GAL3ST4 (galactose-3-O-sulfotransferase 4) - Rat Genome Database

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Gene: GAL3ST4 (galactose-3-O-sulfotransferase 4) Homo sapiens
Analyze
Symbol: GAL3ST4
Name: galactose-3-O-sulfotransferase 4
RGD ID: 1351990
HGNC Page HGNC:24145
Description: Enables galactose 3-O-sulfotransferase activity. Acts upstream of or within glycoprotein biosynthetic process. Located in membrane.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: beta-galactose-3-O-sulfotransferase 4; beta-galactose-3-O-sulfotransferase, 4; FLJ12116; gal-beta-1,3-GalNAc 3'-sulfotransferase; GAL3ST-4; galbeta1-3GalNAc 3'-sulfotransferase
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387100,159,244 - 100,168,617 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7100,159,244 - 100,168,617 (-)EnsemblGRCh38hg38GRCh38
GRCh37799,756,867 - 99,766,240 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36799,594,801 - 99,604,309 (-)NCBINCBI36Build 36hg18NCBI36
Build 34799,401,518 - 99,410,867NCBI
Celera794,492,209 - 94,501,719 (-)NCBICelera
Cytogenetic Map7q22.1NCBI
HuRef794,391,755 - 94,401,167 (-)NCBIHuRef
CHM1_1799,686,992 - 99,696,447 (-)NCBICHM1_1
T2T-CHM13v2.07101,399,037 - 101,408,410 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2799,116,951 - 99,126,460 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:8125298   PMID:11333265   PMID:12690205   PMID:14701868   PMID:14702039   PMID:15489334   PMID:15498874   PMID:16169070   PMID:19199708   PMID:21873635   PMID:23147795   PMID:25954032  
PMID:29180661   PMID:30639242   PMID:31586073  


Genomics

Comparative Map Data
GAL3ST4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387100,159,244 - 100,168,617 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7100,159,244 - 100,168,617 (-)EnsemblGRCh38hg38GRCh38
GRCh37799,756,867 - 99,766,240 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36799,594,801 - 99,604,309 (-)NCBINCBI36Build 36hg18NCBI36
Build 34799,401,518 - 99,410,867NCBI
Celera794,492,209 - 94,501,719 (-)NCBICelera
Cytogenetic Map7q22.1NCBI
HuRef794,391,755 - 94,401,167 (-)NCBIHuRef
CHM1_1799,686,992 - 99,696,447 (-)NCBICHM1_1
T2T-CHM13v2.07101,399,037 - 101,408,410 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2799,116,951 - 99,126,460 (-)NCBI
Gal3st4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395138,263,180 - 138,271,261 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5138,263,183 - 138,271,102 (-)EnsemblGRCm39 Ensembl
GRCm385138,264,918 - 138,273,057 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5138,264,921 - 138,272,840 (-)EnsemblGRCm38mm10GRCm38
MGSCv375138,706,153 - 138,713,982 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365138,494,713 - 138,502,542 (-)NCBIMGSCv36mm8
Celera5135,247,777 - 135,255,605 (-)NCBICelera
Cytogenetic Map5G2NCBI
cM Map577.0NCBI
Gal3st4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81222,381,576 - 22,390,566 (-)NCBIGRCr8
mRatBN7.21217,267,963 - 17,276,951 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1217,267,963 - 17,276,833 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1218,235,492 - 18,244,000 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01218,859,215 - 18,867,722 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01217,912,627 - 17,921,139 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01219,583,110 - 19,592,444 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1219,583,110 - 19,592,000 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01221,639,959 - 21,648,725 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41217,848,556 - 17,857,313 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1219,192,623 - 19,201,295 (-)NCBICelera
Cytogenetic Map12q11NCBI
Gal3st4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955573637,805 - 645,072 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955573637,921 - 644,723 (+)NCBIChiLan1.0ChiLan1.0
GAL3ST4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26118,078,178 - 118,088,383 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17166,342,810 - 166,353,015 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0792,194,003 - 92,203,853 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17105,626,713 - 105,636,202 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7105,626,713 - 105,636,202 (-)Ensemblpanpan1.1panPan2
