LSM14B (LSM family member 14B) - Rat Genome Database

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Gene: LSM14B (LSM family member 14B) Homo sapiens
Analyze
Symbol: LSM14B
Name: LSM family member 14B
RGD ID: 1351489
HGNC Page HGNC:15887
Description: Enables RNA binding activity. Predicted to be involved in regulation of translation. Predicted to be part of ribonucleoprotein complex.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: bA11M20.3; C20orf40; chromosome 20 open reading frame 40; FAM61B; family with sequence similarity 61, member B; FLJ25473; FT005; hRAP55B; LSM13; LSM14 homolog B; LSM14B, SCD6 homolog B; MGC61931; Putative uncharacterized protein C20orf40; RAP55B; RNA-associated protein 55B
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382062,122,475 - 62,135,374 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2062,122,461 - 62,135,374 (+)EnsemblGRCh38hg38GRCh38
GRCh372060,697,531 - 60,710,430 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362060,130,912 - 60,143,829 (+)NCBINCBI36Build 36hg18NCBI36
Build 342060,131,587 - 60,142,908NCBI
Celera2057,432,693 - 57,445,609 (+)NCBICelera
Cytogenetic Map20q13.33NCBI
HuRef2057,474,993 - 57,487,913 (+)NCBIHuRef
CHM1_12060,598,581 - 60,611,498 (+)NCBICHM1_1
T2T-CHM13v2.02063,913,343 - 63,926,242 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11780052   PMID:12477932   PMID:14702039   PMID:15225602   PMID:15489334   PMID:16169070   PMID:16344560   PMID:18976975   PMID:21873635   PMID:22681889   PMID:24163370   PMID:24639526  
PMID:24778252   PMID:24981860   PMID:25437307   PMID:25921289   PMID:26186194   PMID:26496610   PMID:26638075   PMID:26673895   PMID:26687479   PMID:26760575   PMID:26777405   PMID:26885983  
PMID:27634302   PMID:28514442   PMID:29229926   PMID:29298432   PMID:29395067   PMID:29509190   PMID:29802200   PMID:29845934   PMID:30975701   PMID:31048545   PMID:31332168   PMID:31422817  
PMID:31527615   PMID:32296183   PMID:32989298   PMID:32994395   PMID:33306668   PMID:33658012   PMID:33961781   PMID:34079125   PMID:34189442   PMID:34316702   PMID:34578187   PMID:34597346  
PMID:34709727   PMID:34728620   PMID:34732716   PMID:34795231   PMID:35013218   PMID:35140242   PMID:35271311   PMID:35439318   PMID:35446349   PMID:35831314   PMID:35944360   PMID:36215168  
PMID:36232890   PMID:36244648   PMID:36526897   PMID:36537216  


Genomics

Comparative Map Data
LSM14B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382062,122,475 - 62,135,374 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2062,122,461 - 62,135,374 (+)EnsemblGRCh38hg38GRCh38
GRCh372060,697,531 - 60,710,430 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362060,130,912 - 60,143,829 (+)NCBINCBI36Build 36hg18NCBI36
Build 342060,131,587 - 60,142,908NCBI
Celera2057,432,693 - 57,445,609 (+)NCBICelera
Cytogenetic Map20q13.33NCBI
HuRef2057,474,993 - 57,487,913 (+)NCBIHuRef
CHM1_12060,598,581 - 60,611,498 (+)NCBICHM1_1
T2T-CHM13v2.02063,913,343 - 63,926,242 (+)NCBIT2T-CHM13v2.0
Lsm14b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392179,666,770 - 179,677,254 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2179,666,780 - 179,677,258 (+)EnsemblGRCm39 Ensembl
GRCm382180,024,900 - 180,035,466 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2180,024,987 - 180,035,465 (+)EnsemblGRCm38mm10GRCm38
MGSCv372179,759,692 - 179,770,166 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362179,955,806 - 179,964,064 (+)NCBIMGSCv36mm8
Celera2184,109,492 - 184,120,048 (+)NCBICelera
Cytogenetic Map2H4NCBI
cM Map2102.54NCBI
Lsm14b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83187,503,251 - 187,514,041 (+)NCBIGRCr8
mRatBN7.23167,125,633 - 167,136,417 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3167,125,628 - 167,136,432 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.03175,408,433 - 175,419,180 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3175,408,629 - 175,417,610 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03181,699,503 - 181,710,240 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera3165,443,306 - 165,453,870 (-)NCBICelera
Cytogenetic Map3q43NCBI
