HBG2 (hemoglobin subunit gamma 2) - Rat Genome Database

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Gene: HBG2 (hemoglobin subunit gamma 2) Homo sapiens
Analyze
Symbol: HBG2
Name: hemoglobin subunit gamma 2
RGD ID: 1351638
HGNC Page HGNC:4832
Description: Enables oxygen carrier activity. Involved in oxygen transport. Located in hemoglobin complex. Implicated in delta beta-thalassemia and sickle cell anemia.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: abnormal hemoglobin; fetal hemoglobin F subunit gamma 2; FLJ76540; G-gamma globin Paulinia; gamma globin; gamma-2-globin; gamma-globin chain; hb F Ggamma; HBG-T1; hemoglobin gamma-2 chain; hemoglobin gamma-G chain; hemoglobin subunit gamma-2; hemoglobin, gamma G; methemoglobin; TNCY
RGD Orthologs
Bonobo
Dog
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38115,253,188 - 5,254,781 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl115,253,188 - 5,505,605 (-)EnsemblGRCh38hg38GRCh38
GRCh37115,274,418 - 5,276,011 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36115,230,997 - 5,232,587 (-)NCBINCBI36Build 36hg18NCBI36
Build 34115,230,996 - 5,232,587NCBI
Celera115,393,093 - 5,394,640 (-)NCBICelera
Cytogenetic Map11p15.4NCBI
HuRef114,933,591 - 4,935,181 (-)NCBIHuRef
CHM1_1115,273,343 - 5,274,934 (-)NCBICHM1_1
T2T-CHM13v2.0115,312,544 - 5,314,138 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Hemoglobin F-Cincinnati, alpha 2G gamma 2 41(C7) Phe-->Ser in a newborn with cyanosis. Kohli-Kumar M, etal., Am J Hematol. 1995 May;49(1):43-7.
2. Molecular analysis of the high-hemoglobin-F phenotype in Saudi Arabian sickle cell anemia. Miller BA, etal., N Engl J Med. 1987 Jan 29;316(5):244-50.
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. RGD HPO Phenotype Annotation Pipeline RGD automated import pipeline for human HPO-to-gene-to-disease annotations
Additional References at PubMed
PMID:88735   PMID:822353   PMID:836882   PMID:873928   PMID:881729   PMID:1127124   PMID:1698280   PMID:1703138   PMID:1703139   PMID:1706691   PMID:1714434   PMID:1726095  
PMID:2413469   PMID:2416635   PMID:2420748   PMID:2435680   PMID:2441598   PMID:2442122   PMID:2442123   PMID:2459082   PMID:2459083   PMID:2470017   PMID:2483933   PMID:2578619  
PMID:2578620   PMID:2579547   PMID:2581851   PMID:2581919   PMID:2649166   PMID:2933810   PMID:3120456   PMID:3267215   PMID:3382401   PMID:3455755   PMID:3857622   PMID:3879973  
PMID:3879975   PMID:4403130   PMID:4429671   PMID:4837284   PMID:4846278   PMID:5554303   PMID:5792729   PMID:6086605   PMID:6091051   PMID:6095301   PMID:6155216   PMID:6158500  
PMID:6165992   PMID:6172403   PMID:6184621   PMID:6186522   PMID:6186635   PMID:6186636   PMID:6192110   PMID:6194893   PMID:6194897   PMID:6206897   PMID:6208955   PMID:6210198  
PMID:6264391   PMID:6270663   PMID:6272205   PMID:6280057   PMID:6292831   PMID:6292840   PMID:6297279   PMID:6303333   PMID:6324786   PMID:6327288   PMID:6330670   PMID:6457059  
PMID:6652684   PMID:6683087   PMID:6701091   PMID:6714226   PMID:6814491   PMID:6895866   PMID:6985475   PMID:6985477   PMID:6985481   PMID:7151176   PMID:7162987   PMID:7250702  
PMID:7332928   PMID:7438203   PMID:7543751   PMID:7558873   PMID:7687241   PMID:7687855   PMID:7713741   PMID:8144355   PMID:8566966   PMID:8718700   PMID:8718701   PMID:8911578  
PMID:10335983   PMID:10722114   PMID:10722115   PMID:10722116   PMID:11132233   PMID:11172039   PMID:11514664   PMID:11791877   PMID:11827978   PMID:12477932   PMID:12488461   PMID:12543931  
PMID:14087393   PMID:14649320   PMID:15108284   PMID:15231748   PMID:15476181   PMID:15489334   PMID:15645283   PMID:15798211   PMID:16370494   PMID:16956833   PMID:17365007   PMID:17916326  
PMID:18096417   PMID:18266208   PMID:18443038   PMID:18467329   PMID:18667698   PMID:18932071   PMID:18951049   PMID:19050890   PMID:19065339   PMID:19738201   PMID:19740759   PMID:19861239  
PMID:19892574   PMID:19958193   PMID:20113294   PMID:20183929   PMID:20439494   PMID:20472475   PMID:20602015   PMID:20688955   PMID:21123872   PMID:21561349   PMID:21609963   PMID:21755589  
PMID:21832049   PMID:21873635   PMID:21988832   PMID:22516433   PMID:22623428   PMID:22825848   PMID:22871617   PMID:23284307   PMID:23713742   PMID:23777413   PMID:24189400   PMID:24474642  
PMID:24502349   PMID:25084696   PMID:25123009   PMID:25842369   PMID:25963833   PMID:26849705   PMID:27185208   PMID:29412791   PMID:29610478   PMID:29932071   PMID:30844732   PMID:32296183  
PMID:32319326   PMID:32508152   PMID:32577047   PMID:32772141   PMID:33961781   PMID:34341563   PMID:34535703   PMID:34569056   PMID:36949045   PMID:37318102   PMID:38332023  


Genomics

Comparative Map Data
HBG2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38115,253,188 - 5,254,781 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl115,253,188 - 5,505,605 (-)EnsemblGRCh38hg38GRCh38