GAL3ST4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.169,361,856 - 9,367,781 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl69,361,940 - 9,367,795 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha611,065,846 - 11,071,767 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.069,295,534 - 9,301,455 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl69,295,244 - 9,301,451 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.169,147,990 - 9,153,939 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.069,127,052 - 9,133,001 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.069,308,137 - 9,314,064 (+)NCBIUU_Cfam_GSD_1.0
Gal3st4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344133,613,465 - 133,619,503 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936543417,034 - 423,037 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936543417,034 - 423,017 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GAL3ST4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl38,162,912 - 8,168,637 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.138,162,909 - 8,168,810 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.237,353,390 - 7,359,172 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GAL3ST4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12812,901,665 - 12,909,916 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2812,901,585 - 12,909,645 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660703,370,517 - 3,380,668 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gal3st4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474016,741,482 - 16,748,050 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in GAL3ST4
44 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 7p22.3-q36.3(chr7:53985-159282531)x1 copy number loss See cases [RCV000052250] Chr7:53985..159282531 [GRCh38]
Chr7:53985..159075220 [GRCh37]
Chr7:149068..158767981 [NCBI36]
Chr7:7p22.3-q36.3		 pathogenic
GRCh38/hg38 7q21.3-22.1(chr7:98288474-101259804)x3 copy number gain See cases [RCV000053573] Chr7:98288474..101259804 [GRCh38]
Chr7:97917786..100903085 [GRCh37]
Chr7:97755722..100689805 [NCBI36]
Chr7:7q21.3-22.1		 pathogenic
GRCh38/hg38 7q22.1(chr7:99219420-100902269)x1 copy number loss See cases [RCV000054154] Chr7:99219420..100902269 [GRCh38]
Chr7:98817043..100499889 [GRCh37]
Chr7:98654979..100337825 [NCBI36]
Chr7:7q22.1		 pathogenic
NM_024637.4(GAL3ST4):c.1212G>A (p.Ala404=) single nucleotide variant Malignant melanoma [RCV000068041] Chr7:100160177 [GRCh38]
Chr7:99757800 [GRCh37]
Chr7:99595736 [NCBI36]
Chr7:7q22.1		 not provided
NM_018275.4(C7orf43):c.1225G>A (p.Glu409Lys) single nucleotide variant Malignant melanoma [RCV000068040] Chr7:100156401 [GRCh38]
Chr7:99754024 [GRCh37]
Chr7:99591960 [NCBI36]
Chr7:7q22.1		 not provided
NM_024637.5(GAL3ST4):c.538C>T (p.Arg180Cys) single nucleotide variant not provided [RCV001812274]|not specified [RCV004035524] Chr7:100160851 [GRCh38]
Chr7:99758474 [GRCh37]
Chr7:7q22.1		 uncertain significance
GRCh38/hg38 7p22.3-q36.3(chr7:54185-159282390)x1 copy number loss See cases [RCV000135401] Chr7:54185..159282390 [GRCh38]
Chr7:54185..159075079 [GRCh37]
Chr7:149268..158767840 [NCBI36]
Chr7:7p22.3-q36.3		 pathogenic
GRCh38/hg38 7q22.1(chr7:99195836-102258175)x1 copy number loss See cases [RCV000135782] Chr7:99195836..102258175 [GRCh38]
Chr7:98793459..101718950 [GRCh37]
Chr7:98631395..101688175 [NCBI36]
Chr7:7q22.1		 pathogenic|uncertain significance
GRCh38/hg38 7q22.1(chr7:99195836-100348063)x3 copy number gain See cases [RCV000135630] Chr7:99195836..100348063 [GRCh38]
Chr7:98793459..99945686 [GRCh37]
Chr7:98631395..99783622 [NCBI36]
Chr7:7q22.1		 likely benign
GRCh38/hg38 7q21.3-36.3(chr7:97419852-158923762)x3 copy number gain See cases [RCV000136717] Chr7:97419852..158923762 [GRCh38]
Chr7:97049164..158716453 [GRCh37]
Chr7:96887100..158409214 [NCBI36]
Chr7:7q21.3-36.3		 pathogenic
GRCh38/hg38 7q22.1(chr7:99932610-102473188)x3 copy number gain See cases [RCV000138109] Chr7:99932610..102473188 [GRCh38]
Chr7:99530233..102113635 [GRCh37]
Chr7:99368169..101900640 [NCBI36]
Chr7:7q22.1		 uncertain significance
GRCh37/hg19 7q22.1(chr7:99724620-99972850)x3 copy number gain See cases [RCV000240398] Chr7:99724620..99972850 [GRCh37]
Chr7:7q22.1		 uncertain significance
GRCh37/hg19 7q22.1-36.3(chr7:98969247-159119707)x3 copy number gain See cases [RCV000447709] Chr7:98969247..159119707 [GRCh37]
Chr7:7q22.1-36.3		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:43361-159119707) copy number gain See cases [RCV000510686] Chr7:43361..159119707 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:43361-159119707)x3 copy number gain See cases [RCV000511549] Chr7:43361..159119707 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