Lsm14b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555281,888,946 - 1,898,833 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555281,889,016 - 1,901,051 (-)NCBIChiLan1.0ChiLan1.0
LSM14B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22167,903,806 - 67,916,769 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12067,896,936 - 67,909,889 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02058,488,140 - 58,501,094 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12059,808,993 - 59,821,192 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2059,806,927 - 59,819,284 (+)Ensemblpanpan1.1panPan2
LSM14B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12446,170,214 - 46,180,430 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2446,169,790 - 46,179,532 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2445,406,314 - 45,417,690 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02447,025,777 - 47,037,158 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2447,024,979 - 47,036,260 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12446,127,386 - 46,138,751 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02446,250,333 - 46,261,685 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02447,004,515 - 47,015,933 (+)NCBIUU_Cfam_GSD_1.0
Lsm14b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640194,345,322 - 194,354,281 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365149,798,912 - 9,807,909 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365149,798,966 - 9,807,924 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LSM14B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1761,553,971 - 61,564,431 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11761,553,953 - 61,566,504 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21769,084,357 - 69,090,568 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LSM14B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.122,102,416 - 2,115,298 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl22,104,281 - 2,115,142 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605050,052,308 - 50,065,206 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lsm14b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474127,998,581 - 28,010,543 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474127,998,800 - 28,010,548 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in LSM14B
19 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 20q13.12-13.33(chr20:44787704-64277321)x3 copy number gain See cases [RCV000053035] Chr20:44787704..64277321 [GRCh38]
Chr20:43416345..62908674 [GRCh37]
Chr20:42849759..62379118 [NCBI36]
Chr20:20q13.12-13.33		 pathogenic
GRCh38/hg38 20q13.32-13.33(chr20:59041966-64277321)x3 copy number gain See cases [RCV000135805] Chr20:59041966..64277321 [GRCh38]
Chr20:57617021..62908674 [GRCh37]
Chr20:57050416..62379118 [NCBI36]
Chr20:20q13.32-13.33		 pathogenic
GRCh38/hg38 20p13-q13.33(chr20:99557-64277321)x3 copy number gain See cases [RCV000135859] Chr20:99557..64277321 [GRCh38]
Chr20:80198..62908674 [GRCh37]
Chr20:28198..62379118 [NCBI36]
Chr20:20p13-q13.33		 pathogenic
GRCh38/hg38 20q13.2-13.33(chr20:56198032-64277321)x3 copy number gain See cases [RCV000138035] Chr20:56198032..64277321 [GRCh38]
Chr20:54773088..62908674 [GRCh37]
Chr20:54206495..62379118 [NCBI36]
Chr20:20q13.2-13.33		 pathogenic
GRCh38/hg38 20q13.33(chr20:61588953-62241744)x3 copy number gain See cases [RCV000137839] Chr20:61588953..62241744 [GRCh38]
Chr20:60164009..60816800 [GRCh37]
Chr20:59597404..60250195 [NCBI36]
Chr20:20q13.33		 uncertain significance
GRCh38/hg38 20q13.33(chr20:61326549-64277326)x3 copy number gain See cases [RCV000139100] Chr20:61326549..64277326 [GRCh38]
Chr20:59901605..62908679 [GRCh37]
Chr20:59335000..62379123 [NCBI36]
Chr20:20q13.33		 pathogenic
GRCh38/hg38 20q13.31-13.33(chr20:57229415-64273089)x3 copy number gain See cases [RCV000141347] Chr20:57229415..64273089 [GRCh38]
Chr20:55804471..62904442 [GRCh37]
Chr20:55237878..62374886 [NCBI36]
Chr20:20q13.31-13.33		 pathogenic
GRCh38/hg38 20q13.2-13.33(chr20:53236165-64284202)x3 copy number gain See cases [RCV000143584] Chr20:53236165..64284202 [GRCh38]
Chr20:51852704..62915555 [GRCh37]
Chr20:51286111..62385999 [NCBI36]