GRCh37115,274,418 - 5,276,011 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36115,230,997 - 5,232,587 (-)NCBINCBI36Build 36hg18NCBI36
Build 34115,230,996 - 5,232,587NCBI
Celera115,393,093 - 5,394,640 (-)NCBICelera
Cytogenetic Map11p15.4NCBI
HuRef114,933,591 - 4,935,181 (-)NCBIHuRef
CHM1_1115,273,343 - 5,274,934 (-)NCBICHM1_1
T2T-CHM13v2.0115,312,544 - 5,314,138 (-)NCBIT2T-CHM13v2.0
LOC100979149
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v297,689,537 - 7,694,782 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1117,647,020 - 7,652,265 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0115,402,198 - 5,407,442 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1115,070,689 - 5,072,003 (-)NCBIpanpan1.1PanPan1.1panPan2
LOC485255
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12128,193,163 - 28,194,746 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2127,910,103 - 27,911,501 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02128,910,537 - 28,911,935 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2128,910,440 - 28,911,943 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12128,254,123 - 28,255,521 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02128,481,233 - 28,482,631 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02128,617,627 - 28,619,025 (-)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in HBG2
53 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
NM_000184.3(HBG2):c.191A>T (p.His64Leu) single nucleotide variant Cyanosis, transient neonatal [RCV000022614] Chr11:5254416 [GRCh38]
Chr11:5275646 [GRCh37]
Chr11:11p15.4
pathogenic
NM_000184.3(HBG2):c.202G>A (p.Val68Met) single nucleotide variant Cyanosis, transient neonatal [RCV000022615] Chr11:5254405 [GRCh38]
Chr11:5275635 [GRCh37]
Chr11:11p15.4
pathogenic
NC_000011.10:g.5255348A>C single nucleotide variant Hereditary persistence of fetal hemoglobin [RCV001814972] Chr11:5255348 [GRCh38]
Chr11:5276578 [GRCh37]
Chr11:11p15.4
pathogenic
NM_000184.3(HBG2):c.25A>C (p.Lys9Gln) single nucleotide variant HEMOGLOBIN F (ALBAICIN) [RCV000016097] Chr11:5254704 [GRCh38]
Chr11:5275934 [GRCh37]
Chr11:11p15.4
other
NM_000184.2(HBG2):c.22G>A (p.Asp8Asn) single nucleotide variant HEMOGLOBIN F (AUCKLAND) [RCV000016098] Chr11:5254707 [GRCh38]
Chr11:5275937 [GRCh37]
Chr11:11p15.4
other
NM_000184.2(HBG2):c.361A>C (p.Lys121Gln) single nucleotide variant HEMOGLOBIN F (CALTECH) [RCV000016099] Chr11:5253360 [GRCh38]
Chr11:5274590 [GRCh37]
Chr11:11p15.4
other
NM_000184.2(HBG2):c.364G>A (p.Glu122Lys) single nucleotide variant HEMOGLOBIN F (CARLTON) [RCV000016100] Chr11:5253357 [GRCh38]
Chr11:5274587 [GRCh37]
Chr11:11p15.4
other
NM_000184.3(HBG2):c.198G>C (p.Lys66Asn) single nucleotide variant HEMOGLOBIN F (CLARKE) [RCV000016101] Chr11:5254409 [GRCh38]
Chr11:5275639 [GRCh37]
Chr11:11p15.4
other
NM_000184.2(HBG2):c.283G>A (p.Asp95Asn) single nucleotide variant HEMOGLOBIN F (COLUMBUS-GA) [RCV000016102] Chr11:5254324 [GRCh38]
Chr11:5275554 [GRCh37]
Chr11:11p15.4
other
NM_000184.3(HBG2):c.64G>C (p.Glu22Gln) single nucleotide variant HEMOGLOBIN F (FUCHU) [RCV000016103] Chr11:5254665 [GRCh38]
Chr11:5275895 [GRCh37]
Chr11:11p15.4
other
NM_000184.2(HBG2):c.38C>G (p.Thr13Arg) single nucleotide variant HEMOGLOBIN F (HEATHER) [RCV000016104] Chr11:5254691 [GRCh38]
Chr11:5275921 [GRCh37]
Chr11:11p15.4
other
NM_000184.2(HBG2):c.233A>G (p.His78Arg) single nucleotide variant HEMOGLOBIN F (KENNESTONE) [RCV000016105] Chr11:5254374 [GRCh38]
Chr11:5275604 [GRCh37]
Chr11:11p15.4
other
NM_000184.2(HBG2):c.167T>G (p.Met56Arg) single nucleotide variant HEMOGLOBIN F (KINGSTON) [RCV000016106] Chr11:5254440 [GRCh38]
Chr11:5275670 [GRCh37]
Chr11:11p15.4
other
NM_000184.2(HBG2):c.304G>A (p.Glu102Lys) single nucleotide variant HEMOGLOBIN F (LA GRANGE) [RCV000016107] Chr11:5254303 [GRCh38]
Chr11:5275533 [GRCh37]
Chr11:11p15.4
other
NM_000184.3(HBG2):c.133A>C (p.Ser45Arg) single nucleotide variant HEMOGLOBIN F (LODZ) [RCV000016108] Chr11:5254474 [GRCh38]
Chr11:5275704 [GRCh37]
Chr11:11p15.4
other
NM_000184.2(HBG2):c.4G>T (p.Gly2Cys) single nucleotide variant HEMOGLOBIN F (MALAYSIA) [RCV000016109] Chr11:5254725 [GRCh38]
Chr11:5275955 [GRCh37]
Chr11:11p15.4
other
NM_000184.2(HBG2):c.353A>G (p.His118Arg) single nucleotide variant HEMOGLOBIN F (MALTA) [RCV000016110] Chr11:5253368 [GRCh38]
Chr11:5274598 [GRCh37]
Chr11:11p15.4
other
NM_000184.2(HBG2):c.241G>A (p.Asp81Asn) single nucleotide variant HEMOGLOBIN F (MARIETTA) [RCV000016111] Chr11:5254366 [GRCh38]
Chr11:5275596 [GRCh37]
Chr11:11p15.4
other
NM_000184.2(HBG2):c.17A>G (p.Glu6Gly) single nucleotide variant HEMOGLOBIN F (MEINOHAMA) [RCV000016112] Chr11:5254712 [GRCh38]
Chr11:5275942 [GRCh37]
Chr11:11p15.4
other