NM_024637.5(GAL3ST4):c.1231G>A (p.Gly411Ser) single nucleotide variant not specified [RCV004318462] Chr7:100160158 [GRCh38]
Chr7:99757781 [GRCh37]
Chr7:7q22.1		 uncertain significance
GRCh38/hg38 7q22.1(chr7:99880388-100288453)x3 copy number gain See cases [RCV000142715] Chr7:99880388..100288453 [GRCh38]
Chr7:99478011..99886076 [GRCh37]
Chr7:99315947..99724012 [NCBI36]
Chr7:7q22.1		 likely benign|uncertain significance
TMEM106B-BRAF fusion deletion Pleomorphic xanthoastrocytoma [RCV000454357] Chr7:12258147..140494267 [GRCh37]
Chr7:7p21.3-q34		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:43360-159119707)x1 copy number loss See cases [RCV000446044] Chr7:43360..159119707 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
NM_024637.5(GAL3ST4):c.689A>T (p.His230Leu) single nucleotide variant not specified [RCV004284575] Chr7:100160700 [GRCh38]
Chr7:99758323 [GRCh37]
Chr7:7q22.1		 uncertain significance
GRCh37/hg19 7q22.1-36.3(chr7:98693388-159119707)x3 copy number gain not provided [RCV000682911] Chr7:98693388..159119707 [GRCh37]
Chr7:7q22.1-36.3		 pathogenic
GRCh37/hg19 7q22.1(chr7:98847725-102472176)x1 copy number loss not provided [RCV000682904] Chr7:98847725..102472176 [GRCh37]
Chr7:7q22.1		 pathogenic
NC_000007.13:g.(20954043_21001537)_(114528369_114556605)inv inversion Childhood apraxia of speech [RCV000234948] Chr7:21001537..114528369 [GRCh37]
Chr7:7p15.3-q31.1		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:44935-159126310)x3 copy number gain not provided [RCV000746280] Chr7:44935..159126310 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:10704-159122532)x3 copy number gain not provided [RCV000746278] Chr7:10704..159122532 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:10365-159119707)x3 copy number gain not provided [RCV000848126] Chr7:10365..159119707 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
NM_024637.5(GAL3ST4):c.713C>G (p.Pro238Arg) single nucleotide variant not provided [RCV000886649] Chr7:100160676 [GRCh38]
Chr7:99758299 [GRCh37]
Chr7:7q22.1		 likely benign
NM_024637.5(GAL3ST4):c.1057C>T (p.Arg353Trp) single nucleotide variant not provided [RCV000958950] Chr7:100160332 [GRCh38]
Chr7:99757955 [GRCh37]
Chr7:7q22.1		 benign
NM_024637.5(GAL3ST4):c.1058G>A (p.Arg353Gln) single nucleotide variant not provided [RCV000953559] Chr7:100160331 [GRCh38]
Chr7:99757954 [GRCh37]
Chr7:7q22.1		 benign
NM_024637.5(GAL3ST4):c.429+9T>A single nucleotide variant not provided [RCV000972591] Chr7:100166493 [GRCh38]
Chr7:99764116 [GRCh37]
Chr7:7q22.1		 benign
NM_024637.5(GAL3ST4):c.972C>T (p.Asp324=) single nucleotide variant not provided [RCV000954681] Chr7:100160417 [GRCh38]
Chr7:99758040 [GRCh37]
Chr7:7q22.1		 benign
NM_024637.5(GAL3ST4):c.280G>A (p.Gly94Arg) single nucleotide variant not provided [RCV000962219] Chr7:100166651 [GRCh38]
Chr7:99764274 [GRCh37]
Chr7:7q22.1		 benign
NM_024637.5(GAL3ST4):c.867G>A (p.Trp289Ter) single nucleotide variant not provided [RCV000912911] Chr7:100160522 [GRCh38]
Chr7:99758145 [GRCh37]
Chr7:7q22.1		 likely benign
GRCh37/hg19 7q22.1(chr7:99593346-102470275)x1 copy number loss See cases [RCV001195072] Chr7:99593346..102470275 [GRCh37]
Chr7:7q22.1		 likely pathogenic
Single allele complex Ring chromosome 7 [RCV002280646] Chr7:43360..159119707 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
NM_024637.5(GAL3ST4):c.97C>T (p.Gln33Ter) single nucleotide variant not specified [RCV001264585] Chr7:100166999 [GRCh38]
Chr7:99764622 [GRCh37]
Chr7:7q22.1		 uncertain significance
GRCh37/hg19 7q21.12-22.1(chr7:87477185-100333327) copy number gain Isolated Pierre-Robin syndrome [RCV001352649] Chr7:87477185..100333327 [GRCh37]
Chr7:7q21.12-22.1		 pathogenic
GRCh37/hg19 7q22.1-31.1(chr7:99417471-111586308) copy number loss not specified [RCV002053711] Chr7:99417471..111586308 [GRCh37]
Chr7:7q22.1-31.1		 pathogenic
GRCh37/hg19 7q22.1(chr7:98755291-99886571)x3 copy number gain not provided [RCV001836489] Chr7:98755291..99886571 [GRCh37]
Chr7:7q22.1		 uncertain significance
NC_000007.13:g.(?_98983338)_(100860555_?)del deletion not provided [RCV001877526] Chr7:98983338..100860555 [GRCh37]
Chr7:7q22.1		 pathogenic|uncertain significance
NC_000007.13:g.(?_98507659)_(100860555_?)dup duplication not provided [RCV003113282] Chr7:98507659..100860555 [GRCh37]
Chr7:7q22.1		 uncertain significance
GRCh37/hg19 7p22.3-q36.3(chr7:56604613-96692931)x1 copy number loss See cases [RCV002287832] Chr7:56604613..96692931 [GRCh37]
Chr7:7p22.3-q36.3		 uncertain significance
NM_024637.5(GAL3ST4):c.317G>A (p.Gly106Asp) single nucleotide variant not specified [RCV004165412] Chr7:100166614 [GRCh38]