Chr20:20q13.2-13.33		 likely pathogenic
GRCh37/hg19 20q13.33(chr20:60473339-62915555)x3 copy number gain See cases [RCV000446009] Chr20:60473339..62915555 [GRCh37]
Chr20:20q13.33		 uncertain significance
GRCh37/hg19 20q13.2-13.33(chr20:51542616-62915555)x3 copy number gain See cases [RCV000511980] Chr20:51542616..62915555 [GRCh37]
Chr20:20q13.2-13.33		 likely pathogenic
GRCh37/hg19 20p13-q13.33(chr20:61569-62915555)x3 copy number gain See cases [RCV000510832] Chr20:61569..62915555 [GRCh37]
Chr20:20p13-q13.33		 pathogenic
NM_144703.3(LSM14B):c.1006G>A (p.Ala336Thr) single nucleotide variant not specified [RCV004299720] Chr20:62133309 [GRCh38]
Chr20:60708365 [GRCh37]
Chr20:20q13.33		 uncertain significance
GRCh37/hg19 20p13-q13.33(chr20:61569-62915555) copy number gain See cases [RCV000512450] Chr20:61569..62915555 [GRCh37]
Chr20:20p13-q13.33		 pathogenic
GRCh37/hg19 20q13.33(chr20:60691126-60920798)x3 copy number gain not provided [RCV000684108] Chr20:60691126..60920798 [GRCh37]
Chr20:20q13.33		 uncertain significance
GRCh37/hg19 20p13-q13.33(chr20:63244-62961294)x3 copy number gain not provided [RCV000741059] Chr20:63244..62961294 [GRCh37]
Chr20:20p13-q13.33		 pathogenic
GRCh37/hg19 20q13.33(chr20:60053234-62961294)x3 copy number gain not provided [RCV000741328] Chr20:60053234..62961294 [GRCh37]
Chr20:20q13.33		 pathogenic
GRCh37/hg19 20q13.33(chr20:60063645-62961294)x3 copy number gain not provided [RCV000741329] Chr20:60063645..62961294 [GRCh37]
Chr20:20q13.33		 pathogenic
GRCh37/hg19 20p13-q13.33(chr20:63244-62912463)x3 copy number gain not provided [RCV000741057] Chr20:63244..62912463 [GRCh37]
Chr20:20p13-q13.33		 pathogenic
GRCh37/hg19 20p13-q13.33(chr20:63244-62948788)x3 copy number gain not provided [RCV000741058] Chr20:63244..62948788 [GRCh37]
Chr20:20p13-q13.33		 pathogenic
GRCh37/hg19 20q13.2-13.33(chr20:54143747-62194881) copy number gain not provided [RCV000767669] Chr20:54143747..62194881 [GRCh37]
Chr20:20q13.2-13.33		 pathogenic
NM_144703.3(LSM14B):c.842A>G (p.Lys281Arg) single nucleotide variant not specified [RCV004311365] Chr20:62131362 [GRCh38]
Chr20:60706418 [GRCh37]
Chr20:20q13.33		 uncertain significance
GRCh37/hg19 20q13.33(chr20:60621074-62915555)x3 copy number gain not provided [RCV002473575] Chr20:60621074..62915555 [GRCh37]
Chr20:20q13.33		 uncertain significance
GRCh37/hg19 20q13.31-13.33(chr20:55743522-62032989)x3 copy number gain not provided [RCV001007097] Chr20:55743522..62032989 [GRCh37]
Chr20:20q13.31-13.33		 pathogenic
GRCh37/hg19 20q13.32-13.33(chr20:56788101-62762405)x3 copy number gain not provided [RCV001007098] Chr20:56788101..62762405 [GRCh37]
Chr20:20q13.32-13.33		 pathogenic
GRCh37/hg19 20q13.2-13.33(chr20:51799648-62916626)x3 copy number gain not provided [RCV001537917] Chr20:51799648..62916626 [GRCh37]
Chr20:20q13.2-13.33		 pathogenic
GRCh37/hg19 20q13.32-13.33(chr20:56835739-62915555) copy number gain not specified [RCV002052713] Chr20:56835739..62915555 [GRCh37]
Chr20:20q13.32-13.33		 pathogenic
GRCh37/hg19 20q13.33(chr20:60473339-62915555) copy number gain not specified [RCV002052714] Chr20:60473339..62915555 [GRCh37]
Chr20:20q13.33		 uncertain significance
Single allele duplication not specified [RCV002286379] Chr20:61800345..63644611 [GRCh38]
Chr20:20q13.33		 uncertain significance
NM_144703.3(LSM14B):c.412G>A (p.Ala138Thr) single nucleotide variant not specified [RCV004320621] Chr20:62126424 [GRCh38]
Chr20:60701480 [GRCh37]
Chr20:20q13.33		 uncertain significance
NM_144703.3(LSM14B):c.1088G>A (p.Arg363Gln) single nucleotide variant not specified [RCV004098577] Chr20:62133391 [GRCh38]
Chr20:60708447 [GRCh37]
Chr20:20q13.33		 uncertain significance
NM_144703.3(LSM14B):c.337C>T (p.Pro113Ser) single nucleotide variant not specified [RCV004235071] Chr20:62126349 [GRCh38]
Chr20:60701405 [GRCh37]
Chr20:20q13.33		 uncertain significance
NM_144703.3(LSM14B):c.1061G>A (p.Arg354His) single nucleotide variant not specified [RCV004153604] Chr20:62133364 [GRCh38]
Chr20:60708420 [GRCh37]
Chr20:20q13.33		 uncertain significance
NM_144703.3(LSM14B):c.1132C>T (p.His378Tyr) single nucleotide variant not specified [RCV004197177] Chr20:62133435 [GRCh38]
Chr20:60708491 [GRCh37]
Chr20:20q13.33		 uncertain significance