NM_000184.2(HBG2):c.49G>C (p.Gly17Arg) single nucleotide variant HEMOGLOBIN F (MELBOURNE) [RCV000016113]|not provided [RCV002227036] Chr11:5254680 [GRCh38]
Chr11:5275910 [GRCh37]
Chr11:11p15.4
likely benign|other
NM_000184.3(HBG2):c.217G>C (p.Gly73Arg) single nucleotide variant HEMOGLOBIN F (MINOO) [RCV000016114] Chr11:5254390 [GRCh38]
Chr11:5275620 [GRCh37]
Chr11:11p15.4
other
NM_000184.2(HBG2):c.79G>A (p.Glu27Lys) single nucleotide variant HEMOGLOBIN F (OAKLAND) [RCV000016115] Chr11:5254650 [GRCh38]
Chr11:5275880 [GRCh37]
Chr11:11p15.4
other
NM_000184.2(HBG2):c.391T>G (p.Trp131Gly) single nucleotide variant HEMOGLOBIN F (POOLE) [RCV000016116] Chr11:5253330 [GRCh38]
Chr11:5274560 [GRCh37]
Chr11:11p15.4
other
NM_000184.2(HBG2):c.377A>C (p.Glu126Ala) single nucleotide variant HEMOGLOBIN F (PORT ROYAL) [RCV000016117] Chr11:5253344 [GRCh38]
Chr11:5274574 [GRCh37]
Chr11:11p15.4
other
NM_000184.2(HBG2):c.200A>G (p.Lys67Arg) single nucleotide variant HEMOGLOBIN F (SHANGHAI) [RCV000016118] Chr11:5254407 [GRCh38]
Chr11:5275637 [GRCh37]
Chr11:11p15.4
other
NM_000184.2(HBG2):c.103G>A (p.Val35Ile) single nucleotide variant HEMOGLOBIN F (TOKYO) [RCV000016119] Chr11:5254504 [GRCh38]
Chr11:5275734 [GRCh37]
Chr11:11p15.4
other
NM_000184.2(HBG2):c.68A>G (p.Asp23Gly) single nucleotide variant HEMOGLOBIN F (URUMQI) [RCV000016120] Chr11:5254661 [GRCh38]
Chr11:5275891 [GRCh37]
Chr11:11p15.4
other
NM_000184.3(HBG2):c.190C>T (p.His64Tyr) single nucleotide variant Cyanosis, transient neonatal [RCV000016121] Chr11:5254417 [GRCh38]
Chr11:5275647 [GRCh37]
Chr11:11p15.4
pathogenic
NM_000184.2(HBG2):c.-255C>G single nucleotide variant Hereditary persistence of fetal hemoglobin [RCV001814960] Chr11:5254983 [GRCh38]
Chr11:5276213 [GRCh37]
Chr11:11p15.4
pathogenic
NM_000184.2(HBG2):c.-228T>C single nucleotide variant Hereditary persistence of fetal hemoglobin [RCV001814961] Chr11:5254956 [GRCh38]
Chr11:5276186 [GRCh37]
Chr11:11p15.4
pathogenic
NG_000007.3(HBG2):g.42677C>T single nucleotide variant Hereditary persistence of fetal hemoglobin [RCV001814962]|not provided [RCV001811143] Chr11:5254939 [GRCh38]
Chr11:5276169 [GRCh37]
Chr11:11p15.4
benign|uncertain significance
NM_000184.2(HBG2):c.68A>T (p.Asp23Val) single nucleotide variant HEMOGLOBIN F (GRANADA) [RCV000016125] Chr11:5254661 [GRCh38]
Chr11:5275891 [GRCh37]
Chr11:11p15.4
other
NM_000184.2(HBG2):c.122G>A (p.Arg41Lys) single nucleotide variant HEMOGLOBIN F (AUSTELL) [RCV000016126]|not provided [RCV003114193] Chr11:5254485 [GRCh38]
Chr11:5275715 [GRCh37]
Chr11:11p15.4
likely benign|other
NM_000184.2(HBG2):c.199A>C (p.Lys67Gln) single nucleotide variant HEMOGLOBIN F (BROOKLYN) [RCV000016127]|not provided [RCV001811144] Chr11:5254408 [GRCh38]
Chr11:5275638 [GRCh37]
Chr11:11p15.4
likely benign|other
NM_000184.2(HBG2):c.439C>T (p.His147Tyr) single nucleotide variant HEMOGLOBIN F (ONODA) [RCV000016128] Chr11:5253282 [GRCh38]
Chr11:5274512 [GRCh37]
Chr11:11p15.4
other
NM_000184.2(HBG2):c.277C>T (p.His93Tyr) single nucleotide variant Cyanosis, transient neonatal [RCV000016129]|not provided [RCV001811145] Chr11:5254330 [GRCh38]
Chr11:5275560 [GRCh37]
Chr11:11p15.4
pathogenic
NM_000184.2(HBG2):c.-167C>T single nucleotide variant Hereditary persistence of fetal hemoglobin [RCV001814963] Chr11:5254895 [GRCh38]
Chr11:5276125 [GRCh37]
Chr11:11p15.4
pathogenic
NM_000184.3(HBG2):c.46T>C (p.Trp16Arg) single nucleotide variant HEMOGLOBIN F (CATALONIA) [RCV000016131] Chr11:5254683 [GRCh38]
Chr11:5275913 [GRCh37]
Chr11:11p15.4
other
NM_000184.3(HBG2):c.77G>A (p.Gly26Glu) single nucleotide variant HEMOGLOBIN F (COSENZA) [RCV000016132] Chr11:5254652 [GRCh38]
Chr11:5275882 [GRCh37]
Chr11:11p15.4
other
NM_000184.3(HBG2):c.178A>C (p.Lys60Gln) single nucleotide variant HEMOGLOBIN F (SACROMONTE) [RCV000016133] Chr11:5254429 [GRCh38]
Chr11:5275659 [GRCh37]
Chr11:11p15.4
other
NM_000184.3(HBG2):c.227T>C (p.Ile76Thr) single nucleotide variant HEMOGLOBIN F (LESVOS) [RCV000030902]|HEMOGLOBIN F (WAYNESBORO) [RCV000016134] Chr11:5254380 [GRCh38]
Chr11:5275610 [GRCh37]
Chr11:11p15.4
other
NM_000184.3(HBG2):c.315G>C (p.Lys105Asn) single nucleotide variant HEMOGLOBIN F (MACEDONIA II) [RCV000016135] Chr11:5254292 [GRCh38]
Chr11:5275522 [GRCh37]
Chr11:11p15.4
other
NM_000184.3(HBG2):c.125T>C (p.Phe42Ser) single nucleotide variant Cyanosis, transient neonatal [RCV000016136] Chr11:5254482 [GRCh38]
Chr11:5275712 [GRCh37]
Chr11:11p15.4
pathogenic
NM_000184.2(HBG2):c.178A>G (p.Lys60Glu) single nucleotide variant HEMOGLOBIN F (EMIRATES) [RCV000016137] Chr11:5254429 [GRCh38]
Chr11:5275659 [GRCh37]
Chr11:11p15.4
other
NM_000184.2(HBG2):c.121A>G (p.Arg41Gly) single nucleotide variant HEMOGLOBIN F (VELETA) [RCV000016139] Chr11:5254486 [GRCh38]
Chr11:5275716 [GRCh37]
Chr11:11p15.4
other
NM_000184.2(HBG2):c.-167C>A single nucleotide variant Hereditary persistence of fetal hemoglobin [RCV001814964] Chr11:5254895 [GRCh38]