Chr7:99764237 [GRCh37]
Chr7:7q22.1		 uncertain significance
NM_024637.5(GAL3ST4):c.612C>G (p.His204Gln) single nucleotide variant not specified [RCV004090248] Chr7:100160777 [GRCh38]
Chr7:99758400 [GRCh37]
Chr7:7q22.1		 uncertain significance
NM_024637.5(GAL3ST4):c.443T>C (p.Met148Thr) single nucleotide variant not specified [RCV004127088] Chr7:100160946 [GRCh38]
Chr7:99758569 [GRCh37]
Chr7:7q22.1		 uncertain significance
NM_024637.5(GAL3ST4):c.616G>A (p.Ala206Thr) single nucleotide variant not specified [RCV004218893] Chr7:100160773 [GRCh38]
Chr7:99758396 [GRCh37]
Chr7:7q22.1		 uncertain significance
NM_024637.5(GAL3ST4):c.578G>A (p.Arg193Gln) single nucleotide variant not specified [RCV004204427] Chr7:100160811 [GRCh38]
Chr7:99758434 [GRCh37]
Chr7:7q22.1		 uncertain significance
NM_024637.5(GAL3ST4):c.1414C>G (p.Pro472Ala) single nucleotide variant not specified [RCV004082996] Chr7:100159975 [GRCh38]
Chr7:99757598 [GRCh37]
Chr7:7q22.1		 uncertain significance
NM_024637.5(GAL3ST4):c.883G>C (p.Asp295His) single nucleotide variant not specified [RCV004123893] Chr7:100160506 [GRCh38]
Chr7:99758129 [GRCh37]
Chr7:7q22.1		 uncertain significance
NM_024637.5(GAL3ST4):c.359G>A (p.Arg120His) single nucleotide variant not specified [RCV004190988] Chr7:100166572 [GRCh38]
Chr7:99764195 [GRCh37]
Chr7:7q22.1		 likely benign
NM_024637.5(GAL3ST4):c.1358G>A (p.Arg453His) single nucleotide variant not specified [RCV004205200] Chr7:100160031 [GRCh38]
Chr7:99757654 [GRCh37]
Chr7:7q22.1		 uncertain significance
NM_024637.5(GAL3ST4):c.170G>A (p.Arg57Gln) single nucleotide variant not specified [RCV004243970] Chr7:100166761 [GRCh38]
Chr7:99764384 [GRCh37]
Chr7:7q22.1		 uncertain significance
NM_024637.5(GAL3ST4):c.838G>A (p.Asp280Asn) single nucleotide variant not specified [RCV004201524] Chr7:100160551 [GRCh38]
Chr7:99758174 [GRCh37]
Chr7:7q22.1		 uncertain significance
NM_024637.5(GAL3ST4):c.1073G>A (p.Arg358Gln) single nucleotide variant not specified [RCV004140726] Chr7:100160316 [GRCh38]
Chr7:99757939 [GRCh37]
Chr7:7q22.1		 uncertain significance
NM_024637.5(GAL3ST4):c.1183G>A (p.Glu395Lys) single nucleotide variant not specified [RCV004145255] Chr7:100160206 [GRCh38]
Chr7:99757829 [GRCh37]
Chr7:7q22.1		 uncertain significance
NM_024637.5(GAL3ST4):c.881T>C (p.Leu294Pro) single nucleotide variant not specified [RCV004102075] Chr7:100160508 [GRCh38]
Chr7:99758131 [GRCh37]
Chr7:7q22.1		 uncertain significance
NM_024637.5(GAL3ST4):c.905T>C (p.Met302Thr) single nucleotide variant not specified [RCV004154700] Chr7:100160484 [GRCh38]
Chr7:99758107 [GRCh37]
Chr7:7q22.1		 uncertain significance
NM_024637.5(GAL3ST4):c.224A>C (p.His75Pro) single nucleotide variant not specified [RCV004094785] Chr7:100166707 [GRCh38]
Chr7:99764330 [GRCh37]
Chr7:7q22.1		 uncertain significance
NM_024637.5(GAL3ST4):c.1082C>G (p.Ala361Gly) single nucleotide variant not specified [RCV004140375] Chr7:100160307 [GRCh38]
Chr7:99757930 [GRCh37]
Chr7:7q22.1		 uncertain significance
NM_024637.5(GAL3ST4):c.262C>T (p.Arg88Cys) single nucleotide variant not specified [RCV004218035] Chr7:100166669 [GRCh38]
Chr7:99764292 [GRCh37]
Chr7:7q22.1		 uncertain significance
NM_024637.5(GAL3ST4):c.797T>C (p.Val266Ala) single nucleotide variant not specified [RCV004269387] Chr7:100160592 [GRCh38]
Chr7:99758215 [GRCh37]
Chr7:7q22.1		 uncertain significance
NM_024637.5(GAL3ST4):c.251G>A (p.Ser84Asn) single nucleotide variant not specified [RCV004284790] Chr7:100166680 [GRCh38]
Chr7:99764303 [GRCh37]
Chr7:7q22.1		 likely benign
NM_024637.5(GAL3ST4):c.1172C>T (p.Thr391Ile) single nucleotide variant not specified [RCV004268202] Chr7:100160217 [GRCh38]
Chr7:99757840 [GRCh37]
Chr7:7q22.1		 uncertain significance
NM_024637.5(GAL3ST4):c.607G>A (p.Asp203Asn) single nucleotide variant not specified [RCV004302149] Chr7:100160782 [GRCh38]
Chr7:99758405 [GRCh37]
Chr7:7q22.1		 uncertain significance
GRCh38/hg38 7q22.1(chr7:98454022-100723798)x1 copy number loss Multiple congenital anomalies/dysmorphic syndrome [RCV003327701] Chr7:98454022..100723798 [GRCh38]
Chr7:7q22.1		 pathogenic
NM_024637.5(GAL3ST4):c.305G>A (p.Arg102His) single nucleotide variant not specified [RCV004334772] Chr7:100166626 [GRCh38]
Chr7:99764249 [GRCh37]
Chr7:7q22.1		 uncertain significance
NM_024637.5(GAL3ST4):c.182C>A (p.Pro61Gln) single nucleotide variant not specified [RCV004340686] Chr7:100166749 [GRCh38]
Chr7:99764372 [GRCh37]
Chr7:7q22.1		 uncertain significance
GRCh37/hg19 7q22.1(chr7:99263437-100105272)x1 copy number loss not provided [RCV003482973] Chr7:99263437..100105272 [GRCh37]