NM_144703.3(LSM14B):c.508A>G (p.Asn170Asp) single nucleotide variant not specified [RCV004139623] Chr20:62129865 [GRCh38]
Chr20:60704921 [GRCh37]
Chr20:20q13.33		 uncertain significance
NM_144703.3(LSM14B):c.713G>A (p.Arg238His) single nucleotide variant not specified [RCV004206101] Chr20:62130569 [GRCh38]
Chr20:60705625 [GRCh37]
Chr20:20q13.33		 uncertain significance
NM_144703.3(LSM14B):c.659A>G (p.Gln220Arg) single nucleotide variant not specified [RCV004080743] Chr20:62130282 [GRCh38]
Chr20:60705338 [GRCh37]
Chr20:20q13.33		 uncertain significance
NM_144703.3(LSM14B):c.1066C>T (p.Arg356Cys) single nucleotide variant not specified [RCV004126173] Chr20:62133369 [GRCh38]
Chr20:60708425 [GRCh37]
Chr20:20q13.33		 uncertain significance
NM_144703.3(LSM14B):c.341A>G (p.Tyr114Cys) single nucleotide variant not specified [RCV004096686] Chr20:62126353 [GRCh38]
Chr20:60701409 [GRCh37]
Chr20:20q13.33		 uncertain significance
NM_144703.3(LSM14B):c.733A>G (p.Asn245Asp) single nucleotide variant not specified [RCV004303349] Chr20:62130589 [GRCh38]
Chr20:60705645 [GRCh37]
Chr20:20q13.33		 uncertain significance
NM_144703.3(LSM14B):c.370G>A (p.Gly124Ser) single nucleotide variant not specified [RCV004279058] Chr20:62126382 [GRCh38]
Chr20:60701438 [GRCh37]
Chr20:20q13.33		 likely benign
NM_144703.3(LSM14B):c.584A>G (p.Lys195Arg) single nucleotide variant not specified [RCV004263224] Chr20:62129941 [GRCh38]
Chr20:60704997 [GRCh37]
Chr20:20q13.33		 uncertain significance
NM_144703.3(LSM14B):c.1118G>A (p.Arg373His) single nucleotide variant not specified [RCV004257268] Chr20:62133421 [GRCh38]
Chr20:60708477 [GRCh37]
Chr20:20q13.33		 uncertain significance
NM_144703.3(LSM14B):c.362C>T (p.Ala121Val) single nucleotide variant not specified [RCV004263829] Chr20:62126374 [GRCh38]
Chr20:60701430 [GRCh37]
Chr20:20q13.33		 uncertain significance
GRCh37/hg19 20q13.2-13.33(chr20:52773668-62965020)x3 copy number gain See cases [RCV003329549] Chr20:52773668..62965020 [GRCh37]
Chr20:20q13.2-13.33		 uncertain significance
NM_144703.3(LSM14B):c.548C>T (p.Thr183Met) single nucleotide variant not specified [RCV004335730] Chr20:62129905 [GRCh38]
Chr20:60704961 [GRCh37]
Chr20:20q13.33		 likely benign
NM_144703.3(LSM14B):c.904G>A (p.Glu302Lys) single nucleotide variant not specified [RCV004357247] Chr20:62131424 [GRCh38]
Chr20:60706480 [GRCh37]
Chr20:20q13.33		 uncertain significance
NM_144703.3(LSM14B):c.1115G>A (p.Arg372His) single nucleotide variant not specified [RCV004408177] Chr20:62133418 [GRCh38]
Chr20:60708474 [GRCh37]
Chr20:20q13.33		 uncertain significance
NM_144703.3(LSM14B):c.380C>T (p.Ala127Val) single nucleotide variant not specified [RCV004408179] Chr20:62126392 [GRCh38]
Chr20:60701448 [GRCh37]
Chr20:20q13.33		 uncertain significance
NM_144703.3(LSM14B):c.574C>T (p.Pro192Ser) single nucleotide variant not specified [RCV004408180] Chr20:62129931 [GRCh38]
Chr20:60704987 [GRCh37]
Chr20:20q13.33		 uncertain significance
NM_144703.3(LSM14B):c.619C>G (p.Gln207Glu) single nucleotide variant not specified [RCV004408181] Chr20:62130242 [GRCh38]
Chr20:60705298 [GRCh37]
Chr20:20q13.33		 uncertain significance
NM_144703.3(LSM14B):c.868C>G (p.Leu290Val) single nucleotide variant not specified [RCV004408182] Chr20:62131388 [GRCh38]
Chr20:60706444 [GRCh37]
Chr20:20q13.33		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1839
Count of miRNA genes:797
Interacting mature miRNAs:931
Transcripts:ENST00000253001, ENST00000279068, ENST00000279069, ENST00000361670, ENST00000370915, ENST00000400318
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH92552  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372060,710,225 - 60,710,384UniSTSGRCh37
Build 362060,143,620 - 60,143,779RGDNCBI36
Celera2057,445,400 - 57,445,559RGD
Cytogenetic Map20q13.33UniSTS
HuRef2057,487,704 - 57,487,863UniSTS
GeneMap99-GB4 RH Map20348.82UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 2426 2432 1622 524 1571 365 4353 2066 3438 388 1458 1610 175 1 1190 2785 5 2
Low 13 559 104 100 379 100 4 131 296 31 2 3 14 3 1