Chr11:5276125 [GRCh37]
Chr11:11p15.4
pathogenic
NM_000184.2(HBG2):c.355T>C (p.Phe119Leu) single nucleotide variant HEMOGLOBIN F (CALABRIA) [RCV000016142] Chr11:5253366 [GRCh38]
Chr11:5274596 [GRCh37]
Chr11:11p15.4
other
NM_000184.3(HBG2):c.54G>C (p.Lys18Asn) single nucleotide variant HEMOGLOBIN F (CLAMART) [RCV000016143] Chr11:5254675 [GRCh38]
Chr11:5275905 [GRCh37]
Chr11:11p15.4
other
NM_000184.3(HBG2):c.60T>A (p.Asn20Lys) single nucleotide variant HEMOGLOBIN F (OULED RABAH) [RCV000016144] Chr11:5254669 [GRCh38]
Chr11:5275899 [GRCh37]
Chr11:11p15.4
other
GRCh38/hg38 11p15.4(chr11:3745061-7846057)x3 copy number gain See cases [RCV000053616] Chr11:3745061..7846057 [GRCh38]
Chr11:3766291..7867604 [GRCh37]
Chr11:3722867..7824180 [NCBI36]
Chr11:11p15.4
pathogenic
GRCh38/hg38 11p15.5-13(chr11:202758-31726224)x3 copy number gain See cases [RCV000053613] Chr11:202758..31726224 [GRCh38]
Chr11:202758..31747772 [GRCh37]
Chr11:192758..31704348 [NCBI36]
Chr11:11p15.5-13
pathogenic
NM_000184.2(HBG2):c.212C>T (p.Ser71Phe) single nucleotide variant Malignant melanoma [RCV000062252] Chr11:5254395 [GRCh38]
Chr11:5275625 [GRCh37]
Chr11:5232201 [NCBI36]
Chr11:11p15.4
not provided
GRCh38/hg38 11p15.5-15.1(chr11:446754-18904742)x3 copy number gain See cases [RCV000133997] Chr11:446754..18904742 [GRCh38]
Chr11:446754..18926289 [GRCh37]
Chr11:436754..18882865 [NCBI36]
Chr11:11p15.5-15.1
pathogenic
GRCh38/hg38 11p15.5-15.4(chr11:61793-10727969)x3 copy number gain See cases [RCV000139987] Chr11:61793..10727969 [GRCh38]
Chr11:61793..10749516 [GRCh37]
Chr11:51793..10706092 [NCBI36]
Chr11:11p15.5-15.4
pathogenic
GRCh38/hg38 11p15.5-15.4(chr11:196855-5321874)x3 copy number gain See cases [RCV000142890] Chr11:196855..5321874 [GRCh38]
Chr11:196855..5343104 [GRCh37]
Chr11:186855..5299680 [NCBI36]
Chr11:11p15.5-15.4
pathogenic
GRCh37/hg19 11p15.5-15.4(chr11:193187-5291338)x3 copy number gain See cases [RCV000446036] Chr11:193187..5291338 [GRCh37]
Chr11:11p15.5-15.4
pathogenic
GRCh37/hg19 11p15.5-15.4(chr11:230615-6644927)x3 copy number gain See cases [RCV000449417] Chr11:230615..6644927 [GRCh37]
Chr11:11p15.5-15.4
pathogenic
GRCh37/hg19 11p15.4(chr11:5269595-5275588)x3 copy number gain See cases [RCV000446563] Chr11:5269595..5275588 [GRCh37]
Chr11:11p15.4
benign|likely benign
NM_000184.3(HBG2):c.151TCTGCC[3] (p.51SA[3]) microsatellite not provided [RCV000480534] Chr11:5254444..5254445 [GRCh38]
Chr11:5275674..5275675 [GRCh37]
Chr11:11p15.4
likely pathogenic
GRCh37/hg19 11p15.5-12(chr11:230615-37698540)x3 copy number gain See cases [RCV000511561] Chr11:230615..37698540 [GRCh37]
Chr11:11p15.5-12
pathogenic
GRCh37/hg19 11p15.5-q25(chr11:230616-134938470) copy number gain See cases [RCV000511729] Chr11:230616..134938470 [GRCh37]
Chr11:11p15.5-q25
pathogenic
GRCh37/hg19 11p15.5-q25(chr11:230616-134938470)x3 copy number gain See cases [RCV000510881] Chr11:230616..134938470 [GRCh37]
Chr11:11p15.5-q25
pathogenic
GRCh37/hg19 11p15.5-15.3(chr11:193146-12643136) copy number gain Silver-Russell syndrome 1 [RCV000767567] Chr11:193146..12643136 [GRCh37]
Chr11:11p15.5-15.3
pathogenic
GRCh37/hg19 11p15.5-14.3(chr11:230615-25584362)x3 copy number gain See cases [RCV000512225] Chr11:230615..25584362 [GRCh37]
Chr11:11p15.5-14.3
pathogenic
GRCh37/hg19 11p15.5-13(chr11:230615-31995219)x3 copy number gain See cases [RCV000512477] Chr11:230615..31995219 [GRCh37]
Chr11:11p15.5-13
pathogenic
GRCh37/hg19 11p15.5-15.4(chr11:230615-9704511)x3 copy number gain not provided [RCV000683369] Chr11:230615..9704511 [GRCh37]
Chr11:11p15.5-15.4
pathogenic
GRCh37/hg19 11p15.5-15.1(chr11:230615-17099213)x3 copy number gain not provided [RCV000683372] Chr11:230615..17099213 [GRCh37]
Chr11:11p15.5-15.1
pathogenic
GRCh37/hg19 11p15.5-q25(chr11:198510-134934063)x3 copy number gain not provided [RCV000737348] Chr11:198510..134934063 [GRCh37]
Chr11:11p15.5-q25
pathogenic
GRCh37/hg19 11p15.5-q25(chr11:70864-134938470)x3 copy number gain not provided [RCV000749874] Chr11:70864..134938470 [GRCh37]
Chr11:11p15.5-q25
pathogenic
GRCh37/hg19 11p15.4(chr11:5269640-5275240)x1 copy number loss not provided [RCV000737398] Chr11:5269640..5275240 [GRCh37]
Chr11:11p15.4
benign
NM_000184.3(HBG2):c.85C>A (p.Leu29Met) single nucleotide variant Cyanosis, transient neonatal [RCV000984481] Chr11:5254644 [GRCh38]
Chr11:5275874 [GRCh37]
Chr11:11p15.4
pathogenic
GRCh37/hg19 11p15.5-13(chr11:235934-33826995)x3 copy number gain not provided [RCV001006372] Chr11:235934..33826995 [GRCh37]
Chr11:11p15.5-13
pathogenic
GRCh37/hg19 11p15.4(chr11:5094756-5785959)x3 copy number gain See cases [RCV003317674] Chr11:5094756..5785959 [GRCh37]
Chr11:11p15.4
likely benign
GRCh37/hg19 11p15.4(chr11:5112523-5336304)x1 copy number loss not provided [RCV001006377] Chr11:5112523..5336304 [GRCh37]