Chr7:7q22.1		 uncertain significance
GRCh37/hg19 7q22.1(chr7:99114000-101878272)x1 copy number loss not provided [RCV003482971] Chr7:99114000..101878272 [GRCh37]
Chr7:7q22.1		 pathogenic
GRCh37/hg19 7q22.1(chr7:98396469-102108193)x1 copy number loss not specified [RCV003986701] Chr7:98396469..102108193 [GRCh37]
Chr7:7q22.1		 likely pathogenic
NM_024637.5(GAL3ST4):c.1132T>C (p.Trp378Arg) single nucleotide variant not specified [RCV004390325] Chr7:100160257 [GRCh38]
Chr7:99757880 [GRCh37]
Chr7:7q22.1		 uncertain significance
NM_024637.5(GAL3ST4):c.1153G>A (p.Gly385Ser) single nucleotide variant not specified [RCV004390326] Chr7:100160236 [GRCh38]
Chr7:99757859 [GRCh37]
Chr7:7q22.1		 uncertain significance
NM_024637.5(GAL3ST4):c.362C>T (p.Pro121Leu) single nucleotide variant not specified [RCV004390333] Chr7:100166569 [GRCh38]
Chr7:99764192 [GRCh37]
Chr7:7q22.1		 uncertain significance
NM_024637.5(GAL3ST4):c.1273C>T (p.Arg425Cys) single nucleotide variant not specified [RCV004390328] Chr7:100160116 [GRCh38]
Chr7:99757739 [GRCh37]
Chr7:7q22.1		 uncertain significance
NM_024637.5(GAL3ST4):c.155C>T (p.Ser52Leu) single nucleotide variant not specified [RCV004390329] Chr7:100166776 [GRCh38]
Chr7:99764399 [GRCh37]
Chr7:7q22.1		 likely benign
NM_024637.5(GAL3ST4):c.273C>A (p.Asp91Glu) single nucleotide variant not specified [RCV004390331] Chr7:100166658 [GRCh38]
Chr7:99764281 [GRCh37]
Chr7:7q22.1		 uncertain significance
NM_024637.5(GAL3ST4):c.421C>A (p.Leu141Met) single nucleotide variant not specified [RCV004392406] Chr7:100166510 [GRCh38]
Chr7:99764133 [GRCh37]
Chr7:7q22.1		 uncertain significance
NM_024637.5(GAL3ST4):c.485C>T (p.Ala162Val) single nucleotide variant not specified [RCV004392407] Chr7:100160904 [GRCh38]
Chr7:99758527 [GRCh37]
Chr7:7q22.1		 uncertain significance
NM_024637.5(GAL3ST4):c.314T>C (p.Phe105Ser) single nucleotide variant not provided [RCV000888340] Chr7:100166617 [GRCh38]
Chr7:99764240 [GRCh37]
Chr7:7q22.1		 likely benign
NM_024637.5(GAL3ST4):c.854C>A (p.Ser285Tyr) single nucleotide variant not specified [RCV004185490] Chr7:100160535 [GRCh38]
Chr7:99758158 [GRCh37]
Chr7:7q22.1		 uncertain significance
NM_024637.5(GAL3ST4):c.1404G>T (p.Lys468Asn) single nucleotide variant not specified [RCV004171432] Chr7:100159985 [GRCh38]
Chr7:99757608 [GRCh37]
Chr7:7q22.1		 uncertain significance
NM_024637.5(GAL3ST4):c.32G>A (p.Arg11Gln) single nucleotide variant not specified [RCV004081808] Chr7:100167064 [GRCh38]
Chr7:99764687 [GRCh37]
Chr7:7q22.1		 uncertain significance
NM_024637.5(GAL3ST4):c.1163G>A (p.Arg388Gln) single nucleotide variant not specified [RCV004263703] Chr7:100160226 [GRCh38]
Chr7:99757849 [GRCh37]
Chr7:7q22.1		 uncertain significance
NM_024637.5(GAL3ST4):c.736G>C (p.Gly246Arg) single nucleotide variant not specified [RCV004339604] Chr7:100160653 [GRCh38]
Chr7:99758276 [GRCh37]
Chr7:7q22.1		 uncertain significance
NM_024637.5(GAL3ST4):c.1273C>A (p.Arg425Ser) single nucleotide variant not specified [RCV004390327] Chr7:100160116 [GRCh38]
Chr7:99757739 [GRCh37]
Chr7:7q22.1		 uncertain significance
NM_024637.5(GAL3ST4):c.708C>A (p.Asn236Lys) single nucleotide variant not specified [RCV004392408] Chr7:100160681 [GRCh38]
Chr7:99758304 [GRCh37]
Chr7:7q22.1		 uncertain significance
NM_024637.5(GAL3ST4):c.979G>A (p.Gly327Ser) single nucleotide variant not specified [RCV004392409] Chr7:100160410 [GRCh38]
Chr7:99758033 [GRCh37]
Chr7:7q22.1		 uncertain significance
NM_024637.5(GAL3ST4):c.263G>A (p.Arg88His) single nucleotide variant not specified [RCV004390330] Chr7:100166668 [GRCh38]
Chr7:99764291 [GRCh37]
Chr7:7q22.1		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3060
Count of miRNA genes:902
Interacting mature miRNAs:1080
Transcripts:ENST00000360039, ENST00000411994, ENST00000413800, ENST00000423751, ENST00000426974, ENST00000460995, ENST00000482469, ENST00000495882, ENST00000498000
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
D1S1425  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map1p33UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map1p31.3UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map6q25.3UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map4q21.23UniSTS
Cytogenetic Map22q12.1UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map1q23.1UniSTS
Cytogenetic Map10q22UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map10p14UniSTS
Cytogenetic Map6p21.33UniSTS
Cytogenetic Map10q26.3UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map7p22.2UniSTS