Below cutoff 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_144703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005260302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011528605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011528606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011528607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011528608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011528609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011528611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011528612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011528613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011528614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017027688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017027689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024451839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024451840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024451841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024451842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024451843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024451844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047439933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047439934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047439935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054323086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054323087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054323088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054323089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054323090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054323091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054323092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054323093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054323094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054323095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054323096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054323097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054323098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008485239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008485240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_936508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_936509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF165185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF172328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK058202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK298748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL078633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL137077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC035702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC054888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC057387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM547301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX370449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX375905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX166280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB336439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000279068   ⟹   ENSP00000279068
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2062,122,475 - 62,135,374 (+)Ensembl
RefSeq Acc Id: ENST00000279069   ⟹   ENSP00000279069
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2062,122,527 - 62,130,605 (+)Ensembl
RefSeq Acc Id: ENST00000361670   ⟹   ENSP00000355209
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2062,123,152 - 62,131,506 (+)Ensembl
RefSeq Acc Id: ENST00000370915   ⟹   ENSP00000359953
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2062,122,461 - 62,128,030 (+)Ensembl
RefSeq Acc Id: ENST00000400318   ⟹   ENSP00000383172
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2062,122,482 - 62,130,666 (+)Ensembl
RefSeq Acc Id: NM_144703   ⟹   NP_653304
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382062,122,475 - 62,135,374 (+)NCBI
GRCh372060,697,517 - 60,710,434 (+)RGD
Build 362060,130,912 - 60,143,829 (+)NCBI Archive
Celera2057,432,693 - 57,445,609 (+)RGD
HuRef2057,474,993 - 57,487,913 (+)ENTREZGENE
CHM1_12060,598,581 - 60,611,498 (+)NCBI
