PPP1R8P1 (protein phosphatase 1 regulatory subunit 8 pseudogene 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: PPP1R8P1 (protein phosphatase 1 regulatory subunit 8 pseudogene 1) Homo sapiens
Analyze
Symbol: PPP1R8P1
Name: protein phosphatase 1 regulatory subunit 8 pseudogene 1
RGD ID: 1352990
HGNC Page HGNC:9297
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: PPP1R8P
Related Functional Gene: PPP1R8  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38148,324,976 - 48,326,158 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl148,325,080 - 48,326,123 (-)EnsemblGRCh38hg38GRCh38
GRCh37148,790,648 - 48,791,830 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36148,563,233 - 48,564,405 (-)NCBINCBI36Build 36hg18NCBI36
Celera147,077,356 - 47,078,528 (-)NCBICelera
Cytogenetic Map1p33NCBI
HuRef146,907,592 - 46,908,764 (-)NCBIHuRef
CHM1_1148,907,819 - 48,908,991 (-)NCBICHM1_1
T2T-CHM13v2.0148,203,743 - 48,204,925 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:10103062  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:114
Count of miRNA genes:100
Interacting mature miRNAs:100
Transcripts:ENST00000452549
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 145 121 485 5 51 5 764 104 1933 20 671 366 102 613
Below cutoff 1657 1923 878 300 888 173 2612 1251 1679 265 628 978 128 947 1462

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000452549
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl148,325,080 - 48,326,123 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC PPP1R8P1 COSMIC
Ensembl Genes ENSG00000224986 Ensembl, ENTREZGENE
GTEx ENSG00000224986 GTEx
HGNC ID HGNC:9297 ENTREZGENE
Human Proteome Map PPP1R8P1 Human Proteome Map
NCBI Gene 5512 ENTREZGENE
PharmGKB PA33660 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-24 PPP1R8P1  protein phosphatase 1 regulatory subunit 8 pseudogene 1    protein phosphatase 1, regulatory subunit 8 pseudogene 1  Symbol and/or name change 5135510 APPROVED
2011-10-11 PPP1R8P1  protein phosphatase 1, regulatory subunit 8 pseudogene 1  PPP1R8P1  protein phosphatase 1, regulatory (inhibitor) subunit 8 pseudogene 1  Symbol and/or name change 5135510 APPROVED
2011-09-01 PPP1R8P1  protein phosphatase 1, regulatory (inhibitor) subunit 8 pseudogene 1  PPP1R8P  protein phosphatase 1, regulatory (inhibitor) subunit 8 pseudogene  Symbol and/or name change 5135510 APPROVED