IGKV1D-35 (immunoglobulin kappa variable 1D-35 (pseudogene)) - Rat Genome Database

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Gene: IGKV1D-35 (immunoglobulin kappa variable 1D-35 (pseudogene)) Homo sapiens
Analyze
Symbol: IGKV1D-35
Name: immunoglobulin kappa variable 1D-35 (pseudogene)
RGD ID: 1351934
HGNC Page HGNC:5754
Description:
Type: pseudo (Ensembl: IG_V_pseudogene)
RefSeq Status: VALIDATED
Previously known as: IGKV1D35; O6
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38289,895,314 - 89,895,788 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl289,895,502 - 89,895,772 (+)EnsemblGRCh38hg38GRCh38
GRCh37289,934,124 - 89,934,598 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36289,571,166 - 89,571,640 (+)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map2p11.2NCBI
HuRef288,304,724 - 88,305,198 (-)NCBIHuRef
CHM1_1289,863,481 - 89,863,955 (+)NCBICHM1_1
T2T-CHM13v2.0290,450,578 - 90,451,052 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:11298326  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:218
Count of miRNA genes:211
Interacting mature miRNAs:217
Transcripts:ENST00000442736
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 1 1
Low 215 21 38 92 197 10 4 5 12 92 92 14 6
Below cutoff 337 223 85 59 315 16 77 19 30 10 65 210 43 56 36

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000442736
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl289,895,502 - 89,895,772 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC IGKV1D-35 COSMIC
Ensembl Genes ENSG00000232747 Ensembl
GTEx ENSG00000232747 GTEx
HGNC ID HGNC:5754 ENTREZGENE
Human Proteome Map IGKV1D-35 Human Proteome Map
NCBI Gene 28895 ENTREZGENE
PharmGKB PA35336 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 IGKV1D-35  immunoglobulin kappa variable 1D-35 (pseudogene)  IGKV1D-35  immunoglobulin kappa variable 1D-35 pseudogene  Symbol and/or name change 5135510 APPROVED