T2T-CHM13v2.02063,913,343 - 63,926,242 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005260302   ⟹   XP_005260359
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382062,122,475 - 62,135,374 (+)NCBI
GRCh372060,697,517 - 60,710,434 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011528605   ⟹   XP_011526907
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382062,122,475 - 62,135,374 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011528606   ⟹   XP_011526908
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382062,122,475 - 62,135,374 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011528607   ⟹   XP_011526909
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382062,122,475 - 62,135,374 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011528608   ⟹   XP_011526910
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382062,122,475 - 62,135,374 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011528609   ⟹   XP_011526911
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382062,122,475 - 62,135,374 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011528611   ⟹   XP_011526913
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382062,122,475 - 62,135,374 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011528612   ⟹   XP_011526914
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382062,123,105 - 62,135,374 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011528613   ⟹   XP_011526915
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382062,123,105 - 62,135,374 (+)NCBI
Sequence:
RefSeq Acc Id: XM_024451839   ⟹   XP_024307607
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382062,122,475 - 62,135,374 (+)NCBI
Sequence:
RefSeq Acc Id: XM_024451840   ⟹   XP_024307608
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382062,123,105 - 62,135,374 (+)NCBI
Sequence:
RefSeq Acc Id: XM_024451841   ⟹   XP_024307609
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382062,123,105 - 62,135,374 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047439933   ⟹   XP_047295889
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382062,123,105 - 62,135,374 (+)NCBI
RefSeq Acc Id: XM_047439934   ⟹   XP_047295890
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382062,123,105 - 62,135,374 (+)NCBI
RefSeq Acc Id: XM_047439935   ⟹   XP_047295891
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382062,124,692 - 62,135,374 (+)NCBI
RefSeq Acc Id: XM_054323086   ⟹   XP_054179061
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02063,913,343 - 63,926,242 (+)NCBI
RefSeq Acc Id: XM_054323087   ⟹   XP_054179062
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02063,913,343 - 63,926,242 (+)NCBI
RefSeq Acc Id: XM_054323088   ⟹   XP_054179063
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02063,913,343 - 63,926,242 (+)NCBI
RefSeq Acc Id: XM_054323089   ⟹   XP_054179064
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02063,913,343 - 63,926,242 (+)NCBI
RefSeq Acc Id: XM_054323090   ⟹   XP_054179065
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02063,913,343 - 63,926,242 (+)NCBI
RefSeq Acc Id: XM_054323091   ⟹   XP_054179066
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02063,913,343 - 63,926,242 (+)NCBI
RefSeq Acc Id: XM_054323092   ⟹   XP_054179067
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02063,913,343 - 63,926,242 (+)NCBI
RefSeq Acc Id: XM_054323093   ⟹   XP_054179068
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02063,913,343 - 63,926,242 (+)NCBI
RefSeq Acc Id: XM_054323094   ⟹   XP_054179069
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02063,914,010 - 63,926,242 (+)NCBI
RefSeq Acc Id: XM_054323095   ⟹   XP_054179070
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02063,913,951 - 63,926,242 (+)NCBI
RefSeq Acc Id: XM_054323096   ⟹   XP_054179071
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02063,914,030 - 63,926,242 (+)NCBI
RefSeq Acc Id: XM_054323097   ⟹   XP_054179072
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02063,913,958 - 63,926,242 (+)NCBI
RefSeq Acc Id: XM_054323098   ⟹   XP_054179073
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02063,915,560 - 63,926,242 (+)NCBI
RefSeq Acc Id: XR_008485239