Chr11:11p15.4
pathogenic
GRCh37/hg19 11p15.5-15.4(chr11:210300-8664358)x3 copy number gain Silver-Russell syndrome 1 [RCV001263222] Chr11:210300..8664358 [GRCh37]
Chr11:11p15.5-15.4
pathogenic
NM_000184.3(HBG2):c.62T>C (p.Val21Ala) single nucleotide variant not specified [RCV002248953] Chr11:5254667 [GRCh38]
Chr11:5275897 [GRCh37]
Chr11:11p15.4
benign
NM_000184.3(HBG2):c.358G>C (p.Gly120Arg) single nucleotide variant not provided [RCV001812530] Chr11:5253363 [GRCh38]
Chr11:5274593 [GRCh37]
Chr11:11p15.4
uncertain significance
GRCh37/hg19 11p15.5-15.4(chr11:230615-5525355)x3 copy number gain not provided [RCV001825269] Chr11:230615..5525355 [GRCh37]
Chr11:11p15.5-15.4
not provided
GRCh37/hg19 11p15.4(chr11:5221232-5373562) copy number gain not specified [RCV002052911] Chr11:5221232..5373562 [GRCh37]
Chr11:11p15.4
likely pathogenic
NM_000184.3(HBG2):c.397A>C (p.Lys133Gln) single nucleotide variant not provided [RCV002227342] Chr11:5253324 [GRCh38]
Chr11:5274554 [GRCh37]
Chr11:11p15.4
uncertain significance
NM_000184.3(HBG2):c.398A>C (p.Lys133Thr) single nucleotide variant not provided [RCV002227379] Chr11:5253323 [GRCh38]
Chr11:5274553 [GRCh37]
Chr11:11p15.4
uncertain significance
NM_000184.3(HBG2):c.135C>G (p.Ser45Arg) single nucleotide variant not provided [RCV003120186] Chr11:5254472 [GRCh38]
Chr11:5275702 [GRCh37]
Chr11:11p15.4
likely benign
NC_000011.10:g.(499700_4999400)_(5279346_5279697)del deletion Thalassemia, gamma-delta-beta [RCV000015529] Chr11:4999400..5279346 [GRCh38]
Chr11:11p15.5-15.4
pathogenic
GRCh37/hg19 11p15.5-14.2(chr11:230615-26881146)x3 copy number gain See cases [RCV002286351] Chr11:230615..26881146 [GRCh37]
Chr11:11p15.5-14.2
pathogenic
GRCh37/hg19 11p15.5-15.4(chr11:230616-8250724)x3 copy number gain not provided [RCV002472435] Chr11:230616..8250724 [GRCh37]
Chr11:11p15.5-15.4
pathogenic
NM_000184.3(HBG2):c.134G>A (p.Ser45Asn) single nucleotide variant Inborn genetic diseases [RCV002697384] Chr11:5254473 [GRCh38]
Chr11:5275703 [GRCh37]
Chr11:11p15.4
uncertain significance
NM_000184.3(HBG2):c.104T>C (p.Val35Ala) single nucleotide variant Inborn genetic diseases [RCV002850658] Chr11:5254503 [GRCh38]
Chr11:5275733 [GRCh37]
Chr11:11p15.4
uncertain significance
NM_000184.3(HBG2):c.358G>A (p.Gly120Ser) single nucleotide variant Inborn genetic diseases [RCV002677662] Chr11:5253363 [GRCh38]
Chr11:5274593 [GRCh37]
Chr11:11p15.4
uncertain significance
GRCh37/hg19 11p15.5-15.4(chr11:230615-8821443)x3 copy number gain Russell-Silver syndrome [RCV003444025] Chr11:230615..8821443 [GRCh37]
Chr11:11p15.5-15.4
pathogenic
GRCh37/hg19 11p15.4(chr11:5255264-5284702)x1 copy number loss not specified [RCV003986934] Chr11:5255264..5284702 [GRCh37]
Chr11:11p15.4
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:542
Count of miRNA genes:271
Interacting mature miRNAs:285
Transcripts:ENST00000336906, ENST00000380252, ENST00000380259, ENST00000444587
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH11785  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37115,269,560 - 5,269,683UniSTSGRCh37
GRCh37115,274,478 - 5,274,601UniSTSGRCh37
Build 36115,226,136 - 5,226,259RGDNCBI36
Celera115,388,227 - 5,388,350RGD
Celera115,393,151 - 5,393,274UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map17q21-qterUniSTS
Cytogenetic Map11p15.5UniSTS
HuRef114,928,730 - 4,928,853UniSTS
HuRef114,933,648 - 4,933,771UniSTS
GeneMap99-GB4 RH Map1136.42UniSTS
ECD07567  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37115,275,696 - 5,276,374UniSTSGRCh37
GRCh37115,270,772 - 5,271,446UniSTSGRCh37
Build 36115,227,348 - 5,228,022RGDNCBI36
Celera115,389,439 - 5,390,117RGD
Cytogenetic Map11p15.5UniSTS
Cytogenetic Map11p15.4UniSTS
HuRef114,929,942 - 4,930,616UniSTS
HuRef114,934,866 - 4,935,544UniSTS
ECD07826  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37115,274,972 - 5,275,643UniSTSGRCh37
GRCh37115,270,052 - 5,270,719UniSTSGRCh37
Build 36115,226,628 - 5,227,295RGDNCBI36
Celera115,388,719 - 5,389,386RGD
Cytogenetic Map11p15.5UniSTS
Cytogenetic Map11p15.4UniSTS
HuRef114,929,222 - 4,929,889UniSTS
HuRef114,934,142 - 4,934,813UniSTS
ECD08204  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37115,275,696 - 5,276,361UniSTSGRCh37
GRCh37115,270,772 - 5,271,433UniSTSGRCh37
Build 36115,227,348 - 5,228,009RGDNCBI36
Celera115,389,439 - 5,390,104RGD
Cytogenetic Map11p15.5UniSTS
Cytogenetic Map11p15.4UniSTS
HuRef114,929,942 - 4,930,603UniSTS
HuRef114,934,866 - 4,935,531UniSTS
ECD08269  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37115,276,472 - 5,277,131UniSTSGRCh37
Build 36115,233,048 - 5,233,707RGDNCBI36
Celera115,395,101 - 5,395,760RGD
Cytogenetic Map11p15.5UniSTS
HuRef114,935,642 - 4,936,301UniSTS
ECD09628  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37115,274,252 - 5,274,876UniSTSGRCh37