Cytogenetic Map12q13.12UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic Map14q32.12UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map18p11.31UniSTS
Cytogenetic Map13q34UniSTS
Cytogenetic Map4p14UniSTS
Cytogenetic Map8p23.1UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map3q21.3UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map8q12.1UniSTS
Cytogenetic Map11q12.3UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map10p12UniSTS
Cytogenetic Map12q13UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map8q24UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map5q32UniSTS
Cytogenetic Map1q21.2UniSTS
Cytogenetic Map3q26.2UniSTS
Cytogenetic Map6q25.2-q25.3UniSTS
Cytogenetic Map20q11.2-q13.2UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map1q21-q23UniSTS
Cytogenetic Map17q21.32UniSTS
Cytogenetic Map1p35.3UniSTS
Cytogenetic Map1p12UniSTS
Cytogenetic Map2p23-p22UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map16q12.1UniSTS
Cytogenetic Map17q22-q23UniSTS
Cytogenetic Map2p11.1UniSTS
Cytogenetic Map16q12.2UniSTS
Cytogenetic Map2p12-p11.2UniSTS
Cytogenetic Map3q11.1UniSTS
Cytogenetic Map2p21UniSTS
Cytogenetic Map17q11.2-q12UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map1p32-p31UniSTS
Cytogenetic Map1p21.3UniSTS
Cytogenetic Map1q32.2UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map7q21-q22UniSTS
Cytogenetic Map1q25.3UniSTS
Cytogenetic Map18p11.3-p11.2UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map21p11.1UniSTS
Cytogenetic Map12q24.31-q24.32UniSTS
Cytogenetic Map9q33.2UniSTS
Cytogenetic Map11q13.5UniSTS
Cytogenetic Map12p12.2-p11.2UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic Map19p13.3-p13.2UniSTS
Cytogenetic Map7q32.1UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map17q22-q23.2UniSTS
Cytogenetic Map3q27.1UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map4q21.21UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map14q24.2UniSTS
Cytogenetic Map20q13.33UniSTS
Cytogenetic Map3p21UniSTS
Cytogenetic Map10p11.23UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map1q25.2UniSTS
Cytogenetic Map18q12.1UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map15q23UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map13q12.11UniSTS
Cytogenetic Map1p36.31UniSTS
Cytogenetic Map3q21.1UniSTS
Cytogenetic Map12p12UniSTS
Cytogenetic Map21q22.11UniSTS
Cytogenetic Map15q15.3UniSTS
Cytogenetic MapXq12-q13UniSTS
Cytogenetic Map22q11.2UniSTS
Cytogenetic Map7q31.1-q31.3UniSTS
Cytogenetic MapXp22.11UniSTS
Cytogenetic Map3p21.1-p14.2UniSTS
Cytogenetic Map2p24UniSTS
Cytogenetic Map20p12.1UniSTS
Cytogenetic Map3q26.33UniSTS
Cytogenetic Map12q13.11-q14.3UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map9q21.33UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic MapXq13-q21UniSTS
Cytogenetic Map8q24.22UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map6q25.2-q27UniSTS
Cytogenetic Map12q24.32UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic MapXq13.1UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map14q12UniSTS
Cytogenetic Map12q23-q24.1UniSTS
Cytogenetic Map4q35.1UniSTS
Cytogenetic Map17q24.1UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map14q21UniSTS
Cytogenetic Map9p24.3UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map2p14UniSTS
Cytogenetic Map21q22.2UniSTS
Cytogenetic Map2q12.3UniSTS
Cytogenetic Map8p21.1UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map3q25.33UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map1p34UniSTS
Cytogenetic Map19p13.1UniSTS
Cytogenetic Map5q14.1UniSTS
Cytogenetic MapXq22.3UniSTS
Cytogenetic Map7p21.1UniSTS
Cytogenetic Map6p25.2UniSTS
Cytogenetic Map10q23.33UniSTS
Cytogenetic Map15q11-q12UniSTS
Cytogenetic Map3p22.2UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map15q21.1-q21.2UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map4q13.3UniSTS
Cytogenetic Map19p13.13UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map17q24.3UniSTS
Cytogenetic Map12p13.33UniSTS
Cytogenetic Map11q14.1UniSTS
Cytogenetic Map3p22-p21.3UniSTS
Cytogenetic Map16q22.3UniSTS
Cytogenetic Map1p22.1UniSTS
Cytogenetic Map6p12.1UniSTS
Cytogenetic Map19q13.33-q13.41UniSTS
Cytogenetic Map2p25.3UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map5p12UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map7q35UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map7q11.1UniSTS
Cytogenetic Map2p25.1-p24.1UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map4q31.21UniSTS
Cytogenetic Map5p13.1UniSTS
Cytogenetic MapXq22.1UniSTS
Cytogenetic Map9q21.11UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map1p22.2UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map12q24UniSTS