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02063,913,343 - 63,924,249 (+)NCBI
RefSeq Acc Id: XR_008485240
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02063,913,343 - 63,924,249 (+)NCBI
RefSeq Acc Id: XR_936508
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382062,122,475 - 62,133,380 (+)NCBI
Sequence:
RefSeq Acc Id: XR_936509
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382062,122,475 - 62,133,380 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_653304 (Get FASTA)   NCBI Sequence Viewer  
  XP_005260359 (Get FASTA)   NCBI Sequence Viewer  
  XP_011526907 (Get FASTA)   NCBI Sequence Viewer  
  XP_011526908 (Get FASTA)   NCBI Sequence Viewer  
  XP_011526909 (Get FASTA)   NCBI Sequence Viewer  
  XP_011526910 (Get FASTA)   NCBI Sequence Viewer  
  XP_011526911 (Get FASTA)   NCBI Sequence Viewer  
  XP_011526913 (Get FASTA)   NCBI Sequence Viewer  
  XP_011526914 (Get FASTA)   NCBI Sequence Viewer  
  XP_011526915 (Get FASTA)   NCBI Sequence Viewer  
  XP_024307607 (Get FASTA)   NCBI Sequence Viewer  
  XP_024307608 (Get FASTA)   NCBI Sequence Viewer  
  XP_024307609 (Get FASTA)   NCBI Sequence Viewer  
  XP_047295889 (Get FASTA)   NCBI Sequence Viewer  
  XP_047295890 (Get FASTA)   NCBI Sequence Viewer  
  XP_047295891 (Get FASTA)   NCBI Sequence Viewer  
  XP_054179061 (Get FASTA)   NCBI Sequence Viewer  
  XP_054179062 (Get FASTA)   NCBI Sequence Viewer  
  XP_054179063 (Get FASTA)   NCBI Sequence Viewer  
  XP_054179064 (Get FASTA)   NCBI Sequence Viewer  
  XP_054179065 (Get FASTA)   NCBI Sequence Viewer  
  XP_054179066 (Get FASTA)   NCBI Sequence Viewer  
  XP_054179067 (Get FASTA)   NCBI Sequence Viewer  
  XP_054179068 (Get FASTA)   NCBI Sequence Viewer  
  XP_054179069 (Get FASTA)   NCBI Sequence Viewer  
  XP_054179070 (Get FASTA)   NCBI Sequence Viewer  
  XP_054179071 (Get FASTA)   NCBI Sequence Viewer  
  XP_054179072 (Get FASTA)   NCBI Sequence Viewer  
  XP_054179073 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAD46654 (Get FASTA)   NCBI Sequence Viewer  
  AAD52585 (Get FASTA)   NCBI Sequence Viewer  
  AAH57387 (Get FASTA)   NCBI Sequence Viewer  
  BAB71714 (Get FASTA)   NCBI Sequence Viewer  
  BAG60891 (Get FASTA)   NCBI Sequence Viewer  
  EAW75401 (Get FASTA)   NCBI Sequence Viewer  
  EAW75402 (Get FASTA)   NCBI Sequence Viewer  
  EAW75403 (Get FASTA)   NCBI Sequence Viewer  
  EAW75404 (Get FASTA)   NCBI Sequence Viewer  
  EAW75405 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000279068
  ENSP00000279068.5
  ENSP00000279069.7
  ENSP00000355209
  ENSP00000355209.3
  ENSP00000359953.1
  ENSP00000383172.2
GenBank Protein Q9BX40 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_653304   ⟸   NM_144703
- UniProtKB: Q6PFW8 (UniProtKB/Swiss-Prot),   Q96LH8 (UniProtKB/Swiss-Prot),   Q9BX40 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_005260359   ⟸   XM_005260302
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_011526909   ⟸   XM_011528607
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_011526907   ⟸   XM_011528605
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011526910   ⟸   XM_011528608
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_011526908   ⟸   XM_011528606
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_011526913   ⟸   XM_011528611
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_011526911   ⟸   XM_011528609
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_011526915   ⟸   XM_011528613
- Peptide Label: isoform X12
- UniProtKB: Q5TBP9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011526914   ⟸   XM_011528612
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_024307607   ⟸   XM_024451839
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_024307608   ⟸   XM_024451840
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_024307609   ⟸   XM_024451841
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: ENSP00000359953   ⟸   ENST00000370915
RefSeq Acc Id: ENSP00000355209   ⟸   ENST00000361670
RefSeq Acc Id: ENSP00000383172   ⟸   ENST00000400318
RefSeq Acc Id: ENSP00000279069   ⟸   ENST00000279069
RefSeq Acc Id: ENSP00000279068   ⟸   ENST00000279068
RefSeq Acc Id: XP_047295889   ⟸   XM_047439933