Build 36115,230,828 - 5,231,452RGDNCBI36
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map11p15.5UniSTS
HuRef114,933,422 - 4,934,046UniSTS
ECD22466  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37115,277,538 - 5,277,756UniSTSGRCh37
Build 36115,234,114 - 5,234,332RGDNCBI36
Celera115,396,167 - 5,396,385RGD
Cytogenetic Map11p15.5UniSTS
HuRef114,936,708 - 4,936,926UniSTS
ECD23648  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37115,277,202 - 5,277,384UniSTSGRCh37
Build 36115,233,778 - 5,233,960RGDNCBI36
Celera115,395,831 - 5,396,013RGD
Cytogenetic Map11p15.5UniSTS
HuRef114,936,372 - 4,936,554UniSTS
REN97450  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37115,269,620 - 5,269,868UniSTSGRCh37
GRCh37115,274,538 - 5,274,786UniSTSGRCh37
Build 36115,226,196 - 5,226,444RGDNCBI36
Celera115,388,287 - 5,388,535RGD
Celera115,393,211 - 5,393,459UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map11p15.5UniSTS
HuRef114,928,790 - 4,929,038UniSTS
HuRef114,933,708 - 4,933,956UniSTS
REN97452  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37115,275,352 - 5,275,613UniSTSGRCh37
GRCh37115,270,428 - 5,270,689UniSTSGRCh37
Build 36115,227,004 - 5,227,265RGDNCBI36
Celera115,389,095 - 5,389,356RGD
Cytogenetic Map11p15.5UniSTS
Cytogenetic Map11p15.4UniSTS
HuRef114,929,598 - 4,929,859UniSTS
HuRef114,934,522 - 4,934,783UniSTS
REN97465  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37115,274,099 - 5,274,328UniSTSGRCh37
Build 36115,230,675 - 5,230,904RGDNCBI36
Celera115,392,771 - 5,393,000RGD
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map11p15.5UniSTS
HuRef114,933,269 - 4,933,498UniSTS
REN97466  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37115,274,302 - 5,274,557UniSTSGRCh37
Build 36115,230,878 - 5,231,133RGDNCBI36
Celera115,392,974 - 5,393,230RGD
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map11p15.5UniSTS
HuRef114,933,472 - 4,933,727UniSTS
REN97467  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37115,269,618 - 5,269,869UniSTSGRCh37
GRCh37115,274,536 - 5,274,787UniSTSGRCh37
Build 36115,226,194 - 5,226,445RGDNCBI36
Celera115,388,285 - 5,388,536RGD
Celera115,393,209 - 5,393,460UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map11p15.5UniSTS
HuRef114,928,788 - 4,929,039UniSTS
HuRef114,933,706 - 4,933,957UniSTS
REN97468  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37115,275,226 - 5,275,463UniSTSGRCh37
Build 36115,231,802 - 5,232,039RGDNCBI36
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map11p15.5UniSTS
HuRef114,934,396 - 4,934,633UniSTS
REN97469  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37115,275,386 - 5,275,629UniSTSGRCh37
GRCh37115,270,462 - 5,270,705UniSTSGRCh37
Build 36115,227,038 - 5,227,281RGDNCBI36
Celera115,389,129 - 5,389,372RGD
Cytogenetic Map11p15.5UniSTS
Cytogenetic Map11p15.4UniSTS
HuRef114,929,632 - 4,929,875UniSTS
HuRef114,934,556 - 4,934,799UniSTS
REN97470  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37115,276,262 - 5,276,503UniSTSGRCh37
Build 36115,232,838 - 5,233,079RGDNCBI36
Celera115,394,891 - 5,395,132RGD
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map11p15.5UniSTS
HuRef114,935,432 - 4,935,673UniSTS
REN97471  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37115,276,478 - 5,276,731UniSTSGRCh37
Build 36115,233,054 - 5,233,307RGDNCBI36
Celera115,395,107 - 5,395,360RGD
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map11p15.5UniSTS
HuRef114,935,648 - 4,935,901UniSTS
REN97472  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37115,276,713 - 5,276,947UniSTSGRCh37
Build 36115,233,289 - 5,233,523RGDNCBI36
Celera115,395,342 - 5,395,576RGD
Cytogenetic Map11p15.5UniSTS
HuRef114,935,883 - 4,936,117UniSTS
REN97473  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37115,276,921 - 5,277,192UniSTSGRCh37
Build 36115,233,497 - 5,233,768RGDNCBI36
Celera115,395,550 - 5,395,821RGD
Cytogenetic Map11p15.5UniSTS
HuRef114,936,091 - 4,936,362UniSTS
REN97474  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37115,277,169 - 5,277,417UniSTSGRCh37
Build 36115,233,745 - 5,233,993RGDNCBI36
Celera115,395,798 - 5,396,046RGD
Cytogenetic Map11p15.5UniSTS
HuRef114,936,339 - 4,936,587UniSTS
REN97475  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37115,277,382 - 5,277,625UniSTSGRCh37
Build 36115,233,958 - 5,234,201RGDNCBI36
Celera115,396,011 - 5,396,254RGD
Cytogenetic Map11p15.5UniSTS
HuRef114,936,552 - 4,936,795UniSTS
REN97476  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37115,277,545 - 5,277,784UniSTSGRCh37
Build 36115,234,121 - 5,234,360RGDNCBI36
Celera115,396,174 - 5,396,413RGD
Cytogenetic Map11p15.5UniSTS
HuRef114,936,715 - 4,936,954UniSTS
stSG610846  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37115,274,582 - 5,275,643UniSTSGRCh37
GRCh37115,269,664 - 5,270,719UniSTSGRCh37