Cytogenetic MapXq24UniSTS
Cytogenetic Map1q24.2UniSTS
Cytogenetic Map22q13.31UniSTS
Cytogenetic Map8p11.23UniSTS
Cytogenetic Map1q23.3UniSTS
Cytogenetic Map16p12UniSTS
Cytogenetic Map10p15-p14UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map1q22-q23UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map7q31UniSTS
Cytogenetic Map10q26UniSTS
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map6p22.3UniSTS
Cytogenetic Map6p21.2UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map11q24.2UniSTS
Cytogenetic MapXq28UniSTS
Cytogenetic Map1p33-p32UniSTS
Cytogenetic Map5q35.2UniSTS
Cytogenetic Map3p14.3UniSTS
Cytogenetic Map12q24.33UniSTS
Cytogenetic Map3q26.1-q26.2UniSTS
Cytogenetic Map12p13UniSTS
Cytogenetic Map7q36.1UniSTS
Cytogenetic Map8p11.21UniSTS
Cytogenetic Map12q13.1-q13.2UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map19q13.33UniSTS
Cytogenetic Map16p12.3UniSTS
Cytogenetic Map13q14.11UniSTS
Cytogenetic Map9p13.2UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map3q13.2UniSTS
Cytogenetic Map8p22UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map1q42.3UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map5q12.3UniSTS
Cytogenetic Map20q11.21UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map12q14.3UniSTS
Cytogenetic Map6q15UniSTS
Cytogenetic Map6q22.32UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map16p13.11UniSTS
Cytogenetic Map10q24.32UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map18q11.1UniSTS
Cytogenetic Map16q23.2UniSTS
Cytogenetic Map3q12.1UniSTS
Cytogenetic Map15q24-q25UniSTS
Cytogenetic Map7q31.1UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map8q13.1UniSTS
Cytogenetic Map6pter-p12.1UniSTS
Cytogenetic Map6q16UniSTS
Cytogenetic Map12q14.1UniSTS
Cytogenetic Map17q21.2UniSTS
Cytogenetic Map9q22.2UniSTS
Cytogenetic Map17q23.2UniSTS
Cytogenetic Map11q23.1-q23.2UniSTS
Cytogenetic Map13q14UniSTS
Cytogenetic Map4q23UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map11q24.3UniSTS
Cytogenetic Map7p14UniSTS
Cytogenetic Map15q24.1UniSTS
Cytogenetic Map16q24.2UniSTS
Cytogenetic Map12q13.11UniSTS
Cytogenetic Map9p13.3UniSTS
Cytogenetic Map8q22.1UniSTS
Cytogenetic Map6q16.2UniSTS
Cytogenetic Map5p15.2UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic Map14q22.3UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map12q13.2UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map3q29UniSTS
Cytogenetic Map5q23.3-q31.1UniSTS
Cytogenetic Map1p36UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map12p13.31UniSTS
Cytogenetic Map3q12.3UniSTS
Cytogenetic Map11q23UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map20q11UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map5q23.3UniSTS
Cytogenetic Map15q15.1UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map1q42UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map12q24.13UniSTS
Cytogenetic Map3q27.3UniSTS
Cytogenetic Map14q21.3UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map20q13.32UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic MapXq21.1UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 581 762 112 102 81 9 2170 273 704 73 843 316 93 260 1325
Low 1820 2090 1409 332 1708 266 1969 1663 3020 299 578 1242 78 944 1249 4 1
Below cutoff 34 133 202 186 157 186 216 258 9 46 34 53 214 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000360039   ⟹   ENSP00000353142
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7100,159,244 - 100,168,617 (-)Ensembl
RefSeq Acc Id: ENST00000411994   ⟹   ENSP00000414733
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7100,159,816 - 100,167,230 (-)Ensembl
RefSeq Acc Id: ENST00000413800   ⟹   ENSP00000400451
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7100,159,244 - 100,167,284 (-)Ensembl
RefSeq Acc Id: ENST00000423751   ⟹   ENSP00000399066
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7100,159,646 - 100,168,613 (-)Ensembl
RefSeq Acc Id: ENST00000460995   ⟹   ENSP00000488800
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7100,166,599 - 100,168,135 (-)Ensembl
RefSeq Acc Id: ENST00000482469   ⟹   ENSP00000487594
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7100,166,533 - 100,168,069 (-)Ensembl
RefSeq Acc Id: ENST00000495882
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7100,159,244 - 100,168,112 (-)Ensembl
RefSeq Acc Id: ENST00000498000   ⟹   ENSP00000488586
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7100,160,729 - 100,168,142 (-)Ensembl
RefSeq Acc Id: NM_024637   ⟹   NP_078913