- Peptide Label: isoform X8
RefSeq Acc Id: XP_047295890   ⟸   XM_047439934
- Peptide Label: isoform X8
RefSeq Acc Id: XP_047295891   ⟸   XM_047439935
- Peptide Label: isoform X13
RefSeq Acc Id: XP_054179061   ⟸   XM_054323086
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054179063   ⟸   XM_054323088
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054179064   ⟸   XM_054323089
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054179066   ⟸   XM_054323091
- Peptide Label: isoform X6
RefSeq Acc Id: XP_054179067   ⟸   XM_054323092
- Peptide Label: isoform X7
RefSeq Acc Id: XP_054179062   ⟸   XM_054323087
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054179065   ⟸   XM_054323090
- Peptide Label: isoform X5
RefSeq Acc Id: XP_054179068   ⟸   XM_054323093
- Peptide Label: isoform X9
RefSeq Acc Id: XP_054179070   ⟸   XM_054323095
- Peptide Label: isoform X10
RefSeq Acc Id: XP_054179072   ⟸   XM_054323097
- Peptide Label: isoform X12
RefSeq Acc Id: XP_054179069   ⟸   XM_054323094
- Peptide Label: isoform X10
RefSeq Acc Id: XP_054179071   ⟸   XM_054323096
- Peptide Label: isoform X11
RefSeq Acc Id: XP_054179073   ⟸   XM_054323098
- Peptide Label: isoform X13
Protein Domains
DFDF   FFD box profile   Sm

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9BX40-F1-model_v2 AlphaFold Q9BX40 1-385 view protein structure

Promoters
RGD ID:6798724
Promoter ID:HG_KWN:40063
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000253001,   ENST00000279069,   ENST00000361670,   ENST00000370906,   ENST00000400318,   NM_144703,   OTTHUMT00000079996,   OTTHUMT00000080001,   UC002YBT.2,   UC002YBV.2,   UC010GJX.1,   UC010GJZ.1
Position:
Human AssemblyChrPosition (strand)Source
Build 362060,130,136 - 60,131,487 (+)MPROMDB
RGD ID:13602298
Promoter ID:EPDNEW_H27333
Type:initiation region
Name:LSM14B_1
Description:LSM family member 14B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh382062,122,475 - 62,122,535EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:15887 AgrOrtholog
COSMIC LSM14B COSMIC
Ensembl Genes ENSG00000149657 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000279068 ENTREZGENE
  ENST00000279068.11 UniProtKB/Swiss-Prot
  ENST00000279069.11 UniProtKB/TrEMBL
  ENST00000361670 ENTREZGENE
  ENST00000361670.3 UniProtKB/TrEMBL
  ENST00000370915.5 UniProtKB/TrEMBL
  ENST00000400318.6 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.100 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000149657 GTEx
HGNC ID HGNC:15887 ENTREZGENE
Human Proteome Map LSM14B Human Proteome Map
InterPro DFDF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FDF_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FFD_box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IPR047575 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Lsm14-like_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LSM_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TFG_box UniProtKB/Swiss-Prot
KEGG Report hsa:149986 UniProtKB/Swiss-Prot
NCBI Gene 149986 ENTREZGENE
OMIM 620689 OMIM
PANTHER PROTEIN LSM14 HOMOLOG B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SCD6 PROTEIN-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam FDF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LSM14 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA25754 PharmGKB
PROSITE DFDF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FFD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PS52002 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TFG UniProtKB/Swiss-Prot
SMART FDF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LSM14 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50182 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0C4DFV2_HUMAN UniProtKB/TrEMBL
  LS14B_HUMAN UniProtKB/Swiss-Prot
  Q5TBP9 ENTREZGENE, UniProtKB/TrEMBL
  Q5TBQ0_HUMAN UniProtKB/TrEMBL
  Q5TBQ1_HUMAN UniProtKB/TrEMBL
  Q6PFW8 ENTREZGENE
  Q96LH8 ENTREZGENE
  Q9BX40 ENTREZGENE
UniProt Secondary A8MVB1 UniProtKB/TrEMBL
  Q6PFW8 UniProtKB/Swiss-Prot
  Q96LH8 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-06-30 LSM14B  LSM family member 14B    LSM14B, SCD6 homolog B (S. cerevisiae)  Symbol and/or name change 5135510 APPROVED