Build 36115,226,240 - 5,227,295RGDNCBI36
Celera115,388,331 - 5,389,386RGD
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map11p15.5UniSTS
Cytogenetic Map17q21-qterUniSTS
HuRef114,933,752 - 4,934,813UniSTS
HuRef114,928,834 - 4,929,889UniSTS
stSG610847  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37115,275,625 - 5,276,737UniSTSGRCh37
Build 36115,232,201 - 5,233,313RGDNCBI36
Cytogenetic Map11p15.4UniSTS
HuRef114,934,795 - 4,935,907UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High 29 29
Medium 8 1215 29 1239 20 14 23 1 7 74 17 16
Low 349 1022 570 69 568 59 927 400 1025 38 391 876 10 473 695
Below cutoff 2765 2714 1686 513 388 309 5026 2709 4555 139 1345 1173 204 1455 3384

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_000184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC104389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF110493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK290492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY662983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC010914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC029387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC130457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC130459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ093873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF125207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FJ477265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FJ948815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU324926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM852212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M11427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M15386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M32250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M32723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M91036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M91037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MK836426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MK836427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MK905739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MT802120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OQ995304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U01317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  V00515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X06490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X55656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X55657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000336906   ⟹   ENSP00000338082
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl115,253,188 - 5,254,781 (-)Ensembl
RefSeq Acc Id: ENST00000380252   ⟹   ENSP00000369602
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl115,253,190 - 5,505,605 (-)Ensembl
RefSeq Acc Id: ENST00000444587   ⟹   ENSP00000488218
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl115,253,389 - 5,254,741 (-)Ensembl
RefSeq Acc Id: NM_000184   ⟹   NP_000175
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38115,253,188 - 5,254,781 (-)NCBI
GRCh37115,274,421 - 5,276,011 (-)ENTREZGENE
Build 36115,230,997 - 5,232,587 (-)NCBI Archive
HuRef114,933,591 - 4,935,181 (-)ENTREZGENE
CHM1_1115,273,343 - 5,274,934 (-)NCBI
T2T-CHM13v2.0115,312,544 - 5,314,138 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_000175 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA16331 (Get FASTA)   NCBI Sequence Viewer  
  AAA35955 (Get FASTA)   NCBI Sequence Viewer  
  AAA35957 (Get FASTA)   NCBI Sequence Viewer  
  AAA58492 (Get FASTA)   NCBI Sequence Viewer  
  AAA58610 (Get FASTA)   NCBI Sequence Viewer  
  AAB50159 (Get FASTA)   NCBI Sequence Viewer  
  AAB59428 (Get FASTA)   NCBI Sequence Viewer  
  AAD19655 (Get FASTA)   NCBI Sequence Viewer  
  AAH10914 (Get FASTA)   NCBI Sequence Viewer  
  AAH29387 (Get FASTA)   NCBI Sequence Viewer  
  AAI30458 (Get FASTA)   NCBI Sequence Viewer  
  AAI30460 (Get FASTA)   NCBI Sequence Viewer  
  AAT98611 (Get FASTA)   NCBI Sequence Viewer  
  AAZ04474 (Get FASTA)   NCBI Sequence Viewer  
  ABL67642 (Get FASTA)   NCBI Sequence Viewer  
  ACK58626 (Get FASTA)   NCBI Sequence Viewer  
  ADB93137 (Get FASTA)   NCBI Sequence Viewer  
  ADL14497 (Get FASTA)   NCBI Sequence Viewer  
  ADV36113 (Get FASTA)   NCBI Sequence Viewer  
  BAF83181 (Get FASTA)   NCBI Sequence Viewer  
  CAA23773 (Get FASTA)   NCBI Sequence Viewer  
  CAA39189 (Get FASTA)   NCBI Sequence Viewer  
  CAA39190 (Get FASTA)   NCBI Sequence Viewer  
  CAB58151 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000338082
  ENSP00000338082.4
  ENSP00000369602.2
  ENSP00000488218.1
  ENSP00000488759.1
GenBank Protein P69892 (Get FASTA)   NCBI Sequence Viewer  
