-31.2(chr9:104036284-105935181)x3 copy number gain See cases [RCV000143264] Chr9:104036284..105935181 [GRCh38]
Chr9:106798565..108697462 [GRCh37]
Chr9:105838386..107737283 [NCBI36]
Chr9:9q31.1-31.2		 uncertain significance
GRCh38/hg38 9p24.3-q34.3(chr9:203862-138125937)x3 copy number gain See cases [RCV000143476] Chr9:203862..138125937 [GRCh38]
Chr9:203862..141020389 [GRCh37]
Chr9:193862..140140210 [NCBI36]
Chr9:9p24.3-q34.3		 pathogenic
GRCh38/hg38 9q22.33-33.1(chr9:99138048-115011033)x1 copy number loss See cases [RCV000148264] Chr9:99138048..115011033 [GRCh38]
Chr9:101900330..117773312 [GRCh37]
Chr9:100940151..116813133 [NCBI36]
Chr9:9q22.33-33.1		 pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138179445)x3 copy number gain See cases [RCV000148113] Chr9:193412..138179445 [GRCh38]
Chr9:204193..141073897 [GRCh37]
Chr9:194193..140193718 [NCBI36]
Chr9:9p24.3-q34.3		 pathogenic
GRCh37/hg19 9p24.3-q34.3(chr9:163131-141122114)x3 copy number gain See cases [RCV000240081] Chr9:163131..141122114 [GRCh37]
Chr9:9p24.3-q34.3		 pathogenic
GRCh37/hg19 9p24.3-q34.3(chr9:62525-141006407) copy number gain See cases [RCV000449375] Chr9:62525..141006407 [GRCh37]
Chr9:9p24.3-q34.3		 pathogenic
GRCh37/hg19 9p24.3-q34.3(chr9:203861-141020389)x3 copy number gain not specified [RCV003986800] Chr9:203861..141020389 [GRCh37]
Chr9:9p24.3-q34.3		 pathogenic
GRCh37/hg19 9q31.1-33.3(chr9:104604851-126253089)x1 copy number loss See cases [RCV000447763] Chr9:104604851..126253089 [GRCh37]
Chr9:9q31.1-33.3		 pathogenic
NC_000009.11:g.(?_102339410)_(109549354_?)del deletion Schizophrenia [RCV000416788] Chr9:102339410..109549354 [GRCh37]
Chr9:101379231..108589175 [NCBI36]
Chr9:9q22.33-31.2		 likely pathogenic
GRCh37/hg19 9q31.1-31.3(chr9:103271401-113948226)x1 copy number loss See cases [RCV000447957] Chr9:103271401..113948226 [GRCh37]
Chr9:9q31.1-31.3		 pathogenic
GRCh37/hg19 9p24.3-q34.3(chr9:203864-141020389)x3 copy number gain See cases [RCV000448978] Chr9:203864..141020389 [GRCh37]
Chr9:9p24.3-q34.3		 pathogenic
NM_001001956.1(OR13C9):c.373G>T (p.Ala125Ser) single nucleotide variant Inborn genetic diseases [RCV003255892] Chr9:104617832 [GRCh38]
Chr9:107380113 [GRCh37]
Chr9:9q31.1		 uncertain significance
GRCh37/hg19 9q21.11-34.3(chr9:71069743-140999928) copy number gain Global developmental delay [RCV000626548] Chr9:71069743..140999928 [GRCh37]
Chr9:9q21.11-34.3		 likely pathogenic
GRCh37/hg19 9p24.3-q34.3(chr9:203862-141020389) copy number gain See cases [RCV000512392] Chr9:203862..141020389 [GRCh37]
Chr9:9p24.3-q34.3		 pathogenic
GRCh37/hg19 9q31.1-31.3(chr9:106487247-114541579)x1 copy number loss not provided [RCV000683163] Chr9:106487247..114541579 [GRCh37]
Chr9:9q31.1-31.3		 pathogenic
GRCh37/hg19 9q31.1(chr9:107370498-107379895)x1 copy number loss not provided [RCV000748578] Chr9:107370498..107379895 [GRCh37]
Chr9:9q31.1		 benign
GRCh37/hg19 9p24.3-q34.3(chr9:10590-141122247)x3 copy number gain not provided [RCV000748055] Chr9:10590..141122247 [GRCh37]
Chr9:9p24.3-q34.3		 pathogenic
