CKS1BP3 (CDC28 protein kinase regulatory subunit 1B pseudogene 3) - Rat Genome Database

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Gene: CKS1BP3 (CDC28 protein kinase regulatory subunit 1B pseudogene 3) Homo sapiens
Analyze
Symbol: CKS1BP3
Name: CDC28 protein kinase regulatory subunit 1B pseudogene 3
RGD ID: 1352719
HGNC Page HGNC:24233
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: CKS1B  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38562,511,771 - 62,512,482 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl562,512,246 - 62,512,482 (-)EnsemblGRCh38hg38GRCh38
GRCh37561,807,598 - 61,808,309 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36561,843,258 - 61,844,166 (-)NCBINCBI36Build 36hg18NCBI36
Celera1029,751,853 - 29,752,577 (+)NCBICelera
Cytogenetic Map5q12.1NCBI
HuRef558,763,836 - 58,764,460 (-)NCBIHuRef
CHM1_1561,807,283 - 61,808,004 (-)NCBICHM1_1
T2T-CHM13v2.0563,331,402 - 63,332,113 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:28986522  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:92
Count of miRNA genes:92
Interacting mature miRNAs:92
Transcripts:ENST00000600888
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2 1 5
Low 29 72 81 32 148 30 157 13 59 47 182 116 4 43 81
Below cutoff 440 572 373 117 247 90 1087 274 567 56 359 361 30 381 627 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000600888
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl562,512,246 - 62,512,482 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC CKS1BP3 COSMIC
Ensembl Genes ENSG00000268942 Ensembl
GTEx ENSG00000268942 GTEx
HGNC ID HGNC:24233 ENTREZGENE
Human Proteome Map CKS1BP3 Human Proteome Map
NCBI Gene 246715 ENTREZGENE
PharmGKB PA134986863 PharmGKB