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387100,159,244 - 100,168,617 (-)NCBI
GRCh37799,756,865 - 99,766,373 (-)RGD
Build 36799,594,801 - 99,604,309 (-)NCBI Archive
Celera794,492,209 - 94,501,719 (-)RGD
HuRef794,391,755 - 94,401,167 (-)ENTREZGENE
CHM1_1799,686,992 - 99,696,447 (-)NCBI
T2T-CHM13v2.07101,399,037 - 101,408,410 (-)NCBI
CRA_TCAGchr7v2799,116,951 - 99,126,460 (-)RGD
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_078913   ⟸   NM_024637
- UniProtKB: Q96E33 (UniProtKB/Swiss-Prot),   Q8WZ17 (UniProtKB/Swiss-Prot),   Q8N3P7 (UniProtKB/Swiss-Prot),   D6W5U5 (UniProtKB/Swiss-Prot),   B4DWL8 (UniProtKB/Swiss-Prot),   A4D2A8 (UniProtKB/Swiss-Prot),   Q9HA78 (UniProtKB/Swiss-Prot),   Q96RP7 (UniProtKB/Swiss-Prot),   B3KRX9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000399066   ⟸   ENST00000423751
RefSeq Acc Id: ENSP00000414733   ⟸   ENST00000411994
RefSeq Acc Id: ENSP00000353142   ⟸   ENST00000360039
RefSeq Acc Id: ENSP00000400451   ⟸   ENST00000413800
RefSeq Acc Id: ENSP00000487594   ⟸   ENST00000482469
RefSeq Acc Id: ENSP00000488586   ⟸   ENST00000498000
RefSeq Acc Id: ENSP00000488800   ⟸   ENST00000460995

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q96RP7-F1-model_v2 AlphaFold Q96RP7 1-486 view protein structure

Promoters
RGD ID:6805699
Promoter ID:HG_KWN:58892
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Jurkat,   K562,   Lymphoblastoid
Transcripts:NM_024637,   OTTHUMT00000337547,   OTTHUMT00000337549,   OTTHUMT00000337550,   OTTHUMT00000337551,   UC003UTT.1,   UC010LGQ.1
Position:
Human AssemblyChrPosition (strand)Source
Build 36799,602,891 - 99,605,267 (-)MPROMDB
RGD ID:7211321
Promoter ID:EPDNEW_H11405
Type:initiation region
Name:GAL3ST4_1
Description:galactose-3-O-sulfotransferase 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H11406  EPDNEW_H11407  EPDNEW_H11408  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh387100,167,192 - 100,167,252EPDNEW
RGD ID:7211319
Promoter ID:EPDNEW_H11406
Type:initiation region
Name:GAL3ST4_4
Description:galactose-3-O-sulfotransferase 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H11405  EPDNEW_H11407  EPDNEW_H11408  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh387100,168,071 - 100,168,131EPDNEW
RGD ID:7211323
Promoter ID:EPDNEW_H11407
Type:initiation region
Name:GAL3ST4_2
Description:galactose-3-O-sulfotransferase 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H11406  EPDNEW_H11405  EPDNEW_H11408  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh387100,168,617 - 100,168,677EPDNEW
RGD ID:7211325
Promoter ID:EPDNEW_H11408
Type:initiation region
Name:GAL3ST4_3
Description:galactose-3-O-sulfotransferase 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H11406  EPDNEW_H11405  EPDNEW_H11407  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh387100,171,483 - 100,171,543EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:24145 AgrOrtholog
COSMIC GAL3ST4 COSMIC
Ensembl Genes ENSG00000197093 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000360039 ENTREZGENE
  ENST00000360039.9 UniProtKB/Swiss-Prot
  ENST00000411994.1 UniProtKB/TrEMBL
  ENST00000413800.5 UniProtKB/Swiss-Prot
  ENST00000423751.2 UniProtKB/TrEMBL
  ENST00000460995.2 UniProtKB/TrEMBL
  ENST00000482469.5 UniProtKB/TrEMBL
  ENST00000498000.5 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000197093 GTEx
HGNC ID HGNC:24145 ENTREZGENE
Human Proteome Map GAL3ST4 Human Proteome Map
InterPro Gal-3-0_sulfotransfrase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:79690 UniProtKB/Swiss-Prot
NCBI Gene 79690 ENTREZGENE
OMIM 608235 OMIM
PANTHER GALACTOSE-3-O-SULFOTRANSFERASE 4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR14647 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Gal-3-0_sulfotr UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA134921067 PharmGKB
Superfamily-SCOP P-loop containing nucleoside triphosphate hydrolases UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
UniProt A0A0J9YVN4_HUMAN UniProtKB/TrEMBL
  A0A0J9YXX0_HUMAN UniProtKB/TrEMBL
  A0A0J9YYD8_HUMAN UniProtKB/TrEMBL
  A4D2A8 ENTREZGENE
  B3KRX9 ENTREZGENE, UniProtKB/TrEMBL
  B4DWL8 ENTREZGENE
  C9IZ77_HUMAN UniProtKB/TrEMBL
  D6W5U5 ENTREZGENE
  G3ST4_HUMAN UniProtKB/Swiss-Prot
  Q8N3P7 ENTREZGENE
  Q8WZ17 ENTREZGENE
  Q96E33 ENTREZGENE
  Q96RP7 ENTREZGENE
  Q9HA78 ENTREZGENE
UniProt Secondary A4D2A8 UniProtKB/Swiss-Prot
  B4DWL8 UniProtKB/Swiss-Prot
  D6W5U5 UniProtKB/Swiss-Prot
  Q8N3P7 UniProtKB/Swiss-Prot
  Q8WZ17 UniProtKB/Swiss-Prot
  Q96E33 UniProtKB/Swiss-Prot
  Q9HA78 UniProtKB/Swiss-Prot