GRCh37/hg19 9p24.3-q34.3(chr9:10590-141107672)x3 copy number gain not provided [RCV000748053] Chr9:10590..141107672 [GRCh37]
Chr9:9p24.3-q34.3		 pathogenic
GRCh37/hg19 9p24.3-q34.3(chr9:46587-141066491)x3 copy number gain not provided [RCV000748063] Chr9:46587..141066491 [GRCh37]
Chr9:9p24.3-q34.3		 pathogenic
GRCh37/hg19 9p24.3-q34.3(chr9:10590-141114095)x2 copy number gain not provided [RCV000748054] Chr9:10590..141114095 [GRCh37]
Chr9:9p24.3-q34.3		 pathogenic
GRCh37/hg19 9p24.3-q34.3(chr9:203861-141020388)x3 copy number gain not provided [RCV000845900] Chr9:203861..141020388 [GRCh37]
Chr9:9p24.3-q34.3		 pathogenic
GRCh37/hg19 9q21.11-34.3(chr9:71416475-141020389)x3 copy number gain not provided [RCV000847808] Chr9:71416475..141020389 [GRCh37]
Chr9:9q21.11-34.3		 pathogenic
GRCh37/hg19 9q31.1(chr9:106618735-107897515)x3 copy number gain not provided [RCV000848900] Chr9:106618735..107897515 [GRCh37]
Chr9:9q31.1		 uncertain significance
NM_001001956.1(OR13C9):c.430A>G (p.Met144Val) single nucleotide variant Inborn genetic diseases [RCV003246111] Chr9:104617775 [GRCh38]
Chr9:107380056 [GRCh37]
Chr9:9q31.1		 uncertain significance
GRCh37/hg19 9q22.31-31.2(chr9:96126075-108535272)x1 copy number loss See cases [RCV001194520] Chr9:96126075..108535272 [GRCh37]
Chr9:9q22.31-31.2		 pathogenic
GRCh37/hg19 9q21.11-33.2(chr9:71349994-122603410) copy number gain not specified [RCV002053853] Chr9:71349994..122603410 [GRCh37]
Chr9:9q21.11-33.2		 likely pathogenic
GRCh37/hg19 9q31.1-33.3(chr9:104604851-126253089) copy number loss not specified [RCV002052825] Chr9:104604851..126253089 [GRCh37]
Chr9:9q31.1-33.3		 pathogenic
GRCh37/hg19 9p24.3-q34.3(chr9:353349-141020389) copy number gain not specified [RCV002053823] Chr9:353349..141020389 [GRCh37]
Chr9:9p24.3-q34.3		 pathogenic
GRCh37/hg19 9q31.1-31.2(chr9:102858276-110624997)x3 copy number gain not provided [RCV001834515] Chr9:102858276..110624997 [GRCh37]
Chr9:9q31.1-31.2		 uncertain significance
GRCh37/hg19 9p24.3-q34.11(chr9:203861-131603223)x3 copy number gain See cases [RCV002292402] Chr9:203861..131603223 [GRCh37]
Chr9:9p24.3-q34.11		 pathogenic
GRCh37/hg19 9p22.1-q33.1(chr9:19356861-119513311) copy number loss Distal tetrasomy 15q [RCV002280776] Chr9:19356861..119513311 [GRCh37]
Chr9:9p22.1-q33.1		 uncertain significance
GRCh37/hg19 9q31.1(chr9:106173402-107431515)x1 copy number loss not provided [RCV002472789] Chr9:106173402..107431515 [GRCh37]
Chr9:9q31.1		 uncertain significance
NM_001001956.1(OR13C9):c.499C>T (p.Pro167Ser) single nucleotide variant Inborn genetic diseases [RCV002973293] Chr9:104617706 [GRCh38]
Chr9:107379987 [GRCh37]
Chr9:9q31.1		 uncertain significance
NM_001001956.1(OR13C9):c.664A>G (p.Ile222Val) single nucleotide variant Inborn genetic diseases [RCV002817398] Chr9:104617541 [GRCh38]
Chr9:107379822 [GRCh37]
Chr9:9q31.1		 uncertain significance
NM_001001956.1(OR13C9):c.310G>A (p.Gly104Ser) single nucleotide variant Inborn genetic diseases [RCV002649211] Chr9:104617895 [GRCh38]
Chr9:107380176 [GRCh37]
Chr9:9q31.1		 uncertain significance
GRCh38/hg38 9q31.1-31.3(chr9:102995214-108903040)x1 copy number loss Weiss-kruszka syndrome [RCV003327720] Chr9:102995214..108903040 [GRCh38]