  QDL88261 (Get FASTA)   NCBI Sequence Viewer  
  QDL88262 (Get FASTA)   NCBI Sequence Viewer  
  QGP72859 (Get FASTA)   NCBI Sequence Viewer  
  UBK24482 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_000175   ⟸   NM_000184
- UniProtKB: Q96FH7 (UniProtKB/Swiss-Prot),   P62027 (UniProtKB/Swiss-Prot),   P02096 (UniProtKB/Swiss-Prot),   Q96FH6 (UniProtKB/Swiss-Prot),   Q68NH9 (UniProtKB/Swiss-Prot),   Q14491 (UniProtKB/Swiss-Prot),   A8MZE0 (UniProtKB/Swiss-Prot),   P69892 (UniProtKB/Swiss-Prot),   D9YZU9 (UniProtKB/TrEMBL),   D3GKD9 (UniProtKB/TrEMBL),   E7CYP2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000338082   ⟸   ENST00000336906
RefSeq Acc Id: ENSP00000488218   ⟸   ENST00000444587
RefSeq Acc Id: ENSP00000369602   ⟸   ENST00000380252
Protein Domains
Globin family profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P69892-F1-model_v2 AlphaFold P69892 1-147 view protein structure

Promoters
RGD ID:6788982
Promoter ID:HG_KWN:12142
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562
Transcripts:ENST00000380247,   OTTHUMT00000142968,   OTTHUMT00000142969,   UC001MAI.1,   UC001MAJ.1
Position:
Human AssemblyChrPosition (strand)Source
Build 36115,232,461 - 5,232,961 (-)MPROMDB
RGD ID:7219429
Promoter ID:EPDNEW_H15461
Type:initiation region
Name:HBG2_2
Description:hemoglobin subunit gamma 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H15462  EPDNEW_H15463  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38115,253,341 - 5,253,401EPDNEW
RGD ID:7219433
Promoter ID:EPDNEW_H15462
Type:initiation region
Name:HBG2_3
Description:hemoglobin subunit gamma 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H15461  EPDNEW_H15463  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38115,254,388 - 5,254,448EPDNEW
RGD ID:7219435
Promoter ID:EPDNEW_H15463
Type:initiation region
Name:HBG2_1
Description:hemoglobin subunit gamma 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H15461  EPDNEW_H15462  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38115,254,781 - 5,254,841EPDNEW
RGD ID:6849686
Promoter ID:EP11107
Type:single initiation site
Name:HS_HBG2
Description:^G gamma-globin.
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Notes:homology_group=Homology group 33; Mammalian beta-like globins group 2.
Tissues & Cell Lines:fetus, liver, erythroid cells
Experiment Methods:Sequencing of a full-length cDNA; Nuclease protection; transgenic organisms; Direct RNA sequencing; experiments performed with closely related; gene
Position:No map positions available.

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:4832 AgrOrtholog
COSMIC HBG2 COSMIC
Ensembl Genes ENSG00000196565 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSG00000213934 UniProtKB/TrEMBL
Ensembl Transcript ENST00000336906 ENTREZGENE
  ENST00000336906.6 UniProtKB/Swiss-Prot
  ENST00000380252.6 UniProtKB/TrEMBL
  ENST00000444587.1 UniProtKB/TrEMBL
  ENST00000632727.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.490.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000196565 GTEx
  ENSG00000213934 GTEx
HGNC ID HGNC:4832 ENTREZGENE
Human Proteome Map HBG2 Human Proteome Map
InterPro Globin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Globin-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Globin/Proto UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Haemoglobin_b UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:3048 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 3048 ENTREZGENE
OMIM 142250 OMIM
PANTHER HEMOGLOBIN FAMILY MEMBER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HEMOGLOBIN SUBUNIT GAMMA-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Globin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA29207 PharmGKB
PRINTS BETAHAEM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE GLOBIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46458 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0J9YYA3_HUMAN UniProtKB/TrEMBL
  A0A515HFS3_HUMAN UniProtKB/TrEMBL
  A0A515HFT7_HUMAN UniProtKB/TrEMBL
  A1EGU3_HUMAN UniProtKB/TrEMBL
  A8MZE0 ENTREZGENE
  B7UCU6_HUMAN UniProtKB/TrEMBL
  D3GKD9 ENTREZGENE, UniProtKB/TrEMBL
  D9YZU9 ENTREZGENE, UniProtKB/TrEMBL
  E7CYP2 ENTREZGENE, UniProtKB/TrEMBL
  E9PBW4_HUMAN UniProtKB/TrEMBL
  HBG2_HUMAN UniProtKB/Swiss-Prot
  P02096 ENTREZGENE
  P62027 ENTREZGENE
  P69892 ENTREZGENE
  Q14491 ENTREZGENE
  Q68NH9 ENTREZGENE
  Q96FH6 ENTREZGENE
  Q96FH7 ENTREZGENE
  Q9UNL6_HUMAN UniProtKB/TrEMBL
UniProt Secondary A8MZE0 UniProtKB/Swiss-Prot
  P02096 UniProtKB/Swiss-Prot
  P62027 UniProtKB/Swiss-Prot
  Q14491 UniProtKB/Swiss-Prot
  Q68NH9 UniProtKB/Swiss-Prot
  Q96FH6 UniProtKB/Swiss-Prot
  Q96FH7 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-01 HBG2  hemoglobin subunit gamma 2  HBG2  hemoglobin, gamma G  Symbol and/or name change 5135510 APPROVED