Chr9:9q31.1-31.3		 pathogenic
NM_001001956.1(OR13C9):c.238T>C (p.Ser80Pro) single nucleotide variant Inborn genetic diseases [RCV003366424] Chr9:104617967 [GRCh38]
Chr9:107380248 [GRCh37]
Chr9:9q31.1		 uncertain significance
Single allele deletion not provided [RCV003448676] Chr9:92679543..109378847 [GRCh37]
Chr9:9q22.2-31.2		 pathogenic
GRCh37/hg19 9q31.1-31.2(chr9:102606857-109839724)x1 copy number loss not specified [RCV003986787] Chr9:102606857..109839724 [GRCh37]
Chr9:9q31.1-31.2		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:39
Count of miRNA genes:36
Interacting mature miRNAs:36
Transcripts:ENST00000259362
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
OR13C9__5961  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh379107,379,480 - 107,380,020UniSTSGRCh37
Build 369106,419,301 - 106,419,841RGDNCBI36
Celera977,885,093 - 77,885,633RGD
HuRef976,982,281 - 76,982,821UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 12 1 1 13 1 2 1 1
Below cutoff 99 87 348 35 63 28 114 88 688 14 139 116 7 33 85

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000259362   ⟹   ENSP00000259362
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl9104,617,248 - 104,618,204 (-)Ensembl
RefSeq Acc Id: NM_001001956   ⟹   NP_001001956
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh389104,617,248 - 104,618,204 (-)NCBI
GRCh379107,379,529 - 107,380,485 (-)RGD
Build 369106,419,350 - 106,420,306 (-)NCBI Archive
Celera977,885,142 - 77,886,098 (-)RGD
HuRef976,982,330 - 76,983,286 (-)ENTREZGENE
CHM1_19107,526,412 - 107,527,368 (-)NCBI
T2T-CHM13v2.09116,792,032 - 116,792,988 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001001956   ⟸   NM_001001956
- UniProtKB: Q6IFL2 (UniProtKB/Swiss-Prot),   Q8NGT0 (UniProtKB/Swiss-Prot),   A0A126GVC2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000259362   ⟸   ENST00000259362
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8NGT0-F1-model_v2 AlphaFold Q8NGT0 1-318 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:15104 AgrOrtholog
COSMIC OR13C9 COSMIC
Ensembl Genes ENSG00000136839 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000259362 ENTREZGENE
  ENST00000259362.1 UniProtKB/Swiss-Prot
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000136839 GTEx
HGNC ID HGNC:15104 ENTREZGENE
Human Proteome Map OR13C9 Human Proteome Map
InterPro GPCR_Rhodpsn UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:286362 UniProtKB/Swiss-Prot
NCBI Gene 286362 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OLFACTORY RECEPTOR 13C9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA32039 PharmGKB
PRINTS GPCRRHODOPSN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A126GVC2 ENTREZGENE, UniProtKB/TrEMBL
  O13C9_HUMAN UniProtKB/Swiss-Prot
  Q6IFL2 ENTREZGENE
  Q8NGT0 ENTREZGENE
UniProt Secondary Q6IFL2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-15 OR13C9  olfactory receptor family 13 subfamily C member 9  OR13C9  olfactory receptor, family 13, subfamily C, member 9  Symbol and/or name change 5135510 APPROVED